1
|
Jayasinghe YP, Banco MT, Lindenberger JJ, Favrot L, Palčeková Z, Jackson M, Manabe S, Ronning DR. The Mycobacterium tuberculosis mycothiol S-transferase is divalent metal-dependent for mycothiol binding and transfer. RSC Med Chem 2023; 14:491-500. [PMID: 36970142 PMCID: PMC10034076 DOI: 10.1039/d2md00401a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Accepted: 01/21/2023] [Indexed: 01/27/2023] Open
Abstract
Mycothiol S-transferase (MST) (encoded by the rv0443 gene) was previously identified as the enzyme responsible for the transfer of Mycothiol (MSH) to xenobiotic acceptors in Mycobacterium tuberculosis (M.tb) during xenobiotic stress. To further characterize the functionality of MST in vitro and the possible roles in vivo, X-ray crystallographic, metal-dependent enzyme kinetics, thermal denaturation studies, and antibiotic MIC determination in rv0433 knockout strain were performed. The binding of MSH and Zn2+ increases the melting temperature by 12.9 °C as a consequence of the cooperative stabilization of MST by both MSH and metal. The co-crystal structure of MST in complex with MSH and Zn2+ to 1.45 Å resolution supports the specific utilization of MSH as a substrate as well as affording insights into the structural requirements of MSH binding and the metal-assisted catalytic mechanism of MST. Contrary to the well-defined role of MSH in mycobacterial xenobiotic responses and the ability of MST to bind MSH, cell-based studies with an M.tb rv0443 knockout strain failed to provide evidence for a role of MST in processing of rifampicin or isoniazid. These studies suggest the necessity of a new direction to identify acceptors of the enzyme and better define the biological role of MST in mycobacteria.
Collapse
Affiliation(s)
- Yahani P Jayasinghe
- Department of Pharmaceutical Sciences, College of Pharmacy, University of Nebraska Medical Center Omaha Nebraska USA
| | - Michael T Banco
- Department of Chemistry and Biochemistry, University of Toledo Toledo Ohio USA
| | | | - Lorenza Favrot
- Department of Chemistry and Biochemistry, University of Toledo Toledo Ohio USA
| | - Zuzana Palčeková
- Mycobacteria Research Laboratories, Department of Microbiology, Immunology and Pathology, Colorado State University Fort Collins Colorado USA
| | - Mary Jackson
- Mycobacteria Research Laboratories, Department of Microbiology, Immunology and Pathology, Colorado State University Fort Collins Colorado USA
| | - Shino Manabe
- Laboratory of Functional Molecule Chemistry, Pharmaceutical Department and Institute of Medicinal Chemistry, Hoshi University Tokyo Japan
- Research Center for Pharmaceutical Development, Graduate School of Pharmaceutical Sciences & Faculty of Pharmaceutical Sciences, Tohoku University Miyagi Japan
| | - Donald R Ronning
- Department of Pharmaceutical Sciences, College of Pharmacy, University of Nebraska Medical Center Omaha Nebraska USA
| |
Collapse
|
2
|
Endo H, Ochi M, Rahman MA, Hamada T, Kawano T, Nokami T. Synthesis of cyclic α-1,4-oligo- N-acetylglucosamine 'cyclokasaodorin' via a one-pot electrochemical polyglycosylation-isomerization-cyclization process. Chem Commun (Camb) 2022; 58:7948-7951. [PMID: 35748909 DOI: 10.1039/d2cc02287g] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Electrochemical synthesis of unnatural cyclic oligosaccharides composed of N-acetylglucosamine with α-1,4-glycosidic linkages has been accomplished. A thioglycoside monomer equipped with the 2,3-oxazolidinone protecting group was used to prepare linear oligosaccharides by electrochemical polyglycosylation. In the same pot, isomerization of the linear oligosaccharides and intramolecular electrochemical glycosylation for cyclization were also conducted sequentially to obtain the precursor of the cyclic α-1,4-oligo-N-acetylglucosamine 'cyclokasaodorin'.
Collapse
Affiliation(s)
- Hirofumi Endo
- Department of Chemistry and Biotechnology, Tottori University, 4-101 Koyamacho Minami, Tottori City, 680-8552 Tottori, Japan.
| | - Masaharu Ochi
- Department of Chemistry and Biotechnology, Tottori University, 4-101 Koyamacho Minami, Tottori City, 680-8552 Tottori, Japan.
| | - Md Azadur Rahman
- Department of Chemistry and Biotechnology, Tottori University, 4-101 Koyamacho Minami, Tottori City, 680-8552 Tottori, Japan.
| | - Tomoaki Hamada
- Koganei Corporation, 3-11-28 Midorimachi, Koganei City, 184-8533 Tokyo, Japan
| | - Takahiro Kawano
- Koganei Corporation, 3-11-28 Midorimachi, Koganei City, 184-8533 Tokyo, Japan
| | - Toshiki Nokami
- Department of Chemistry and Biotechnology, Tottori University, 4-101 Koyamacho Minami, Tottori City, 680-8552 Tottori, Japan. .,Centre for Research on Green Sustainable Chemistry, Faculty of Engineering, Tottori University, 4-101 Koyamacho Minami, Tottori City, 680-8552 Tottori, Japan
| |
Collapse
|
3
|
Zhong X, Zhao X, Ao J, Huang Y, Liu Y, Zhou S, Li B, Ishiwata A, Fang Q, Yang C, Cai H, Ding F. An experimental and theoretical study on stereocontrolled glycosylations by a “one-pot” procedure. Org Chem Front 2022. [DOI: 10.1039/d2qo00727d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein we describe a “one-pot” strategy to install the stereoselectivity of both α- and β-glycosides by changing reaction conditions.
Collapse
Affiliation(s)
- Xuemei Zhong
- School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Xiaoya Zhao
- School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Jiaming Ao
- School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Yan Huang
- School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Yuhua Liu
- School of Physics and Electronic Engineering, Guangzhou University, Guangzhou 510006, China
| | - Siai Zhou
- School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Bizhi Li
- School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | | | - Qianglin Fang
- School of Public Health (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Chongguang Yang
- School of Public Health (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Hui Cai
- School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Feiqing Ding
- School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| |
Collapse
|
4
|
El-Faham A, Albericio F, Manne SR, de la Torre BG. OxymaPure Coupling Reagents: Beyond Solid-Phase Peptide Synthesis. SYNTHESIS-STUTTGART 2020. [DOI: 10.1055/s-0040-1706296] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
AbstractOxymaPure [ethyl 2-cyano-2-(hydroxyimino)acetate] is an exceptional reagent with which to suppress racemization and enhance coupling efficiency during amide bond formation. The tremendous popularity of OxymaPure has led to the development of several Oxyma-based reagents. OxymaPure and its derived reagents are widely used in solid- and solution-phase peptide chemistry. This review summarizes the recent developments and applications of OxymaPure and Oxyma-based reagents in peptide chemistry, in particular in solution-phase chemistry. Moreover, the side reaction associated with OxymaPure is also discussed.1 Introduction2 Oxyma-Based Coupling Reagents2.1 Aminium/Uronium Salts of OxymaPure2.2 Phosphonium Salts of OxymaPure2.3 Oxyma-Based Phosphates2.4 Sulfonate Esters of OxymaPure2.5 Benzoate Esters of OxymaPure2.6 Carbonates of OxymaPure Derivatives3 OxymaPure Derivatives4 Other Oxime-Based Additives and Coupling Reagents5 Side Reactions Using OxymaPure Derivatives6 Conclusion7 List of Abbreviations
Collapse
Affiliation(s)
- Ayman El-Faham
- Department of Chemistry, College of Science, King Saud University
- Department of Chemistry, Faculty of Science, Alexandria University,
| | - Fernando Albericio
- Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal
- Department of Chemistry, College of Science, King Saud University
- Institute for Advanced Chemistry of Catalonia (IQAC-CSIC)
- CIBER-BBN, Networking Centre on Bioengineering, Biomaterials and Nanomedicine, and Department of Organic Chemistry, University of Barcelona
| | - Srinivasa Rao Manne
- Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal
| | - Beatriz G. de la Torre
- Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal
- KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal
| |
Collapse
|
5
|
Travis S, Shay MR, Manabe S, Gilbert NC, Frantom PA, Thompson MK. Characterization of the genomically encoded fosfomycin resistance enzyme from Mycobacterium abscessus. MEDCHEMCOMM 2019; 10:1948-1957. [PMID: 32952996 PMCID: PMC7478155 DOI: 10.1039/c9md00372j] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Accepted: 09/17/2019] [Indexed: 01/03/2023]
Abstract
Mycobacterium abscessus belongs to a group of rapidly growing mycobacteria (RGM) and accounts for approximately 65-80% of lung disease caused by RGM. It is highly pathogenic and is considered the prominent Mycobacterium involved in pulmonary infection in patients with cystic fibrosis and chronic pulmonary disease (CPD). FosM is a putative 134 amino acid fosfomycin resistance enzyme from M. abscessus subsp. bolletii that shares approximately 30-55% sequence identity with other vicinal oxygen chelate (VOC) fosfomycin resistance enzymes and represents the first of its type found in any Mycobacterium species. Genes encoding VOC fosfomycin resistance enzymes have been found in both Gram-positive and Gram-negative pathogens. Given that FosA enzymes from Gram-negative bacteria have evolved optimum activity towards glutathione (GSH) and FosB enzymes from Gram-positive bacteria have evolved optimum activity towards bacillithiol (BSH), it was originally suggested that FosM might represent a fourth class of enzyme that has evolved to utilize mycothiol (MSH). However, a sequence similarity network (SSN) analysis identifies FosM as a member of the FosX subfamily, indicating that it may utilize water as a substrate. Here we have synthesized MSH and characterized FosM with respect to divalent metal ion activation and nucleophile selectivity. Our results indicate that FosM is a Mn2+-dependent FosX-type hydrase with no selectivity toward MSH or other thiols as analyzed by NMR and mass spectroscopy.
Collapse
Affiliation(s)
- Skye Travis
- Department of Chemistry & Biochemistry , The University of Alabama , 250 Hackberry Lane , Box 870336 , Tuscaloosa , AL 35487 , USA . ; Tel: +(205) 348 7020
| | - Madeline R Shay
- Department of Chemistry & Biochemistry , The University of Alabama , 250 Hackberry Lane , Box 870336 , Tuscaloosa , AL 35487 , USA . ; Tel: +(205) 348 7020
| | - Shino Manabe
- Synthetic Cellular Chemistry Laboratory , RIKEN , Hirosawa , Wako , Saitama 351-0198 , Japan
| | - Nathaniel C Gilbert
- Center for Advanced Microstructures and Devices , Louisiana State University , 6980 Jefferson Highway , Baton Rouge , Louisiana 70806 , USA
| | - Patrick A Frantom
- Department of Chemistry & Biochemistry , The University of Alabama , 250 Hackberry Lane , Box 870336 , Tuscaloosa , AL 35487 , USA . ; Tel: +(205) 348 7020
| | - Matthew K Thompson
- Department of Chemistry & Biochemistry , The University of Alabama , 250 Hackberry Lane , Box 870336 , Tuscaloosa , AL 35487 , USA . ; Tel: +(205) 348 7020
| |
Collapse
|
6
|
Abstract
AbstractExistence of endocyclic cleavage reaction is now clearly shown from experimental evidence of endocyclic cleavage reaction as well as computational chemistry. Not only stereoelectronic factor, several factors could be main factors for endocyclic cleavage reaction. Endocyclic cleavage reaction is useful for 1,2-cis aminoglycoside formation, which is difficult by conventional glycosylation. By using endocyclic cleavage reaction, several glycosides with 1,2-cis aminoglycoside were prepared.
Collapse
Affiliation(s)
- Shino Manabe
- RIKEN, Synthetic Cellular Chemistry Laboratory, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Yukishige Ito
- RIKEN, Synthetic Cellular Chemistry Laboratory, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| |
Collapse
|