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Anggara K, Sršan L, Jaroentomeechai T, Wu X, Rauschenbach S, Narimatsu Y, Clausen H, Ziegler T, Miller RL, Kern K. Direct observation of glycans bonded to proteins and lipids at the single-molecule level. Science 2023; 382:219-223. [PMID: 37824645 PMCID: PMC7615228 DOI: 10.1126/science.adh3856] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 08/31/2023] [Indexed: 10/14/2023]
Abstract
Proteins and lipids decorated with glycans are found throughout biological entities, playing roles in biological functions and dysfunctions. Current analytical strategies for these glycan-decorated biomolecules, termed glycoconjugates, rely on ensemble-averaged methods that do not provide a full view of positions and structures of glycans attached at individual sites in a given molecule, especially for glycoproteins. We show single-molecule analysis of glycoconjugates by direct imaging of individual glycoconjugate molecules using low-temperature scanning tunneling microscopy. Intact glycoconjugate ions from electrospray are soft-landed on a surface for their direct single-molecule imaging. The submolecular imaging resolution corroborated by quantum mechanical modeling unveils whole structures and attachment sites of glycans in glycopeptides, glycolipids, N-glycoproteins, and O-glycoproteins densely decorated with glycans.
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Affiliation(s)
- Kelvin Anggara
- Max-Planck Institute for Solid-State Research; Stuttgart, DE-70569, Germany
| | - Laura Sršan
- Institute of Organic Chemistry, University of Tübingen; Tübingen, DE-72076, Germany
| | - Thapakorn Jaroentomeechai
- Copenhagen Center for Glycomics, Department of Cellular & Molecular Medicine, University of Copenhagen; Copenhagen, DK-2200, Denmark
| | - Xu Wu
- Max-Planck Institute for Solid-State Research; Stuttgart, DE-70569, Germany
| | - Stephan Rauschenbach
- Max-Planck Institute for Solid-State Research; Stuttgart, DE-70569, Germany
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford; Oxford, OX1 3TA, United Kingdom
| | - Yoshiki Narimatsu
- Copenhagen Center for Glycomics, Department of Cellular & Molecular Medicine, University of Copenhagen; Copenhagen, DK-2200, Denmark
- GlycoDisplay ApS, Copenhagen, DK-2200, Denmark
| | - Henrik Clausen
- Copenhagen Center for Glycomics, Department of Cellular & Molecular Medicine, University of Copenhagen; Copenhagen, DK-2200, Denmark
| | - Thomas Ziegler
- Institute of Organic Chemistry, University of Tübingen; Tübingen, DE-72076, Germany
| | - Rebecca L. Miller
- Copenhagen Center for Glycomics, Department of Cellular & Molecular Medicine, University of Copenhagen; Copenhagen, DK-2200, Denmark
| | - Klaus Kern
- Max-Planck Institute for Solid-State Research; Stuttgart, DE-70569, Germany
- Institut de Physique, École Polytechnique Fédérale de Lausanne; Lausanne, CH-1015, Switzerland
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Sršan L, Ziegler T. Nonconsensus motif directed chemical synthesis of glutamine-based glycopeptides. J Pept Sci 2020; 26:e3285. [PMID: 32902095 DOI: 10.1002/psc.3285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 08/24/2020] [Accepted: 08/24/2020] [Indexed: 11/12/2022]
Abstract
Besides the most common sequon of amino acids found in glycopeptides, namely, N-X-S/T, where X can be any amino acid except proline, a small number of nonconsensus motifs have been found in both eukaryotic and prokaryotic organisms, for example, Q-G-T. Because of the importance of glycopeptides in biotechnology and pharmacy, an adequate synthetic approach to these structures is highly important. In this manuscript, we report the efficient chemical batch synthesis of new glutamine-based glycopeptide structures, which can be used to represent cell surface elements in further biological investigations.
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Affiliation(s)
- Laura Sršan
- University of Tübingen, Institute of Organic Chemistry, Tübingen, 72076, Germany
| | - Thomas Ziegler
- University of Tübingen, Institute of Organic Chemistry, Tübingen, 72076, Germany
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