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Janicka M, Sztanke M, Sztanke K. Modeling the Blood-Brain Barrier Permeability of Potential Heterocyclic Drugs via Biomimetic IAM Chromatography Technique Combined with QSAR Methodology. Molecules 2024; 29:287. [PMID: 38257200 PMCID: PMC11154582 DOI: 10.3390/molecules29020287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 12/21/2023] [Accepted: 12/27/2023] [Indexed: 01/24/2024] Open
Abstract
Penetration through the blood-brain barrier (BBB) is desirable in the case of potential pharmaceuticals acting on the central nervous system (CNS), but is undesirable in the case of drug candidates acting on the peripheral nervous system because it may cause CNS side effects. Therefore, modeling of the permeability across the blood-brain barrier (i.e., the logarithm of the brain to blood concentration ratio, log BB) of potential pharmaceuticals should be performed as early as possible in the preclinical phase of drug development. Biomimetic chromatography with immobilized artificial membrane (IAM) and the quantitative structure-activity relationship (QSAR) methodology were successful in modeling the blood-brain barrier permeability of 126 drug candidates, whose experimentally-derived lipophilicity indices and computationally-derived molecular descriptors (such as molecular weight (MW), number of rotatable bonds (NRB), number of hydrogen bond donors (HBD), number of hydrogen bond acceptors (HBA), topological polar surface area (TPSA), and polarizability (α)) varied by class. The QSARs model established by multiple linear regression showed a positive effect of the lipophilicity (log kw, IAM) and molecular weight of the compound, and a negative effect of the number of hydrogen bond donors and acceptors, on the log BB values. The model has been cross-validated, and all statistics indicate that it is very good and has high predictive ability. The simplicity of the developed model, and its usefulness in screening studies of novel drug candidates that are able to cross the BBB by passive diffusion, are emphasized.
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Affiliation(s)
- Małgorzata Janicka
- Department of Physical Chemistry, Faculty of Chemistry, Institute of Chemical Science, Maria Curie-Skłodowska University, 20-031 Lublin, Poland;
| | - Małgorzata Sztanke
- Department of Medical Chemistry, Medical University of Lublin, 4A Chodźki Street, 20-093 Lublin, Poland;
| | - Krzysztof Sztanke
- Laboratory of Bioorganic Compounds Synthesis and Analysis, Medical University of Lublin, 4A Chodźki Street, 20-093 Lublin, Poland
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2
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Tshiluka NR, Bvumbi MV, Tshishonga U, Mnyakeni-Moleele SS. Synthesis of new 5-benzylidene-hydantoin esters. JOURNAL OF CHEMICAL RESEARCH 2022. [DOI: 10.1177/17475198221104183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Compounds containing a hydantoin moiety are found in several medicines in clinical use. In this research, ethyl- and methyl-[2-(5-benzylidene)-2,4-dioxoimidazolidin-3-yl]acetyl esters are successfully synthesized over four reaction steps using conventional methods. The synthesis begins by subjecting hydantoin to a Knoevenagel condensation reaction with three different benzaldehydes to afford the penultimate products, which are further reacted with ethyl or methyl (bromoacetyl)alaninates, butanoates, valinates, and norvalinates to give the desired products as esters in low to moderate yields.
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3
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Tzvetkov NT, Peeva MI, Tsakovska I, Milella L, Pajeva I, Stammler HG. The crystal structure of (4SR)-7-(3,4-dichlorobenzyl)-4,8,8-trimethyl-7,8-dihydroimidazo[5,1c][1,2,4]triazine-3,6(2H,4H)-dione, C15H16Cl2N4O2. Z KRIST-NEW CRYST ST 2022. [DOI: 10.1515/ncrs-2022-0016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C15H16Cl2N4O2, monoclinic, P21/c (no. 14), a = 26.2014(7) Å, b = 7.59320(10) Å, c = 17.9766(4) Å, β = 109.217(3)°, V = 3377.20(14) Å3, Z = 8, R
gt
(F) = 0.0503, wR
ref
(F
2) = 0.1411, T = 100.0(1) K.
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Affiliation(s)
- Nikolay T. Tzvetkov
- Institute of Molecular Biology “Roumen Tsanev”, Bulgarian Academy of Sciences , Acad. G. Bonchev Str., Bl. 21 , Sofia 1113 , Bulgaria
| | - Martina I. Peeva
- Institute of Molecular Biology “Roumen Tsanev”, Bulgarian Academy of Sciences , Acad. G. Bonchev Str., Bl. 21 , Sofia 1113 , Bulgaria
| | - Ivanka Tsakovska
- Department of QSAR and Molecular Modelling , Institute of Biophysics and Biomedical Engineering, Bulgarian Academy of Sciences , Acad. G. Bonchev Str., Bl. 105 , Sofia 1113 , Bulgaria
| | - Luigi Milella
- Department of Science , University of Basilicata , via dell’Ateneo Lucano 10, 85100 Potenza , Italy
- Spinoff Bioactiplant , University of Basilicata , via dell’Ateneo Lucano 10, 85100 Potenza , Italy
| | - Ilza Pajeva
- Department of QSAR and Molecular Modelling , Institute of Biophysics and Biomedical Engineering, Bulgarian Academy of Sciences , Acad. G. Bonchev Str., Bl. 105 , Sofia 1113 , Bulgaria
| | - Hans-Georg Stammler
- Department of Chemistry , University of Bielefeld , Universitätsstrasse 25, D-33615 Bielefeld , Germany
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Giannakopoulou E, Pardali V, Skrettas I, Zoidis G. Transesterification instead of N‐Alkylation: An Intriguing Reaction. ChemistrySelect 2019. [DOI: 10.1002/slct.201900263] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Erofili Giannakopoulou
- School of Health Sciences, Faculty of PharmacyDepartment of Pharmaceutical ChemistryNational and Kapodistrian University of Athens Panepistimiopolis-Zografou GR-15771, A thens Greece
| | - Vasiliki Pardali
- School of Health Sciences, Faculty of PharmacyDepartment of Pharmaceutical ChemistryNational and Kapodistrian University of Athens Panepistimiopolis-Zografou GR-15771, A thens Greece
| | - Ioannis Skrettas
- School of Health Sciences, Faculty of PharmacyDepartment of Pharmaceutical ChemistryNational and Kapodistrian University of Athens Panepistimiopolis-Zografou GR-15771, A thens Greece
| | - Grigoris Zoidis
- School of Health Sciences, Faculty of PharmacyDepartment of Pharmaceutical ChemistryNational and Kapodistrian University of Athens Panepistimiopolis-Zografou GR-15771, A thens Greece
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Fetzer C, Korotkov VS, Sieber SA. Hydantoin analogs inhibit the fully assembled ClpXP protease without affecting the individual peptidase and chaperone domains. Org Biomol Chem 2019; 17:7124-7127. [DOI: 10.1039/c9ob01339c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new class of non-covalent inhibitors attenuates ClpXP turnover, neither impairing chaperone nor peptidase activity.
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Affiliation(s)
- Christian Fetzer
- Technische Universität München
- Center for Integrated Protein Science Munich (CIPSM)
- 85748 Garching
- Germany
| | - Vadim S. Korotkov
- Technische Universität München
- Center for Integrated Protein Science Munich (CIPSM)
- 85748 Garching
- Germany
| | - Stephan A. Sieber
- Technische Universität München
- Center for Integrated Protein Science Munich (CIPSM)
- 85748 Garching
- Germany
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6
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Konnert L, Lamaty F, Martinez J, Colacino E. Recent Advances in the Synthesis of Hydantoins: The State of the Art of a Valuable Scaffold. Chem Rev 2017. [PMID: 28644621 DOI: 10.1021/acs.chemrev.7b00067] [Citation(s) in RCA: 117] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The review highlights the hydantoin syntheses presented from the point of view of the preparation methods. Novel synthetic routes to various hydantoin structures, the advances brought to the classical methods in the aim of producing more sustainable and environmentally friendly procedures for the preparation of these biomolecules, and a critical comparison of the different synthetic approaches developed in the last twelve years are also described. The review is composed of 95 schemes, 8 figures and 528 references for the last 12 years and includes the description of the hydantoin-based marketed drugs and clinical candidates.
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Affiliation(s)
- Laure Konnert
- Université de Montpellier, Institut des Biomolécules Max Mousseron UMR 5247 CNRS - Universités Montpellier - ENSCM , Place E. Bataillon, Campus Triolet, cc 1703, 34095 Montpellier, France
| | - Frédéric Lamaty
- Université de Montpellier, Institut des Biomolécules Max Mousseron UMR 5247 CNRS - Universités Montpellier - ENSCM , Place E. Bataillon, Campus Triolet, cc 1703, 34095 Montpellier, France
| | - Jean Martinez
- Université de Montpellier, Institut des Biomolécules Max Mousseron UMR 5247 CNRS - Universités Montpellier - ENSCM , Place E. Bataillon, Campus Triolet, cc 1703, 34095 Montpellier, France
| | - Evelina Colacino
- Université de Montpellier, Institut des Biomolécules Max Mousseron UMR 5247 CNRS - Universités Montpellier - ENSCM , Place E. Bataillon, Campus Triolet, cc 1703, 34095 Montpellier, France
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7
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Tzvetkov NT, Neumann B, Stammler HG. The twinned crystal structure of (4SR)-7-benzyl-2,4,8,8-tetramethyl-7,8-dihydroimidazo[5,1-c][1,2,4]triazine-3,6(2H,4H)-dione, C16H20N4O2. Z KRIST-NEW CRYST ST 2017. [DOI: 10.1515/ncrs-2016-0218] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractC16H20N4O2, triclinic, P1̅ (no. 2), a = 9.0959(5) Å, b = 9.1993(5) Å, c = 18.5825(9) Å, α = 100.534(4)°, β = 94.120(4)°, γ = 94.752(4)°, V = 1517.44(13) Å3, Z = 4, Rgt(F) = 0.0801, wRref(F2) = 0.2371, T = 100(1) K.
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Affiliation(s)
- Nikolay T. Tzvetkov
- 1Pharmaceutical Institute, University of Bonn, An der Immenburg 4, D-53121 Bonn, Germany
| | - Beate Neumann
- 2Department of Chemistry, University of Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Hans-Georg Stammler
- 2Department of Chemistry, University of Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
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8
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Konnert L, Gonnet L, Halasz I, Suppo JS, de Figueiredo RM, Campagne JM, Lamaty F, Martinez J, Colacino E. Mechanochemical Preparation of 3,5-Disubstituted Hydantoins from Dipeptides and Unsymmetrical Ureas of Amino Acid Derivatives. J Org Chem 2016; 81:9802-9809. [DOI: 10.1021/acs.joc.6b01832] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Laure Konnert
- Université de Montpellier, Institut des Biomolécules Max Mousseron UMR 5247 CNRS, ENSCM, Place
E. Bataillon, Campus Triolet, cc 1703, 34095 Montpellier, France
| | - Lori Gonnet
- Université de Montpellier, Institut des Biomolécules Max Mousseron UMR 5247 CNRS, ENSCM, Place
E. Bataillon, Campus Triolet, cc 1703, 34095 Montpellier, France
| | - Ivan Halasz
- Ruđer Bošković Institute, Bijenička cesta 54, Zagreb, Croatia
| | - Jean-Simon Suppo
- Institut Charles Gerhardt Montpellier (ICGM), UMR 5253 CNRS-UM-ENSCM, Ecole Nationale Supérieure de Chimie, 8 Rue de l’Ecole Normale, 34296 Montpellier Cedex 5, France
| | - Renata Marcia de Figueiredo
- Institut Charles Gerhardt Montpellier (ICGM), UMR 5253 CNRS-UM-ENSCM, Ecole Nationale Supérieure de Chimie, 8 Rue de l’Ecole Normale, 34296 Montpellier Cedex 5, France
| | - Jean-Marc Campagne
- Institut Charles Gerhardt Montpellier (ICGM), UMR 5253 CNRS-UM-ENSCM, Ecole Nationale Supérieure de Chimie, 8 Rue de l’Ecole Normale, 34296 Montpellier Cedex 5, France
| | - Fredéric Lamaty
- Université de Montpellier, Institut des Biomolécules Max Mousseron UMR 5247 CNRS, ENSCM, Place
E. Bataillon, Campus Triolet, cc 1703, 34095 Montpellier, France
| | - Jean Martinez
- Université de Montpellier, Institut des Biomolécules Max Mousseron UMR 5247 CNRS, ENSCM, Place
E. Bataillon, Campus Triolet, cc 1703, 34095 Montpellier, France
| | - Evelina Colacino
- Université de Montpellier, Institut des Biomolécules Max Mousseron UMR 5247 CNRS, ENSCM, Place
E. Bataillon, Campus Triolet, cc 1703, 34095 Montpellier, France
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9
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Tzvetkov NT, Neumann B, Stammler HG, Antonov L. A simple approach to multifunctionalized N1-alkylated 7-amino-6-azaoxindole derivatives using their in situ stabilized tautomer form. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.08.055] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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10
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Ghorbani-Vaghei R, Shahriari A, Salimi Z, Hajinazari S. Solvent-free synthesis of triazines using N-halosulfonamides. RSC Adv 2015. [DOI: 10.1039/c4ra10892b] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
We have developed an efficient procedure for the synthesis of 1,2,4-triazine derivatives using [TBBDA] and [PBBS] as new catalysts.
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Affiliation(s)
- Ramin Ghorbani-Vaghei
- Department of Organic Chemistry
- Faculty of Chemistry
- Bu-Ali Sina University
- Hamedan
- Iran
| | - Azadeh Shahriari
- Department of Organic Chemistry
- Faculty of Chemistry
- Bu-Ali Sina University
- Hamedan
- Iran
| | - Zahra Salimi
- Department of Organic Chemistry
- Faculty of Chemistry
- Bu-Ali Sina University
- Hamedan
- Iran
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11
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Tzvetkov NT, Hinz S, Küppers P, Gastreich M, Müller CE. Indazole- and Indole-5-carboxamides: Selective and Reversible Monoamine Oxidase B Inhibitors with Subnanomolar Potency. J Med Chem 2014; 57:6679-703. [DOI: 10.1021/jm500729a] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Nikolay T. Tzvetkov
- Pharmaceutical Institute, Pharmaceutical
Chemistry I, PharmaCenter Bonn, University of Bonn, An der Immenburg
4, D-53121 Bonn, Germany
| | - Sonja Hinz
- Pharmaceutical Institute, Pharmaceutical
Chemistry I, PharmaCenter Bonn, University of Bonn, An der Immenburg
4, D-53121 Bonn, Germany
| | - Petra Küppers
- Pharmaceutical Institute, Pharmaceutical
Chemistry I, PharmaCenter Bonn, University of Bonn, An der Immenburg
4, D-53121 Bonn, Germany
| | - Marcus Gastreich
- BioSolveIT GmbH, An der Ziegelei 79, 53757 St. Augustin, Germany
| | - Christa E. Müller
- Pharmaceutical Institute, Pharmaceutical
Chemistry I, PharmaCenter Bonn, University of Bonn, An der Immenburg
4, D-53121 Bonn, Germany
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