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Albertini S, Gruber E, Zappa F, Krasnokutski S, Laimer F, Scheier P. Chemistry and physics of dopants embedded in helium droplets. MASS SPECTROMETRY REVIEWS 2022; 41:529-567. [PMID: 33993543 DOI: 10.1002/mas.21699] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 04/20/2021] [Accepted: 04/20/2021] [Indexed: 05/18/2023]
Abstract
Helium droplets represent a cold inert matrix, free of walls with outstanding properties to grow complexes and clusters at conditions that are perfect to simulate cold and dense regions of the interstellar medium. At sub-Kelvin temperatures, barrierless reactions triggered by radicals or ions have been observed and studied by optical spectroscopy and mass spectrometry. The present review summarizes developments of experimental techniques and methods and recent results they enabled.
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Affiliation(s)
- Simon Albertini
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Innsbruck, Austria
| | - Elisabeth Gruber
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Innsbruck, Austria
| | - Fabio Zappa
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Innsbruck, Austria
| | - Serge Krasnokutski
- Laboratory Astrophysics Group of the MPI for Astronomy, University of Jena, Jena, Germany
| | - Felix Laimer
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Innsbruck, Austria
| | - Paul Scheier
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Innsbruck, Austria
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Tracing the Primordial Chemical Life of Glycine: A Review from Quantum Chemical Simulations. Int J Mol Sci 2022; 23:ijms23084252. [PMID: 35457069 PMCID: PMC9030215 DOI: 10.3390/ijms23084252] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 04/08/2022] [Accepted: 04/09/2022] [Indexed: 12/28/2022] Open
Abstract
Glycine (Gly), NH2CH2COOH, is the simplest amino acid. Although it has not been directly detected in the interstellar gas-phase medium, it has been identified in comets and meteorites, and its synthesis in these environments has been simulated in terrestrial laboratory experiments. Likewise, condensation of Gly to form peptides in scenarios resembling those present in a primordial Earth has been demonstrated experimentally. Thus, Gly is a paradigmatic system for biomolecular building blocks to investigate how they can be synthesized in astrophysical environments, transported and delivered by fragments of asteroids (meteorites, once they land on Earth) and comets (interplanetary dust particles that land on Earth) to the primitive Earth, and there react to form biopolymers as a step towards the emergence of life. Quantum chemical investigations addressing these Gly-related events have been performed, providing fundamental atomic-scale information and quantitative energetic data. However, they are spread in the literature and difficult to harmonize in a consistent way due to different computational chemistry methodologies and model systems. This review aims to collect the work done so far to characterize, at a quantum mechanical level, the chemical life of Gly, i.e., from its synthesis in the interstellar medium up to its polymerization on Earth.
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Qasim D, Witlox MJA, Fedoseev G, Chuang KJ, Banu T, Krasnokutski SA, Ioppolo S, Kästner J, van Dishoeck EF, Linnartz H. A cryogenic ice setup to simulate carbon atom reactions in interstellar ices. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2020; 91:054501. [PMID: 32486761 DOI: 10.1063/5.0003692] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 04/14/2020] [Indexed: 06/11/2023]
Abstract
The design, implementation, and performance of a customized carbon atom beam source for the purpose of investigating solid-state reaction routes in interstellar ices in molecular clouds are discussed. The source is integrated into an existing ultrahigh vacuum setup, SURFace REaction SImulation DEvice (SURFRESIDE2), which extends this double atom (H/D, O, and N) beamline apparatus with a third atom (C) beamline to a unique system that is fully suited to explore complex organic molecule solid-state formation under representative interstellar cloud conditions. The parameter space for this system is discussed, which includes the flux of the carbon atoms hitting the ice sample, their temperature, and the potential impact of temperature on ice reactions. Much effort has been put into constraining the beam size to within the limits of the sample size with the aim of reducing carbon pollution inside the setup. How the C-atom beam performs is quantitatively studied through the example experiment, C + 18O2, and supported by computationally derived activation barriers. The potential for this source to study the solid-state formation of interstellar complex organic molecules through C-atom reactions is discussed.
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Affiliation(s)
- D Qasim
- Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands
| | - M J A Witlox
- Fine Mechanical Department, Leiden Institute for Physics Research (LION), Niels Bohrweg 2, NL-2333 CA Leiden, The Netherlands
| | - G Fedoseev
- Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands
| | - K-J Chuang
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, D-07743 Jena, Germany
| | - T Banu
- Institute for Theoretical Chemistry, University of Stuttgart, D-70569 Stuttgart, Germany
| | - S A Krasnokutski
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Institute of Solid State Physics, Helmholtzweg 3, D-07743 Jena, Germany
| | - S Ioppolo
- School of Electronic Engineering and Computer Science, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom
| | - J Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, D-70569 Stuttgart, Germany
| | - E F van Dishoeck
- Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands
| | - H Linnartz
- Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands
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Blancafort-Jorquera M, Vilà A, González M. Quantum-classical approach to the reaction dynamics in a superfluid helium nanodroplet. The Ne 2 dimer and Ne-Ne adduct formation reaction Ne + Ne-doped nanodroplet. Phys Chem Chem Phys 2019; 21:24218-24231. [PMID: 31661098 DOI: 10.1039/c9cp04561a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The dynamics of the Ne2 dimer and Ne-Ne adduct formation in a superfluid helium nanodroplet [(4He)N; T = 0.37 K], Ne + Ne@(4He)N→ Ne2@(4He)N'/Ne-Ne@(4He)N' + (N-N')4He with N = 500, has been investigated using a hybrid approach (quantum and classical mechanics (QM-CM) descriptions for helium and the Ne atoms, respectively) and taking into account the angular momentum of the attacking Ne atom, Ne(1). Comparison with zero angular momentum QM results of our own shows that the present results are similar to the quantum ones for the initial Ne(1) velocities (v0) of 500 and 800 m s-1 (the former one being the most probable velocity of Ne at 300 K), in all cases leading to the Ne2 dimer (re = 3.09 Å). However, significant differences appear below v0 = 500 m s-1, because in the QM-CM dynamics, instead of the dimer, a Ne-Ne adduct is formed (r0 = 5.45 Å). The formation of this adduct will probably dominate as the contribution to reactivity of angular momenta larger than zero is the leading one and angular momentum strongly acts against the Ne2 production. Angular momentum adds further difficulties in producing the dimer, since it makes it more difficult to remove the helium density between both Ne atoms to lead, subsequently, to the Ne2 molecule. Hence, the formation of the neon-neon adduct, Ne-Ne@(4He)N', clearly dominates the reactivity of the system, which results in the formation of a "quantum gel"/"quantum foam", because the two Ne atoms essentially maintain their identity inside the nanodroplet. Large enough Ne(1) initial angular momentum values can induce the formation of vortex lines by the collapse of superficial excitations (ripplons), but they occur with greater difficulty than in the case of the capture of the Ne atom by a non doped helium nanodroplet, due to the wave interferences induced by the Ne induced by the solvation layers of the Ne atom originally placed inside the nanodroplet. We hope that this work will encourage other researchers to investigate the reaction dynamics in helium nanodroplets, an interesting topic on which there are few studies available.
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Affiliation(s)
- Miquel Blancafort-Jorquera
- Departament de Ciència de Materials i Química Física and IQTC, Universitat de Barcelona, Martí i Franquès, 1-11, 08028 Barcelona, Spain.
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