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Rowley AM, Yao G, Andrews L, Bedermann A, Biddulph R, Bingham R, Brady JJ, Buxton R, Cecconie T, Cooper R, Csakai A, Gao EN, Grenier-Davies MC, Lawler M, Lian Y, Macina J, Macphee C, Marcaurelle L, Martin J, McCormick P, Pindoria R, Rauch M, Rocque W, Shen Y, Shewchuk LM, Squire M, Stebbeds W, Tear W, Wang X, Ward P, Xiao S. Discovery and SAR Study of Boronic Acid-Based Selective PDE3B Inhibitors from a Novel DNA-Encoded Library. J Med Chem 2024; 67:2049-2065. [PMID: 38284310 DOI: 10.1021/acs.jmedchem.3c01562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2024]
Abstract
Human genetic evidence shows that PDE3B is associated with metabolic and dyslipidemia phenotypes. A number of PDE3 family selective inhibitors have been approved by the FDA for various indications; however, given the undesirable proarrhythmic effects in the heart, selectivity for PDE3B inhibition over closely related family members (such as PDE3A; 48% identity) is a critical consideration for development of PDE3B therapeutics. Selectivity for PDE3B over PDE3A may be achieved in a variety of ways, including properties intrinsic to the compound or tissue-selective targeting. The high (>95%) active site homology between PDE3A and B represents a massive obstacle for obtaining selectivity at the active site; however, utilization of libraries with high molecular diversity in high throughput screens may uncover selective chemical matter. Herein, we employed a DNA-encoded library screen to identify PDE3B-selective inhibitors and identified potent and selective boronic acid compounds bound at the active site.
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Affiliation(s)
- Ann M Rowley
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Gang Yao
- GSK, Encoded Library Technologies, NCE Molecular Discovery, 200 Cambridge Park Drive, Cambridge, Massachusetts 02140, United States
| | - Logan Andrews
- 23andMe Inc, Therapeutics, 349 Oyster Point Boulevard, South San Francisco, California 94080, United States
| | - Aaron Bedermann
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Ross Biddulph
- GSK Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, Hertfordshire, U.K
| | - Ryan Bingham
- GSK Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, Hertfordshire, U.K
| | - Jennifer J Brady
- 23andMe Inc, Therapeutics, 349 Oyster Point Boulevard, South San Francisco, California 94080, United States
| | - Rachel Buxton
- GSK Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, Hertfordshire, U.K
| | - Ted Cecconie
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Rona Cooper
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Adam Csakai
- GSK, Encoded Library Technologies, NCE Molecular Discovery, 200 Cambridge Park Drive, Cambridge, Massachusetts 02140, United States
| | - Enoch N Gao
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Melissa C Grenier-Davies
- GSK, Encoded Library Technologies, NCE Molecular Discovery, 200 Cambridge Park Drive, Cambridge, Massachusetts 02140, United States
| | - Meghan Lawler
- GSK, Encoded Library Technologies, NCE Molecular Discovery, 200 Cambridge Park Drive, Cambridge, Massachusetts 02140, United States
| | - Yiqian Lian
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Justyna Macina
- GSK Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, Hertfordshire, U.K
| | - Colin Macphee
- GSK Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, Hertfordshire, U.K
| | - Lisa Marcaurelle
- GSK, Encoded Library Technologies, NCE Molecular Discovery, 200 Cambridge Park Drive, Cambridge, Massachusetts 02140, United States
| | - John Martin
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Patricia McCormick
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Rekha Pindoria
- GSK Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, Hertfordshire, U.K
| | - Martin Rauch
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Warren Rocque
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Yingnian Shen
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Lisa M Shewchuk
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Michael Squire
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Will Stebbeds
- GSK Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, Hertfordshire, U.K
| | - Westley Tear
- GSK, Encoded Library Technologies, NCE Molecular Discovery, 200 Cambridge Park Drive, Cambridge, Massachusetts 02140, United States
| | - Xin Wang
- 23andMe Inc, Therapeutics, 349 Oyster Point Boulevard, South San Francisco, California 94080, United States
| | - Paris Ward
- GSK, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Shouhua Xiao
- 23andMe Inc, Therapeutics, 349 Oyster Point Boulevard, South San Francisco, California 94080, United States
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