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Soares LB, Paim FG, Ramos LP, Foresti F, Oliveira C. Molecular cytogenetic analysis and the establishment of a cell culture in the fish species Hollandichthys multifasciatus (Eigenmann & Norris, 1900) (Characiformes, Characidae). Genet Mol Biol 2021; 44:e20200260. [PMID: 33877256 PMCID: PMC8056886 DOI: 10.1590/1678-4685-gmb-2020-0260] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Accepted: 02/07/2021] [Indexed: 11/22/2022] Open
Abstract
Hollandichthys is a fish genus of the family Characidae that
was until recently considered to be monotypic, with cytogenetic, morphological,
and molecular data being restricted to a few local populations. In the present
study, the karyotype of a population of Hollandichthys
multifasciatus was analyzed using classical and molecular
cytogenetic approaches for the investigation of potential markers that could
provide new perspectives on the cytotaxonomy. H. multifasciatus
presented a diploid number of 2n=50 chromosomes and a karyotype formula of
8m+10sm+32st. A single pair of chromosomes presented Ag-NORs signals, which
coincided with the 18S rDNA sites visualized by FISH, whilst the 5S rDNA
sequences were mapped in two chromosome pairs. The distribution of the U snRNA
genes was mapped on the Hollandichthys chromosomes for the
first time, with the probes revealing the presence of the U1 snDNA on the
chromosomes of pair 20, U2 on pairs 6 and 19, U4 on pair 16, and U6 on the
chromosomes of pair 11. The results of the present study indicated karyotypic
differences in comparison with the other populations of H.
multifasciatus studied previously, reinforcing the need for further
research to identify isolated populations or the potential existence of cryptic
Hollandichthys species.
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Affiliation(s)
- Letícia Batista Soares
- Universidade Estadual Paulista "Júlio de Mesquita Filho", Instituto de Biociências, Laboratório de Biologia e Genética de Peixes, Botucatu, SP, Brazil
| | - Fabilene Gomes Paim
- Universidade Estadual Paulista "Júlio de Mesquita Filho", Instituto de Biociências, Laboratório de Biologia e Genética de Peixes, Botucatu, SP, Brazil
| | - Lucas Peres Ramos
- Universidade Estadual Paulista "Júlio de Mesquita Filho", Instituto de Biociências, Laboratório de Biologia e Genética de Peixes, Botucatu, SP, Brazil
| | - Fausto Foresti
- Universidade Estadual Paulista "Júlio de Mesquita Filho", Instituto de Biociências, Laboratório de Biologia e Genética de Peixes, Botucatu, SP, Brazil
| | - Claudio Oliveira
- Universidade Estadual Paulista "Júlio de Mesquita Filho", Instituto de Biociências, Laboratório de Biologia e Genética de Peixes, Botucatu, SP, Brazil
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Dutra RT, Bitencourt JDA, Barreto Netto MRDC, Paim FG, Sarmento-Soares LM, Affonso PRADM. Chromosomal Markers Are Useful to Species Identification in Rivulidae (Cyprinodontiformes, Aplocheiloidei), Including the Resolution of Taxonomic Uncertainties in a Vulnerable Species Complex. Zebrafish 2020; 17:48-55. [DOI: 10.1089/zeb.2019.1822] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Rayana Tiago Dutra
- Department of Biological Sciences, Universidade Estadual do Sudoeste da Bahia, Bahia, Brazil
| | | | | | - Fabilene Gomes Paim
- Instituto de Biociências, Universidade Estadual Paulista, Botucatu, São Paulo, Brazil
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Aguirre WE, Young A, Navarrete-Amaya R, Valdiviezo-Rivera J, Jiménez-Prado P, Cucalón RV, Nugra-Salazar F, Calle-Delgado P, Borders T, Shervette VR. Vertebral number covaries with body form and elevation along the western slopes of the Ecuadorian Andes in the Neotropical fish genusRhoadsia(Teleostei: Characidae). Biol J Linn Soc Lond 2019. [DOI: 10.1093/biolinnean/blz002] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Windsor E Aguirre
- Department of Biological Sciences, DePaul University, Chicago, IL, USA
| | - Ashley Young
- Department of Biological Sciences, DePaul University, Chicago, IL, USA
| | | | | | - Pedro Jiménez-Prado
- Escuela de Gestión Ambiental, Pontificia Universidad Católica del Ecuador Sede Esmeraldas, Esmeraldas, Ecuador
| | - Roberto V Cucalón
- Department of Biological Sciences, DePaul University, Chicago, IL, USA
| | - Fredy Nugra-Salazar
- Laboratorio de Zoología de Vertebrados de la Universidad del Azuay, Cuenca, Ecuador
| | - Paola Calle-Delgado
- Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, Casilla, Guayaquil, Ecuador
| | - Thomas Borders
- Department of Biological Sciences, DePaul University, Chicago, IL, USA
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Araya-Jaime C, Lam N, Pinto IV, Méndez MA, Iturra P. Chromosomal organization of four classes of repetitive DNA sequences in killifish Orestias ascotanensis Parenti, 1984 (Cyprinodontiformes, Cyprinodontidae). COMPARATIVE CYTOGENETICS 2017; 11:463-475. [PMID: 29093798 PMCID: PMC5646654 DOI: 10.3897/compcytogen.v11i3.11729] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 06/14/2017] [Indexed: 06/01/2023]
Abstract
Orestias Valenciennes, 1839 is a genus of freshwater fish endemic to the South American Altiplano. Cytogenetic studies of these species have focused on conventional karyotyping. The aim of this study was to use classical and molecular cytogenetic methods to identify the constitutive heterochromatin distribution and chromosome organization of four classes of repetitive DNA sequences (histone H3 DNA, U2 snRNA, 18S rDNA and 5S rDNA) in the chromosomes of O. ascotanensis Parenti, 1984, an endemic species restricted to the Salar de Ascotán in the Chilean Altiplano. All individuals analyzed had a diploid number of 48 chromosomes. C-banding identified constitutive heterochromatin mainly in the pericentromeric region of most chromosomes, especially a GC-rich heterochromatic block of the short arm of pair 3. FISH assay with an 18S probe confirmed the location of the NOR in pair 3 and revealed that the minor rDNA cluster occurs interstitially on the long arm of pair 2. Dual FISH identified a single block of U2 snDNA sequences in the pericentromeric regions of a subtelocentric chromosome pair, while histone H3 sites were observed as small signals scattered in throughout the all chromosomes. This work represents the first effort to document the physical organization of the repetitive fraction of the Orestias genome. These data will improve our understanding of the chromosomal evolution of a genus facing serious conservation problems.
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Affiliation(s)
- Cristian Araya-Jaime
- Facultad de Medicina, Universidad de Chile, ICBM, Programa de Genética Humana, Casilla 70061, Santiago, Chile
| | - Natalia Lam
- Departamento de Producción Animal, Facultad de Ciencias Agronómicas, Universidad de Chile. Santa Rosa 11315, La Pintana, Santiago, Chile
| | - Irma Vila Pinto
- Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Casilla 653, CP 780-0024, Santiago, Chile
| | - Marco A. Méndez
- Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Casilla 653, CP 780-0024, Santiago, Chile
| | - Patricia Iturra
- Facultad de Medicina, Universidad de Chile, ICBM, Programa de Genética Humana, Casilla 70061, Santiago, Chile
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Malato G, Shervette VR, Navarrete Amaya R, Valdiviezo Rivera J, Nugra Salazar F, Calle Delgado P, Karpan KC, Aguirre WE. Parallel body shape divergence in the Neotropical fish genus Rhoadsia (Teleostei: Characidae) along elevational gradients of the western slopes of the Ecuadorian Andes. PLoS One 2017; 12:e0179432. [PMID: 28658255 PMCID: PMC5489170 DOI: 10.1371/journal.pone.0179432] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Accepted: 05/29/2017] [Indexed: 12/26/2022] Open
Abstract
Neotropical mountain streams are important contributors of biological diversity. Two species of the characid genus Rhoadsia differing for an ecologically important morphological trait, body depth, have been described from mountain streams of the western slopes of the Andes in Ecuador. Rhoadsia altipinna is a deeper-bodied species reported from low elevations in southwestern Ecuador and northern Peru, and Rhoadsia minor is a more streamlined species that was described from high elevations (>1200 m) in the Esmeraldas drainage in northwestern Ecuador. Little is known about these species and their validity as distinct species has been questioned. In this study, we examine how their body shape varies along replicated elevational gradients in different drainages of western Ecuador using geometric morphometrics and the fineness ratio. We also use sequences of the mitochondrial cytochrome oxidase c I gene and the second intron of the S7 nuclear gene to examine whether genetic data are consistent with the existence of two species. We found that body depth varies continuously among populations within drainages as a function of elevation, and that body shape overlaps among drainages, such that low elevation populations of R. minor in the Esmeraldas drainage have similar body depths to higher elevation R. altipinna in southern drainages. Although a common general trend of declining body depth with elevation is clear, the pattern and magnitude of body shape divergence differed among drainages. Sequencing of mitochondrial and nuclear genes failed to meet strict criteria for the recognition of two species (e.g., reciprocal monophyly and deep genetic structure). However, there was a large component of genetic variation for the COI gene that segregated among drainages, indicating significant genetic divergence associated with geographic isolation. Continued research on Rhoadsia in western Ecuador may yield significant insight into adaptation and speciation in Neotropical mountain streams.
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Affiliation(s)
- Grace Malato
- Department of Biological Sciences, DePaul University, Chicago, Illinois, United States of America
| | - Virginia R. Shervette
- Department of Biology/Geology, University of South Carolina, Aiken, South Carolina, United States of America
| | | | | | - Fredy Nugra Salazar
- Laboratorio de Zoología de Vertebrados de la Universidad del Azuay, Cuenca, Ecuador
| | - Paola Calle Delgado
- Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, Guayaquil, Ecuador
| | - Kirby C. Karpan
- Department of Biological Sciences, DePaul University, Chicago, Illinois, United States of America
| | - Windsor E. Aguirre
- Department of Biological Sciences, DePaul University, Chicago, Illinois, United States of America
- * E-mail:
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Barreto SB, Cioffi MB, Medrado AS, Silva AT, Affonso PRAM, Diniz D. Allopatric chromosomal variation in Nematocharax venustus Weitzman, Menezes & Britski, 1986 (Actinopterygii: Characiformes) based on mapping of repetitive sequences. NEOTROPICAL ICHTHYOLOGY 2016. [DOI: 10.1590/1982-0224-20150141] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT Characiformes is the most cytogenetically studied group of freshwater Actinopterygii, but karyotypical data of several taxa remain unknown. This is the case of Nematocharax , regarded as a monotypic genus and characterized by marked sexual dimorphism. Therefore, we provide the first cytogenetic report of allopatric populations of Nematocharax venustus based on distinct methods of chromosomal banding and fluorescence in situ hybridization (FISH) with repetitive DNA probes (18S and 5S rDNA). The karyotype macrostructure was conserved in all specimens and populations, independently on sex, since they shared a diploid number (2n) of 50 chromosomes divided into 8m+26sm+14st+2a. The heterochromatin was mainly distributed at pericentromeric regions and base-specific fluorochrome staining revealed a single pair bearing GC-rich sites, coincident with nucleolar organizer regions (NORs). On the other hand, interpopulation variation in both number and position of repetitive sequences was observed, particularly in relation to 5S rDNA. Apparently, the short life cycles and restricted dispersal of small characins, such as N. venustus , might have favored the divergence of repetitive DNA among populations, indicating that this species might encompass populations with distinct evolutionary histories, which has important implications for conservation measures.
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Affiliation(s)
| | | | | | - André T. Silva
- Universidade Estadual Paulista Júlio de Mesquita Filho, Brazil
| | | | - Débora Diniz
- Universidade Estadual do Sudoeste da Bahia, Brazil
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