Using DNA metabarcoding for assessing chironomid diversity and community change in mosquito controlled temporary wetlands

How non-target chironomid communities respond to mosquito control: Integrating DNA metabarcoding and joint species distribution modelling

The conservation and management of riparian ecosystems rely on understanding the ecological consequences of anthropogenic stressors that impact natural communities. In this context, studies investigating the effects of anthropogenic stressors require reliable methods capable of mapping the relationships between taxa occurrence or abundance and environmental predictors within a spatio-temporal framework. Here, we present an integrative approach using DNA metabarcoding and Hierarchical Modelling of Species Communities (HMSC) to unravel the intricate dynamics and resilience of chironomid communities exposed to Bacillus thuringiensis var. israelensis (Bti). Chironomid emergence was sampled from a total of 12 floodplain pond mesocosms, half of which received Bti treatment, during a 16-week period spanning spring and summer of 2020. Subsequently, we determined the community compositions of chironomids and examined their genus-specific responses to the Bti treatment, considering their phylogenetic affiliations and ecological traits of the larvae. Additionally, we investigated the impact of the Bti treatment on the body size distribution of emerging chironomids. Our study revealed consistent responses to Bti among different chironomid genera, indicating that neither phylogenetic affiliations nor larval feeding strategies significantly contributed to the observed patterns. Both taxonomic and genetic diversity were positively correlated with the number of emerged individuals. Furthermore, our findings demonstrated Bti-related effects on chironomid body size distribution, which could have relevant implications for size-selective terrestrial predators. Hence, our study highlights the value of employing a combination of DNA metabarcoding and HMSC to unravel the complex dynamics of Bti-related non-target effects on chironomid communities. The insights gained from this integrated framework contribute to our understanding of the ecological consequences of anthropogenic stressors and provide a foundation for informed decision-making regarding the conservation and management of riparian ecosystems.

DNA metabarcoding improves the detection of multiple stressor responses of stream invertebrates to increased salinity, fine sediment deposition and reduced flow velocity

Worldwide, multiple stressors affect stream ecosystems and frequently lead to complex and non-linear biological responses. These combined stressor effects on ecologically diverse and functionally important macroinvertebrate communities are often difficult to assess, in particular species-specific responses across many species and effects of different stressors and stressor levels in concert. A central limitation in many studies is the taxonomic resolution applied for specimen identification. DNA metabarcoding can resolve taxonomy and provide greater insights into multiple stressor effects. This was detailed by results of a recent multiple stressor mesocosm experiment, where only for the dipteran family Chironomidae 183 Operational Taxonomic Units (OTUs) could be distinguished. Numerous OTUs showed very different response patterns to multiple stressors. In this study, we applied DNA metabarcoding to assess multiple stressor effects on all non-chironomid invertebrates from the same experiment. In the experiment, we applied three stressors (increased salinity, deposited fine sediment, reduced flow velocity) in a full-factorial design. We compared stressor responses inferred through DNA metabarcoding of the mitochondrial COI gene to responses based on morphotaxonomic taxa lists. We identified 435 OTUs, of which 122 OTUs were assigned to EPT (Ephemeroptera, Plecoptera, Trichoptera) taxa. The most common 35 OTUs alone showed 15 different response patterns to the experimental manipulation, ranging from insensitivity to any applied stressor to sensitivity to single and multiple stressors. These response patterns even comprised differences within one family. The species-specific taxonomic resolution and the inferred response patterns to stressors highlights the potential of DNA metabarcoding in the context of multiple stressor research, even for well-known taxa such as EPT species.

Environmental and socioeconomic effects of mosquito control in Europe using the biocide Bacillus thuringiensis subsp. israelensis (Bti)

Bacillus thuringiensis subsp. israelensis (Bti) has been used in mosquito control programs to reduce nuisance in Europe for decades and is generally considered an environmentally-safe, effective and target-specific biocide. However, the use of Bti is not uncontroversial. Target mosquitoes and affected midges represent an important food source for many aquatic and terrestrial predators and reduction of their populations is likely to result in food-web effects at higher trophic levels. In the context of global biodiversity loss, this appears particularly critical since treated wetlands are often representing conservation areas. In this review, we address the current large-scale use of Bti for mosquito nuisance control in Europe, provide a description of its regulation followed by an overview of the available evidence on the parameters that are essential to evaluate Bti use in mosquito control. Bti accumulation and toxin persistence could result in a chronic expose of mosquito populations ultimately affecting their susceptibility, although observed increase in resistance to Bti in mosquito populations is low due to the four toxins involved. A careful independent monitoring of mosquito susceptibility, using sensitive bioassays, is mandatory to detect resistance development timely. Direct Bti effects were documented for non-target chironomids and other invertebrate groups and are discussed for amphibians. Field studies revealed contrasting results on possible impacts on chironomid abundances. Indirect, food-web effects were rarely studied in the environment. Depending on study design and duration, Bti effects on higher trophic levels were demonstrated or not. Further long-term field studies are needed, especially with observations of bird declines in Bti-treated wetland areas. Socio-economic relevance of mosquito control requires considering nuisance, vector-borne diseases and environmental effects jointly. Existing studies indicate that a majority of the population is concerned regarding potential environmental effects of Bti mosquito control and that they are willing to pay for alternative, more environment-friendly techniques.

Toxicity of microbial insecticides toward the non-target freshwater insect Chironomus xanthus

BACKGROUND

Commercial formulations based on Bacillus thuringiensis subs. kurstaki (Btk) and Beauveria bassiana (Bb) are commonly used microbial insecticides in Brazil and other tropical regions. However, and despite being considered environmentally friendly, their use generates concerns regarding possible adverse ecological effects in freshwater ecosystems. Here, we evaluate the effects of these bioinsecticides on the tropical aquatic dipteran Chironomus xanthus under laboratory conditions.

RESULTS

After laboratory exposures to these compounds 48-h median lethal concentration (LC₅₀ ) values of 1534 μg a.i./L for Btk and of 6.35 μg a.i./L for Bb were estimated. Chronic assays revealed different sublethal effects: Btk-based bioinsecticide exposure reduced C. xanthus growth [lowest observed effect concentration (LOEC) was 126 μg a.i./L for head width], decreased emergence rate (LOEC = 8 μg a.i./L) and increased immunological response (LOEC = 50 μg a.i./L) measured as total hemocyte count in larvae hemolymph. Exposure to low concentrations of Bb-based insecticide also reduced C. xanthus growth (LOEC = 0.07 μg a.i./L for larvae body length measurements), and emergence rate (LOEC = 0.28 μg a.i./L), despite no clear effects on the total hemocyte counts.

CONCLUSION

Our results suggest that low concentrations of Btk and Bb bioinsecticides are toxic to C. xanthus. Given their widespread use and occurrence in tropical freshwater systems, research is needed to evaluate the potential effects of these compounds concerning natural freshwater insect communities and ecosystem functioning. © 2019 Society of Chemical Industry.

Lethal and sublethal toxicity assessment of Bacillus thuringiensis var. israelensis and Beauveria bassiana based bioinsecticides to the aquatic insect Chironomus riparius

Despite being considered environmentally safe, a deeper environmental risk assessment is needed for microbial insecticides; special attention should be devoted to their sublethal toxicity to non-target species. This study evaluated effects of VectoBac® 12AS - VB (based on the bacterium Bacillus thurigiensis var. israelensis) and Naturalis®-L - NL (based on the fungus Beauveria bassiana) on the aquatic insect Chironomus riparius life-history and biochemical responses. Acute tests estimated a 48 h-LC₅₀ (median lethal concentration) of 1.85 μg/L (VB) and 34.7 mg/L (NL). Under sublethal exposure, VB decreased adults' emergence (LOEC - lowest observed effect concentration of 80 ng/L) while NL impaired larval growth (LOEC of 0.32 mg/L) and delayed emergence (LOEC of 2 mg/L for males and 0.8 mg/L for females). Despite not being monotonic, phenoloxidase activity increased (LOEC of 20 ng/L (VB) and 2 mg/L (NL)), suggesting activation of the immune system. There were no indications of oxidative damage nor neurotoxicity. Catalase activity was stimulated with all VB treatments, possibly associated with detoxification of immune response products. Under NL exposure, glutathione-S-transferase activity increased but did not show a dose-dependent response and, total glutathione decreased in the highest concentration. Exposure to both formulations caused the increase in protein content, while carbohydrate and lipids were not altered. This study revealed the susceptibility of C. riparius to VB and NL at concentrations below the ones recommended for field application, with potential population-level effects. These results add important information for the risk assessment of these microbial insecticides in aquatic ecosystems, considering relevant sublethal endpoints and raising concern about the adverse effects on non-target aquatic organisms.

Mosquito control based on Bacillus thuringiensis israelensis (Bti) interrupts artificial wetland food chains

The biocide Bacillus thuringiensis israelensis (Bti) has become the most commonly used larvicide to control mosquitoes in seasonal wetlands. Although Bti is considered non-toxic to most aquatic organisms, the non-biting chironomids show high susceptibilities towards Bti. As chironomids are a key element in wetland food webs, major declines in their abundance could lead to indirect effects that may be passed through aquatic and terrestrial food chains. We conducted two mesocosm experiments to address this hypothesis by assessing direct and indirect effects of Bti-modified availability of macroinvertebrate and zooplankton food resources on the predatory larvae of palmate and smooth newts (Urodelans: Lissotriton helveticus, Lissotriton vulgaris). We examined newt survival rates and dietary composition by means of stable isotope (δ¹⁵N and δ¹³C) analysis in the presence of Bti treatment and a predator (Odonata: Aeshna cyanea). We assessed palmate newts' body size at and time to metamorphosis while developing in Bti treated mesocosms. Chironomid larvae were the most severely affected aquatic invertebrates in all Bti treated food chains and experienced abundance reductions by 50 to 87%. Moreover, stable isotope analysis revealed that chironomids were preferred over other invertebrates and comprised the major part in newts' diet (56%) regardless of their availability. The dragonfly A. cyanea decreased survival of newt larvae by 27% in Bti treated mesocosms showing affected chironomid abundances. Increasing intraguild predation is most likely favored by the Bti-induced reduction of alternative prey such as chironomid larvae. The decreased food availability after Bti treatment led to slightly smaller L. helveticus metamorphs while their developmental time was not affected. Our findings highlight the crucial role of chironomids in the food webs of freshwater ecosystems. We are also emphasizing the importance of reconsidering human-induced indirect effects of mosquito control on valuable wetland ecosystems particularly in the context of worldwide amphibian and insect declines.

Adverse effects of mosquito control using Bacillus thuringiensis var. israelensis: Reduced chironomid abundances in mesocosm, semi-field and field studies

The ecological consequences of mosquito control using the larvicide Bacillus thuringiensis israelensis (Bti) are still a matter of debate especially when it comes to adverse effects on non-target but susceptible non-biting midges (Chironomidae). Our work aimed to assess the effects of Bti applied in operational mosquito control rates on chironomid abundances in seasonal flooded freshwater wetlands. We assessed the invertebrate community alongside with aquatic insect emergence rates in studies with increasing ecotoxicological complexity, ranging from artificial mesocosms, over a semi-field approach using enclosures to natural conditions in field studies. Study sites represented different habitats (forest, meadow, floodplain) with regularly Bti treated and untreated temporal wetlands that are located in the Upper Rhine Valley, Germany. Larval chironomids were the most affected group of organism in the altered aquatic invertebrate communities of the Bti treated pond mesocosms. The larvae of the chironomid subfamilies Chironominae and Orthocladiinae were affected by Bti field concentrations while emergence rates of Tanypodinae did not change. The Bti treatment significantly reduced the targeted mosquitoes in the mesocosm and in the field studies. At the same time, however, the application of operational Bti field rates reduced overall chironomid emergence rates to about half of the control rates. The observed abundance reductions occurred independently of the ecological complexity in the study design in artificial mesocosms as well as realistic field conditions. The considerable reduction of the abundant non-target chironomids along with mosquitoes may subsequently lead to unwanted indirect negative effects for birds, bats and other aquatic organisms feeding on midges. Hence, large-scale applications of Bti for mosquito control in seasonal wetlands should be considered more carefully. This is of special importance when these wetlands are parts of national parks, nature reserves or Natura 2000 sites that were created for the protection of nature and environmental health.

DNA metabarcoding from sample fixative as a quick and voucher-preserving biodiversity assessment method

Metabarcoding is a powerful, increasingly popular tool for biodiversity assessment, but it still suffers from some drawbacks (specimen destruction, separation, and size sorting). In the present study, we tested a non-destructive protocol that excludes any sample sorting, where the ethanol used for sample preserving is filtered and DNA is extracted from the filter for subsequent DNA metabarcoding. When tested on macroinvertebrate mock communities, the method was widely successful but was unable to reliably detect mollusc taxa. Three different protocols (no treatment, shaking, and freezing) were successfully applied to increase DNA release to the fixative. The protocols resulted in similar success in taxa detection (6.8–7 taxa) but differences in read numbers assigned to taxa of interest (33.8%–93.7%). In comparison to conventional bulk sample metabarcoding of environmental samples, taxa with pronounced exoskeleton and small-bodied taxa were especially underrepresented in ethanol samples. For EPT (Ephemeroptera, Plecoptera, Trichoptera) taxa, which are important for determining stream ecological status, the methods detected 46 OTUs in common, with only 4 unique to the ethanol samples and 10 to the bulk samples. These results indicate that fixative-based metabarcoding is a non-destructive, time-saving alternative for biodiversity assessments focussing on taxa used for ecological status determination. However, for a comprehensive assessment on total invertebrate biodiversity, the method may not be sufficient, and conventional bulk sample metabarcoding should be applied.