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For: Nagai S, Sildever S, Nishi N, Tazawa S, Basti L, Kobayashi T, Ishino Y. Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcoding. MBMG 2022. [DOI: 10.3897/mbmg.6.77704] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
Number Cited by Other Article(s)
1
Scott G, Ryder D, Buckley M, Hill R, Treagus S, Stapleton T, Walker DI, Lowther J, Batista FM. Long Amplicon Nanopore Sequencing for Dual-Typing RdRp and VP1 Genes of Norovirus Genogroups I and II in Wastewater. FOOD AND ENVIRONMENTAL VIROLOGY 2024:10.1007/s12560-024-09611-5. [PMID: 39240456 DOI: 10.1007/s12560-024-09611-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 08/15/2024] [Indexed: 09/07/2024]
2
Ota Y, Yasunaga K, Mahazu S, Prah I, Nagai S, Hayashi T, Suzuki M, Yoshida M, Hoshino Y, Akeda Y, Suzuki T, Gu Y, Saito R. Comparative evaluation of analytical pipelines for illumina short- and nanopore long-read 16S rRNA gene amplicon sequencing with mock microbial communities. J Microbiol Methods 2024;221:106929. [PMID: 38599390 DOI: 10.1016/j.mimet.2024.106929] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 04/04/2024] [Accepted: 04/06/2024] [Indexed: 04/12/2024]
3
Serrana JM, Watanabe K. Haplotype-level metabarcoding of freshwater macroinvertebrate species: A prospective tool for population genetic analysis. PLoS One 2023;18:e0289056. [PMID: 37486933 PMCID: PMC10365294 DOI: 10.1371/journal.pone.0289056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Accepted: 07/10/2023] [Indexed: 07/26/2023]  Open
4
Namias A, Sahlin K, Makoundou P, Bonnici I, Sicard M, Belkhir K, Weill M. Nanopore sequencing of PCR products enables multicopy gene family reconstruction. Comput Struct Biotechnol J 2023;21:3656-3664. [PMID: 37533804 PMCID: PMC10393513 DOI: 10.1016/j.csbj.2023.07.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 07/05/2023] [Accepted: 07/11/2023] [Indexed: 08/04/2023]  Open
5
Watanabe T, Hirai J, Sildever S, Tadokoro K, Hidaka K, Tanita I, Nishiuchi K, Iguchi N, Kasai H, Nishi N, Katakura S, Taniuchi Y, Kodama T, Tashiro S, Nakae M, Okazaki Y, Kitajima S, Sogawa S, Hasegawa T, Azumaya T, Hiroe Y, Ambe D, Setou T, Ito D, Kusaka A, Okunishi T, Tanaka T, Kuwata A, Hasegawa D, Kakehi S, Shimizu Y, Nagai S. Improving taxonomic classification of marine zooplankton by molecular approach: registration of taxonomically verified 18S and 28S rRNA gene sequences. PeerJ 2023;11:e15427. [PMID: 37334134 PMCID: PMC10276563 DOI: 10.7717/peerj.15427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Accepted: 04/25/2023] [Indexed: 06/20/2023]  Open
6
Ahmad S, Ali SF, Iftikhar S, Rashid N. Engineering a DNA polymerase from Pyrobaculum calidifontis for improved activity, processivity and extension rate. Int J Biol Macromol 2023;233:123545. [PMID: 36740112 DOI: 10.1016/j.ijbiomac.2023.123545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 01/20/2023] [Accepted: 01/31/2023] [Indexed: 02/05/2023]
7
Minamoto T. Environmental DNA analysis for macro-organisms: species distribution and more. DNA Res 2022;29:6598799. [PMID: 35652724 PMCID: PMC9187915 DOI: 10.1093/dnares/dsac018] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 05/31/2022] [Indexed: 11/14/2022]  Open
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