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Noli N, Cecchetto M, Guzzi A, Grillo M, Cometti V, Schiaparelli S. New distributional records of Southern Ocean Isopoda based on vouchers from the Italian National Antarctic Museum (MNA, Section of Genoa). Biodivers Data J 2024; 12:e127689. [PMID: 39070715 PMCID: PMC11272995 DOI: 10.3897/bdj.12.e127689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 07/11/2024] [Indexed: 07/30/2024] Open
Abstract
Background The order Isopoda Latreille, 1816 consists of species occurring in terrestrial, marine and freshwater environments. In the Southern Ocean (SO), this group is amongst the most speciose and occur at all depths. Isopoda biogeography, despite being studied since the first Antarctic expeditions, is still poorly known from a geographical point of view and shows large occurrence gaps for some groups in specific sectors of the SO. In this paper, we update the isopod checklists of the Ross Sea (RS) and of some peri-Antarctic areas, such as the South Orkney Islands (SOI) and the South Sandwich Islands (SSI), based on the study of museum vouchers curated by the Italian National Antarctic Museum (MNA, Section of Genoa). New information A total of 279 MNA samples from 15 different expeditions were studied. From this material, consisting of 419 specimens, 41 accepted species distributed in 24 families and 51 genera were identified. Comparing this newly-obtained information with the GBIF (Global Biodiversity Information Facility) and OBIS (Ocean Biodiversity Information System) portal, 15 species are here reported for the first time in the Ross Sea, with five new records in the Ross Sea Marine Protected Area. All records are new for the Terra Nova Bay area, for which a checklist of this group has never been produced before.
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Affiliation(s)
- Nicholas Noli
- Department of Physical Sciences, Earth and Environment (DSFTA) - University of Siena, Siena, ItalyDepartment of Physical Sciences, Earth and Environment (DSFTA) - University of SienaSienaItaly
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
| | - Matteo Cecchetto
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
- Department of Earth, Environmental and Life Sciences (DISTAV) - University of Genoa, Genoa, ItalyDepartment of Earth, Environmental and Life Sciences (DISTAV) - University of GenoaGenoaItaly
| | - Alice Guzzi
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
- Department of Earth, Environmental and Life Sciences (DISTAV) - University of Genoa, Genoa, ItalyDepartment of Earth, Environmental and Life Sciences (DISTAV) - University of GenoaGenoaItaly
| | - Marco Grillo
- Department of Physical Sciences, Earth and Environment (DSFTA) - University of Siena, Siena, ItalyDepartment of Physical Sciences, Earth and Environment (DSFTA) - University of SienaSienaItaly
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
| | - Valentina Cometti
- Department of Physical Sciences, Earth and Environment (DSFTA) - University of Siena, Siena, ItalyDepartment of Physical Sciences, Earth and Environment (DSFTA) - University of SienaSienaItaly
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
| | - Stefano Schiaparelli
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
- Department of Earth, Environmental and Life Sciences (DISTAV) - University of Genoa, Genoa, ItalyDepartment of Earth, Environmental and Life Sciences (DISTAV) - University of GenoaGenoaItaly
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Isola D, Lee HJ, Chung YJ, Zucconi L, Pelosi C. Once upon a Time, There Was a Piece of Wood: Present Knowledge and Future Perspectives in Fungal Deterioration of Wooden Cultural Heritage in Terrestrial Ecosystems and Diagnostic Tools. J Fungi (Basel) 2024; 10:366. [PMID: 38786721 PMCID: PMC11122135 DOI: 10.3390/jof10050366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 04/22/2024] [Accepted: 05/15/2024] [Indexed: 05/25/2024] Open
Abstract
Wooden Cultural Heritage (WCH) represents a significant portion of the world's historical and artistic heritage, consisting of immovable and movable artefacts. Despite the expertise developed since ancient times to enhance its durability, wooden artefacts are inevitably prone to degradation. Fungi play a pivotal role in the deterioration of WCH in terrestrial ecosystems, accelerating its decay and leading to alterations in color and strength. Reviewing the literature of the last 25 years, we aimed to provide a comprehensive overview of fungal diversity affecting WCH, the biochemical processes involved in wood decay, and the diagnostic tools available for fungal identification and damage evaluation. Climatic conditions influence the occurrence of fungal species in threatened WCH, characterized by a prevalence of wood-rot fungi (e.g., Serpula lacrymans, Coniophora puteana) in architectural heritage in temperate and continental climates and Ascomycota in indoor and harsh environments. More efforts are needed to address the knowledge fragmentation concerning biodiversity, the biology of the fungi involved, and succession in the degradative process, which is frequently centered solely on the main actors. Multidisciplinary collaboration among engineers, restorers, and life sciences scientists is vital for tackling the challenges posed by climate change with increased awareness. Traditional microbiology and culture collections are fundamental in laying solid foundations for a more comprehensive interpretation of big data.
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Affiliation(s)
- Daniela Isola
- Department of Economics, Engineering, Society and Business Organization (DEIM), University of Tuscia, Largo dell’Università Snc, 01100 Viterbo, Italy;
| | - Hyun-Ju Lee
- Institute of Preventive Conservation for Cultural Heritage, Korea National University of Cultural Heritage, Buyeo 33115, Republic of Korea;
| | - Yong-Jae Chung
- Department of Heritage Conservation and Restoration, Graduate School of Cultural Heritage, Korea National University of Cultural Heritage, Buyeo 33115, Republic of Korea;
| | - Laura Zucconi
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Largo dell’Università Snc, 01100 Viterbo, Italy;
| | - Claudia Pelosi
- Department of Economics, Engineering, Society and Business Organization (DEIM), University of Tuscia, Largo dell’Università Snc, 01100 Viterbo, Italy;
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Grillo M, Bonello G, Cecchetto M, Guzzi A, Noli N, Cometti V, Schiaparelli S. Planktonic, benthic and sympagic copepods collected from the desalination unit of Mario Zucchelli Research Station in Terra Nova Bay (Ross Sea, Antarctica). Biodivers Data J 2024; 12:e119633. [PMID: 38606183 PMCID: PMC11008244 DOI: 10.3897/bdj.12.e119633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Accepted: 02/28/2024] [Indexed: 04/13/2024] Open
Abstract
Background Distributional data on planktonic, benthic and sympagic copepods collected in the framework of the XXXIVth Expeditions of the Italian National Antarctic Programme (PNRA) to the Ross Sea sector from 2018-2019 are here provided. These occurrences correspond to specimens collected from the 25 μm filters used in the desalination plant of the Italian research station "Mario Zucchelli" (MZS), located in the Terra Nova Bay area (TNB; Ross Sea, Antarctica). This dataset is a contribution to the Antarctic Biodiversity Portal, the thematic Antarctic node for both the Ocean Biogeographic Information System (AntOBIS) and the Global Biodiversity Information Facility Antarctic Biodiversity Information Facility (ANTABIF). The dataset was uploaded and integrated with the SCAR-AntOBIS database (the geospatial component of SCAR-MarBIN). Please follow the guidelines from the SCAR Data Policy (ISSN 1998-0337) when using the data. If you have any questions regarding this dataset, please contact us via the contact information provided in the metadata or via data-biodiversity-aq@naturalsciences.be. Issues with the dataset can be reported at the biodiversity-aq GitHub project. New information We describe the diversity of marine copepods Terra Nova Bay sampled by the filters installed in the desalination unit (DU) of the Italian research station "Mario Zucchelli" described in recent work. The opening of the intake pipe of the DU is positioned at a depth of 4 m and allowed a total of 2,116 specimens to be sampled and recognised. In addition, new occurrence records of copepod genera and species are reported in the same zone. We provide an overview of the marine copepod diversity reported for TNB. The total of 2,116 individuals corresponds to 14 genera and 15 species and is represented by 136 occurrence records in this dataset. Around 52% of the total number of species are new records for the TNB area. The publication of this data paper was funded by the Belgian Science Policy Office (BELSPO, contract n°FR/36/AN1/AntaBIS) in the Framework of EU-Lifewatch as a contribution to the SCAR Antarctic biodiversity portal (biodiversity.aq).
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Affiliation(s)
- Marco Grillo
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
- Department of Physical Sciences, Earth and Environment (DSFTA) - University of Siena, Siena, ItalyDepartment of Physical Sciences, Earth and Environment (DSFTA) - University of SienaSienaItaly
| | - Guido Bonello
- GeoScape Society Cooperative, Genoa, ItalyGeoScape Society CooperativeGenoaItaly
| | - Matteo Cecchetto
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
- Department of Earth, Environmental and Life Sciences (DISTAV) - University of Genoa, Genoa, ItalyDepartment of Earth, Environmental and Life Sciences (DISTAV) - University of GenoaGenoaItaly
| | - Alice Guzzi
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
- Department of Earth, Environmental and Life Sciences (DISTAV) - University of Genoa, Genoa, ItalyDepartment of Earth, Environmental and Life Sciences (DISTAV) - University of GenoaGenoaItaly
| | - Nicholas Noli
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
- Department of Physical Sciences, Earth and Environment (DSFTA) - University of Siena, Siena, ItalyDepartment of Physical Sciences, Earth and Environment (DSFTA) - University of SienaSienaItaly
| | - Valentina Cometti
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
- Department of Physical Sciences, Earth and Environment (DSFTA) - University of Siena, Siena, ItalyDepartment of Physical Sciences, Earth and Environment (DSFTA) - University of SienaSienaItaly
| | - Stefano Schiaparelli
- Italian National Antarctic Museum (MNA, section of Genoa), Genoa, ItalyItalian National Antarctic Museum (MNA, section of Genoa)GenoaItaly
- Department of Earth, Environmental and Life Sciences (DISTAV) - University of Genoa, Genoa, ItalyDepartment of Earth, Environmental and Life Sciences (DISTAV) - University of GenoaGenoaItaly
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Canini F, Borruso L, Newsham KK, D'Alò F, D'Acqui LP, Zucconi L. Wide divergence of fungal communities inhabiting rocks and soils in a hyper-arid Antarctic desert. Environ Microbiol 2023; 25:3671-3682. [PMID: 37964667 DOI: 10.1111/1462-2920.16534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 10/24/2023] [Indexed: 11/16/2023]
Abstract
Highly simplified microbial communities colonise rocks and soils of continental Antarctica ice-free deserts. These two habitats impose different selection pressures on organisms, yet the possible filtering effects on the diversity and composition of microbial communities have not hitherto been fully characterised. We hence compared fungal communities in rocks and soils in three localities of inner Victoria Land. We found low fungal diversity in both substrates, with a mean species richness of 28 across all samples, and significantly lower diversity in rocks than in soils. Rock and soil communities were strongly differentiated, with a multinomial species classification method identifying just three out of 328 taxa as generalists with no affinity for either substrate. Rocks were characterised by a higher abundance of lichen-forming fungi (typically Buellia, Carbonea, Pleopsidium, Lecanora, and Lecidea), possibly owing to the more protected environment and the porosity of rocks permitting photosynthetic activity. In contrast, soils were dominated by obligate yeasts (typically Naganishia and Meyerozyma), the abundances of which were correlated with edaphic factors, and the black yeast Cryomyces. Our study suggests that strong differences in selection pressures may account for the wide divergences of fungal communities in rocks and soils of inner Victoria Land.
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Affiliation(s)
- Fabiana Canini
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Luigimaria Borruso
- Faculty of Agricultural, Environmental and Food Sciences, Free University of Bozen, Bozen-Bolzano, Italy
| | - Kevin K Newsham
- British Antarctic Survey (BAS), Natural Environment Research Council (NERC), Cambridge, UK
| | - Federica D'Alò
- Terrestrial Ecosystems Research Institute (IRET), National Research Council (CNR), Porano (TR), Italy
| | - Luigi P D'Acqui
- Institute of Polar Sciences (ISP), National Research Council (CNR), Messina, Italy
| | - Laura Zucconi
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
- Terrestrial Ecosystems Research Institute (IRET), National Research Council (CNR), Sesto Fiorentino (FI), Italy
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Chen J, Li Z, Xu D, Xiao Q, Liu H, Li X, Chao L, Qu H, Zheng Y, Liu X, Wang P, Bao Y. Patterns and drivers of microbiome in different rock surface soil under the volcanic extreme environment. IMETA 2023; 2:e122. [PMID: 38867933 PMCID: PMC10989942 DOI: 10.1002/imt2.122] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 04/22/2023] [Accepted: 05/23/2023] [Indexed: 06/14/2024]
Abstract
Soil microbial communities were investigated under the volcanic extreme environment. Soil bacterial networks exhibited higher stability than fungal networks. Holocene granite had a more complex microbial network than basalt. Soil pH and total protein were key drivers of microbial network stability.
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Affiliation(s)
- Jin Chen
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life SciencesInner Mongolia UniversityHohhotPeople's Republic of China
- National Engineering Laboratory of Crop Stress Resistance BreedingAnhui Agricultural UniversityHefeiPeople's Republic of China
| | - Zishan Li
- National Engineering Laboratory of Crop Stress Resistance BreedingAnhui Agricultural UniversityHefeiPeople's Republic of China
| | - Daolong Xu
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of BiotechnologyJiangnan UniversityWuxiPeople's Republic of China
| | - Qingchen Xiao
- National Engineering Laboratory of Crop Stress Resistance BreedingAnhui Agricultural UniversityHefeiPeople's Republic of China
| | - Haijing Liu
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life SciencesInner Mongolia UniversityHohhotPeople's Republic of China
| | - Xiaoyu Li
- National Engineering Laboratory of Crop Stress Resistance BreedingAnhui Agricultural UniversityHefeiPeople's Republic of China
| | - Lumeng Chao
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life SciencesInner Mongolia UniversityHohhotPeople's Republic of China
| | - Hanting Qu
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life SciencesInner Mongolia UniversityHohhotPeople's Republic of China
| | - Yaxin Zheng
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life SciencesInner Mongolia UniversityHohhotPeople's Republic of China
| | - Xinyan Liu
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life SciencesInner Mongolia UniversityHohhotPeople's Republic of China
| | - Pengfei Wang
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life SciencesInner Mongolia UniversityHohhotPeople's Republic of China
| | - Yuying Bao
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life SciencesInner Mongolia UniversityHohhotPeople's Republic of China
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Black Fungi and Stone Heritage Conservation: Ecological and Metabolic Assays for Evaluating Colonization Potential and Responses to Traditional Biocides. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12042038] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Identifying species involved in biodeterioration processes is helpful, however further effort is needed to assess their ecological requirements and actual activity. Black fungi (BF) represent one of the most underestimated threats to stone cultural heritage in the Mediterranean basin; they are difficult to kill or remove due to their ability to grow inside the rock and cope with several stresses. Despite this, little is known about BF and factors favoring their growth on stone surfaces. Eighteen BF species were here investigated for temperature and salt tolerance, and metabolic traits by plate assays. The relation between some highly damaged monuments and their BF settlers was assessed using X-ray diffraction analysis, mercury intrusion porosimetry, and SEM. The sensitiveness to four commonly used traditional biocides was also tested. All strains were able to grow within the range of 5–25 °C and in the presence of 3.5% NaCl. Instrumental analyses were fundamental in discovering the relation between halophilic strains and weathered marble sculptures. The acid, cellulase, esterase, and protease production recorded proved BF’s potential to produce a chemical action on carbonate stones and likely affect other materials/historical artefacts. Besides, the use of carboxymethylcellulose and Tween 20 should be evaluated in restoration practice to prevent tertiary bioreceptivity. Agar diffusion tests helped identify the most resistant species to biocides, opening the perspective of its use as reference organisms in material testing procedures.
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Isola D, Scano A, Orrù G, Prenafeta-Boldú FX, Zucconi L. Hydrocarbon-Contaminated Sites: Is There Something More Than Exophiala xenobiotica? New Insights into Black Fungal Diversity Using the Long Cold Incubation Method. J Fungi (Basel) 2021; 7:jof7100817. [PMID: 34682237 PMCID: PMC8538888 DOI: 10.3390/jof7100817] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 09/22/2021] [Accepted: 09/24/2021] [Indexed: 01/22/2023] Open
Abstract
Human-made hydrocarbon-rich environments are important reservoirs of microorganisms with specific degrading abilities and pathogenic potential. In particular, black fungi are of great interest, but their presence in the environment is frequently underestimated because they are difficult to isolate. In the frame of a biodiversity study from fuel-contaminated sites involving 30 diesel car tanks and 112 fuel pump dispensers (52 diesel and 60 gasoline, respectively), a total of 181 black fungal strains were isolated. The long cold incubation (LCI) of water-suspended samples, followed by plating on Dichloran Rose Bengal Chloramphenicol Agar (DRBC), gave isolation yields up to six times (6.6) higher than those of direct plating on DRBC, and those of enrichment with a phenolic mix. The sequencing of ITS and LSU-rDNA confirmed the dominance of potentially pathogenic fungi from the family Herpotrichiellaceae and Exophiala xenobiotica. Moreover, other opportunistic species were found, including E. opportunistica, E. oligosperma, E. phaeomuriformis, and Rhinocladiella similis. The recurrent presence of E. crusticola, Knufia epidermidis, Aureobasidium melanogenum, Cladosporium spp., and Scolecobasidium spp. was also recorded. Interestingly, 12% of total isolates, corresponding to 50% of taxa found (16/32), represent new species. All the novel taxa in this study were isolated by LCI. These findings suggest that black fungal diversity in hydrocarbon-rich niches remains largely unexplored and that LCI can be an efficient tool for further investigations.
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Affiliation(s)
- Daniela Isola
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, 01100 Viterbo, Italy;
- Correspondence: ; Tel.: +39-0761-357138
| | - Alessandra Scano
- Department of Surgical Sciences, University of Cagliari, 09124 Cagliari, Italy; (A.S.); (G.O.)
| | - Germano Orrù
- Department of Surgical Sciences, University of Cagliari, 09124 Cagliari, Italy; (A.S.); (G.O.)
| | | | - Laura Zucconi
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, 01100 Viterbo, Italy;
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Albanese D, Coleine C, Rota-Stabelli O, Onofri S, Tringe SG, Stajich JE, Selbmann L, Donati C. Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages. MICROBIOME 2021; 9:63. [PMID: 33741058 PMCID: PMC7980648 DOI: 10.1186/s40168-021-01021-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Accepted: 02/02/2021] [Indexed: 05/25/2023]
Abstract
BACKGROUND Cryptoendolithic communities are microbial ecosystems dwelling inside porous rocks that are able to persist at the edge of the biological potential for life in the ice-free areas of the Antarctic desert. These regions include the McMurdo Dry Valleys, often accounted as the closest terrestrial counterpart of the Martian environment and thought to be devoid of life until the discovery of these cryptic life-forms. Despite their interest as a model for the early colonization by living organisms of terrestrial ecosystems and for adaptation to extreme conditions of stress, little is known about the evolution, diversity, and genetic makeup of bacterial species that reside in these environments. Using the Illumina Novaseq platform, we generated the first metagenomes from rocks collected in Continental Antarctica over a distance of about 350 km along an altitudinal transect from 834 up to 3100 m above sea level (a.s.l.). RESULTS A total of 497 draft bacterial genome sequences were assembled and clustered into 269 candidate species that lack a representative genome in public databases. Actinobacteria represent the most abundant phylum, followed by Chloroflexi and Proteobacteria. The "Candidatus Jiangella antarctica" has been recorded across all samples, suggesting a high adaptation and specialization of this species to the harshest Antarctic desert environment. The majority of these new species belong to monophyletic bacterial clades that diverged from related taxa in a range from 1.2 billion to 410 Ma and are functionally distinct from known related taxa. CONCLUSIONS Our findings significantly increase the repertoire of genomic data for several taxa and, to date, represent the first example of bacterial genomes recovered from endolithic communities. Their ancient origin seems to not be related to the geological history of the continent, rather they may represent evolutionary remnants of pristine clades that evolved across the Tonian glaciation. These unique genomic resources will underpin future studies on the structure, evolution, and function of these ecosystems at the edge of life. Video abstract.
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Affiliation(s)
- Davide Albanese
- Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38098 San Michele all’Adige, Italy
| | - Claudia Coleine
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell’Università, 01100 Viterbo, Italy
| | - Omar Rota-Stabelli
- Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38098 San Michele all’Adige, Italy
| | - Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell’Università, 01100 Viterbo, Italy
| | - Susannah G. Tringe
- Department of Energy Joint Genome Institute, One Cyclotron Road, Berkeley, CA 94720 USA
| | - Jason E. Stajich
- Department of Microbiology and Plant Pathology and Institute of Integrative Genome Biology, University of California, Watkins Drive 3401, Riverside, Riverside, CA 92507 USA
| | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell’Università, 01100 Viterbo, Italy
- Mycological Section, Italian Antarctic National Museum (MNA), Via al Porto Antico, 16128 Genoa, Italy
| | - Claudio Donati
- Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38098 San Michele all’Adige, Italy
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Abdel-Azeem AM, Abu-Elsaoud AM, Abo Nahas HH, Abdel-Azeem MA, Balbool BA, Mousa MK, Ali NH, Darwish AMG. Biodiversity and Industrial Applications of Genus Chaetomium. Fungal Biol 2021. [DOI: 10.1007/978-3-030-67561-5_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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10
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A Review on Sampling Techniques and Analytical Methods for Microbiota of Cultural Properties and Historical Architecture. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10228099] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
World cultural heritage suffers from deterioration caused by both natural and anthropogenic processes, among which microorganisms are significantly involved. Among the key issues of this topic, sampling techniques and analytical methods for revealing the microbiome are fundamental to obtaining useful results for understanding the key players and processes involved, and also for effective protection and management of the cultural heritage for humanity. A non-invasive and non-destructive sampling method is required for sampling of cultural properties prior to further analysis of the microbiome. One example is illustrated in this article. For many years, culture-dependent methods had been used before the invention of polymerase-chain reaction (PCR) methods and, more recently, specifically high-throughput next generation sequencing (NGS). NGS reveals the whole microbial community composition and the active microorganisms from genomic DNA and RNA, respectively. The recovered environmental DNA and RNA from samples provide the information on microbial community and composition, and the active members and biochemical processes of the microbial attributes. It should be emphasized that the metabolically-active members of functional microflora in the biofilm or microbiome on cultural heritage must be determined and identified from the RNA-based analysis to gain a substantially important insight of the active biodeterioration processes and also the effectiveness of the conservation strategies. The importance of the culture-independent technique, based on NGS, is that it can be used in combination with the conventional culturing methods to guide the isolation and enrichment of new microorganisms to gain further biochemical insights to advance the role of the specific microbial groups for biodeterioration of cultural heritage. At the same time, effective restoration and maintenance strategies can be formulated for the protection of world cultural heritage.
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Bonello G, Grillo M, Cecchetto M, Giallain M, Granata A, Guglielmo L, Pane L, Schiaparelli S. Distributional records of Ross Sea (Antarctica) planktic Copepoda from bibliographic data and samples curated at the Italian National Antarctic Museum (MNA): checklist of species collected in the Ross Sea sector from 1987 to 1995. Zookeys 2020; 969:1-22. [PMID: 33013165 PMCID: PMC7515964 DOI: 10.3897/zookeys.969.52334] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Accepted: 07/09/2020] [Indexed: 11/16/2022] Open
Abstract
Distributional data on planktic copepods (Crustacea, Copepoda) collected in the framework of the IIIrd, Vth, and Xth Expeditions of the Italian National Antarctic Program (PNRA) to the Ross Sea sector from 1987 to 1995 are here provided. Sampling was performed with BIONESS and WP2 nets at 94 sampling stations at depths of 0–1,000 m, with a special focus on the Terra Nova Bay area. Altogether, this dataset comprises 6,027 distributional records, out of which 5,306 were obtained by digitizing original data reports and 721 are based on physical museum vouchers curated by the Italian National Antarctic Museum (MNA, Section of Genoa). The MNA samples include 8,224 individual specimens that were identified to the lowest possible taxonomic level. They belong to four orders, 25 families, 52 genera, and 82 morphological units (out of which 17 could be determined at the genus level only). A variety of environmental data were also recorded at each of the sampling stations, and we report original abundances (ind/m3) to enable future species distribution modelling. From a biogeographic point of view, the distributional data here reported represented new records for the Global Biogeographic Information Facility (GBIF) registry. In particular, 62% of the total number of species are new records for the Ross Sea sector and another 28% new records for the Antarctic region.
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Affiliation(s)
- Guido Bonello
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy
| | - Marco Grillo
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy
| | - Matteo Cecchetto
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy.,Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, Italy
| | - Marina Giallain
- Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, Italy
| | - Antonia Granata
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences (ChiBioFarAm), University of Messina, Messina, Italy
| | | | - Luigi Pane
- Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, Italy
| | - Stefano Schiaparelli
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy.,Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, Italy
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12
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Coleine C, Gevi F, Fanelli G, Onofri S, Timperio AM, Selbmann L. Specific adaptations are selected in opposite sun exposed Antarctic cryptoendolithic communities as revealed by untargeted metabolomics. PLoS One 2020; 15:e0233805. [PMID: 32460306 PMCID: PMC7253227 DOI: 10.1371/journal.pone.0233805] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Accepted: 05/12/2020] [Indexed: 12/18/2022] Open
Abstract
Antarctic cryptoendolithic communities are self-supporting borderline ecosystems spreading across the extreme conditions of the Antarctic desert and represent the predominant life-form in the ice-free areas of McMurdo Dry Valleys, accounted as the closest terrestrial Martian analogue. Components of these communities are highly adapted extremophiles and extreme-tolerant microorganisms, among the most resistant known to date. Recently, studies investigated biodiversity and community composition in these ecosystems but the metabolic activity of the metacommunity has never been investigated. Using an untargeted metabolomics, we explored stress-response of communities spreading in two sites of the same location, subjected to increasing environmental pressure due to opposite sun exposure, accounted as main factor influencing the diversity and composition of these ecosystems. Overall, 331 altered metabolites (206 and 125 unique for north and south, respectively), distinguished the two differently exposed communities. We also selected 10 metabolites and performed two-stage Receiver Operating Characteristic (ROC) analysis to test them as potential biomarkers. We further focused on melanin and allantoin as protective substances; their concentration was highly different in the community in the shadow or in the sun. These results clearly indicate that opposite insolation selected organisms in the communities with different adaptation strategies in terms of key metabolites produced.
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Affiliation(s)
- Claudia Coleine
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Federica Gevi
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
- Department of Science and Technology for Agriculture, Forestry, Nature and Energy, University of Tuscia, Viterbo, Italy
| | - Giuseppina Fanelli
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
- Department of Science and Technology for Agriculture, Forestry, Nature and Energy, University of Tuscia, Viterbo, Italy
| | - Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Anna Maria Timperio
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
- Department of Science and Technology for Agriculture, Forestry, Nature and Energy, University of Tuscia, Viterbo, Italy
- * E-mail: (AMT); (LS)
| | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
- Italian National Antarctic Museum (MNA), Mycological Section, Genoa, Italy
- * E-mail: (AMT); (LS)
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13
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Coleine C, Pombubpa N, Zucconi L, Onofri S, Stajich JE, Selbmann L. Endolithic Fungal Species Markers for Harshest Conditions in the McMurdo Dry Valleys, Antarctica. Life (Basel) 2020; 10:E13. [PMID: 32041249 PMCID: PMC7175349 DOI: 10.3390/life10020013] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 01/24/2020] [Accepted: 02/04/2020] [Indexed: 02/03/2023] Open
Abstract
The microbial communities that inhabit lithic niches inside sandstone in the Antarctic McMurdo Dry Valleys of life's limits on Earth. The cryptoendolithic communities survive in these ice-free areas that have the lowest temperatures on Earth coupled with strong thermal fluctuations, extreme aridity, oligotrophy and high levels of solar and UV radiation. In this study, based on DNA metabarcoding, targeting the fungal Internal Transcribed Spacer region 1 (ITS1) and multivariate statistical analyses, we supply the first comprehensive overview onto the fungal diversity and composition of these communities sampled over a broad geographic area of the Antarctic hyper-arid cold desert. Six locations with surfaces that experience variable sun exposure were sampled to compare communities from a common area across a gradient of environmental pressure. The Operational Taxonomic Units (OTUs) identified were primarily members of the Ascomycota phylum, comprised mostly of the Lecanoromycetes and Dothideomycetes classes. The fungal species Friedmanniomyces endolithicus, endemic to Antarctica, was found to be a marker species to the harshest conditions occurring in the shady, south exposed rock surfaces. Analysis of community composition showed that sun exposure was an environmental property that explained community diversity and structured endolithic colonization.
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Affiliation(s)
- Claudia Coleine
- Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy; (C.C.); (L.Z.); (S.O.)
| | - Nuttapon Pombubpa
- Department of Microbiology and Plant Pathology and Institute of Integrative Genome Biology, University of California, Riverside, CA 92521, USA;
| | - Laura Zucconi
- Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy; (C.C.); (L.Z.); (S.O.)
| | - Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy; (C.C.); (L.Z.); (S.O.)
| | - Jason E. Stajich
- Department of Microbiology and Plant Pathology and Institute of Integrative Genome Biology, University of California, Riverside, CA 92521, USA;
| | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy; (C.C.); (L.Z.); (S.O.)
- Italian National Antarctic Museum (MNA), Mycological Section, 16166 Genoa, Italy
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14
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Coleine C, Masonjones S, Sterflinger K, Onofri S, Selbmann L, Stajich JE. Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus. Fungal Biol 2020; 124:458-467. [PMID: 32389308 DOI: 10.1016/j.funbio.2020.01.005] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 01/15/2020] [Accepted: 01/19/2020] [Indexed: 11/28/2022]
Abstract
Friedmanniomyces endolithicus is a highly melanized fungus endemic to the Antarctic, occurring exclusively in endolithic communities of the ice-free areas of the Victoria Land, including the McMurdo Dry Valleys, the coldest and most hyper-arid desert on Earth and accounted as the Martian analog on our planet. F. endolithicus is highly successful in these inhospitable environments, the most widespread and commonly isolated species from these peculiar niches, indicating a high degree of adaptation. The nature of its extremo tolerance has not been previously studied. To investigate this, we sequenced genome of F. endolithicus CCFEE 5311 to explore gene content and genomic patterns that could be attributed to its specialization. The predicted functional potential of the genes was assigned by similarity to InterPro and CAZy domains. The genome was compared to phylogenetically close relatives which are also melanized fungi occurring in extreme environments including Friedmanniomyces simplex, Baudoinia panamericana, Acidomyces acidophilus, Hortaea thailandica and Hortaea werneckii. We tested if shared genomic traits existed among these species and hyper-extremotolerant fungus F. endolithicus. We found that some characters for stress tolerance such as meristematic growth and cold tolerance are enriched in F. endolithicus that may be triggered by the exposure to Antarctic prohibitive conditions.
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Affiliation(s)
- Claudia Coleine
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy.
| | - Sawyer Masonjones
- Department of Microbiology and Plant Pathology, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA.
| | - Katja Sterflinger
- Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria.
| | - Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy.
| | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy; Italian Antarctic National Museum (MNA), Mycological Section, Genoa, Italy.
| | - Jason E Stajich
- Department of Microbiology and Plant Pathology, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA.
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15
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16
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Davolos D, Pietrangeli B, Persiani AM, Maggi O. Victoriomyces antarcticus gen. nov., sp. nov., a distinct evolutionary lineage of the Cephalothecaceae (Ascomycota) based on sequence-based phylogeny and morphology. Int J Syst Evol Microbiol 2019; 69:1099-1110. [PMID: 30767849 DOI: 10.1099/ijsem.0.003275] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
In this study, we propose a new genus, Victoriomyces, with a new species, Victoriomyces antarcticus, isolated from soil samples collected in Victoria Land, Antarctica. To determine its taxonomic status and evolutionary relationships, phylogenetic analysis was performed on DNA sequences from the nuclear 18S rRNA, 28S rRNA and the second largest subunit of RNA polymerase II (RPB2) genes. Victoriomyces antarcticus constitutes one well-supported distinct lineage within the Cephalothecaceae (family incertae sedis in Sordariomycetes), in which the only recognised asexual morphs belong to the genus Phialemonium and to Acremonium thermophilum. Victoriomyces antarcticus can be clearly distinguished from these taxa by means of DNA sequence analysis and its morphological traits that consist in having a Metarhizium-like asexual morph, dark red-coloured disk-like structures, immature bodies and the production of an intense red pigment in the growth media. Finally, we inferred the divergence time of V. antarcticus and the Cephalothecaceae using Bayesian analysis and secondary calibration. The holotype of V. antarcticus is FBL 165. The ex-type strain has been deposited as MUT 3686T and CCF 6158T. An additional strain of the species is FBL 577. The MycoBank number is MB 823713 for the genus and MB 823714 for the species.
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Affiliation(s)
- Domenico Davolos
- Department of Technological Innovations and Safety of Plants, Products and Anthropic Settlements, INAIL, Research Area, Via R. Ferruzzi 38/40 - 00143 Rome, Italy
| | - Biancamaria Pietrangeli
- Department of Technological Innovations and Safety of Plants, Products and Anthropic Settlements, INAIL, Research Area, Via R. Ferruzzi 38/40 - 00143 Rome, Italy
| | - Anna Maria Persiani
- Department of Environmental Biology, Sapienza University of Rome, Piazzale A. Moro, 5 -00185 Rome, Italy
| | - Oriana Maggi
- Department of Environmental Biology, Sapienza University of Rome, Piazzale A. Moro, 5 -00185 Rome, Italy
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17
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Cecchetto M, Lombardi C, Canese S, Cocito S, Kuklinski P, Mazzoli C, Schiaparelli S. The Bryozoa collection of the Italian National Antarctic Museum, with an updated checklist from Terra Nova Bay, Ross Sea. Zookeys 2019; 812:1-22. [PMID: 30647522 PMCID: PMC6330655 DOI: 10.3897/zookeys.812.26964] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 10/08/2018] [Indexed: 11/20/2022] Open
Abstract
This study provides taxonomic and distributional data of bryozoan species from the Ross Sea area, mainly around Terra Nova Bay, based on specimens curated at the Italian National Antarctic Museum (MNA, Section of Genoa). Bryozoan specimens were collected at 75 different sampling stations in the Ross Sea and in the Magellan Strait, in a bathymetric range of 18-711 meters, during 13 expeditions of the Italian National Antarctic Research Program (PNRA) conducted between 1988 and 2014. A total of 282 MNA vouchers corresponding to 311 specimens and 127 morphospecies have been identified and included in the present dataset. 62% of the species were already reported for the Terra Nova Bay area, where most of the Italian samples come from, with a 35% of samples representing new records classified at the specific level, and 3% classified at the genus level. These new additions increase to 124 the total number of species known to occur in Terra Nova Bay. Four 3D-models of Antarctic bryozoans from the Ross Sea are also presented and will be released for research and educational purposes on the Museum website.
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Affiliation(s)
- Matteo Cecchetto
- Italian National Antarctic Museum (MNA), Section of Genoa, Genoa, ItalyItalian National Antarctic MuseumGenoaItaly
- Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, ItalyDepartment of Earth, Environmental and Life ScienceGenoaItaly
| | - Chiara Lombardi
- Marine Environment Research Center ENEA, 19032 Pozzuolo di Lerici (La Spezia), La Spezia, ItalyMarine Environment Research Center ENEALa SpeziaItaly
| | - Simonepietro Canese
- Italian Institute for Environmental Protection and Research, ISPRA BIO-HBT Department, Rome, ItalyItalian Institute for Environmental Protection and ResearchRomeItaly
| | - Silvia Cocito
- Marine Environment Research Center ENEA, 19032 Pozzuolo di Lerici (La Spezia), La Spezia, ItalyMarine Environment Research Center ENEALa SpeziaItaly
| | - Piotr Kuklinski
- Institute of Oceanology, Polish Academy of Sciences, Ul. Powstancow Warszawy 55, Sopot 81-712, PolandInstitute of Oceanology, Polish Academy of SciencesSopotPoland
| | - Claudio Mazzoli
- Department of Geosciences, University of Padua, Padua, ItalyUniversity of PaduaPaduaItaly
| | - Stefano Schiaparelli
- Italian National Antarctic Museum (MNA), Section of Genoa, Genoa, ItalyItalian National Antarctic MuseumGenoaItaly
- Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, ItalyDepartment of Earth, Environmental and Life ScienceGenoaItaly
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18
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Pacelli C, Bryan RA, Onofri S, Selbmann L, Zucconi L, Shuryak I, Dadachova E. Survival and redox activity of Friedmanniomyces endolithicus, an Antarctic endemic black meristematic fungus, after gamma rays exposure. Fungal Biol 2018; 122:1222-1227. [PMID: 30449360 DOI: 10.1016/j.funbio.2018.10.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Revised: 10/08/2018] [Accepted: 10/12/2018] [Indexed: 11/29/2022]
Abstract
Despite living organisms are not exposed to acute ionizing radiation under natural conditions, some exhibit a high radiation resistance. Understanding this phenomenon is important for assessing the impact of radiation-related accidents, occupational exposures and space missions. In this context, in this study we analyzed the effect of gamma rays on the Antarctic cryptoendolithic melanized fungus Friedmanniomyces endolithicus CCFEE 5208 and demonstrated its resistance to acute doses of gamma radiation (up to 400 Gy), accompanied by increase in metabolic activity.
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Affiliation(s)
- Claudia Pacelli
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy; Albert Einstein College of Medicine, Bronx, New York, USA
| | - Ruth A Bryan
- Albert Einstein College of Medicine, Bronx, New York, USA
| | - Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy.
| | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy; Italian National Antarctic Museum (MNA), Mycological Section, Genoa, Italy
| | - Laura Zucconi
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Igor Shuryak
- Center for Radiological Research, Columbia University, New York, USA
| | - Ekaterina Dadachova
- College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, Canada
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19
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Ghiglione C, Alvaro MC, Cecchetto M, Canese S, Downey R, Guzzi A, Mazzoli C, Piazza P, Rapp HT, Sarà A, Schiaparelli S. Porifera collection of the Italian National Antarctic Museum (MNA), with an updated checklist from Terra Nova Bay (Ross Sea). Zookeys 2018:137-156. [PMID: 30150878 PMCID: PMC6109648 DOI: 10.3897/zookeys.758.23485] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Accepted: 04/20/2018] [Indexed: 12/02/2022] Open
Abstract
This new dataset presents occurrence data for Porifera collected in the Ross Sea, mainly in the Terra Nova Bay area, and curated at the Italian National Antarctic Museum (MNA, section of Genoa). Specimens were collected in 331 different sampling stations at depths ranging from 17 to 1,100 meters in the framework of 17 different Italian Antarctic expeditions funded by the Italian National Antarctic Research Program (PNRA). A total of 807 specimens, belonging to 144 morphospecies (i.e., 95 taxa identified at species level and 49 classified at least at the genus level) is included in the dataset. Nearly half (45%) of the species reported here correspond to species already known for Terra Nova Bay. Out of the remaining 55% previously unknown records, under a third (~29%) were classified at the species level, while over a quarter (~26%) were ascribed to the genus level only and these would require further study. All vouchers are permanently curated at the MNA and are available for study to the scientific community. A 3D model of an uncommon species from the Ross Sea, i.e. Tethyopsisbrondstedi (Burton, 1929), is also presented and will be made available for outreach purposes.
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Affiliation(s)
- Claudio Ghiglione
- Italian National Antarctic Museum (MNA), Section of Genoa, Italy Italian National Antarctic Museum Genoa Italy
| | - Maria Chiara Alvaro
- Italian National Antarctic Museum (MNA), Section of Genoa, Italy Italian National Antarctic Museum Genoa Italy.,Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Italy University of Genoa Genoa Italy
| | - Matteo Cecchetto
- Italian National Antarctic Museum (MNA), Section of Genoa, Italy Italian National Antarctic Museum Genoa Italy.,Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Italy University of Genoa Genoa Italy
| | - Simonepietro Canese
- Institute for Environmental Protection and Research, ISPRA, Milazzo, Italy Institute for Environmental Protection and Research Milazzo Italy
| | - Rachel Downey
- Australia National University, Fenner School of Environment and Society, Canberra, Australia Australia National University Canberra Australia
| | - Alice Guzzi
- Italian National Antarctic Museum (MNA), Section of Genoa, Italy Italian National Antarctic Museum Genoa Italy.,Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Italy University of Genoa Genoa Italy
| | - Claudio Mazzoli
- Department of Geosciences, University of Padova, Italy University of Padova Padova Italy
| | - Paola Piazza
- Italian National Antarctic Museum (MNA), Section of Genoa, Italy Italian National Antarctic Museum Genoa Italy.,Department of Physical, Earth and Environmental Sciences, University of Siena, Italy University of Siena Siena Italy
| | - Hans Tore Rapp
- Department of Biological Sciences and K.G. Jebsen Centre for Deep-Sea Research, University of Bergen, Norway University of Bergen Bergen Norway
| | - Antonio Sarà
- Studio Associato Gaia S.N.C., Via Brigata Liguria, Genoa, Italy Studio Associato Gaia S.N.C. Genoa Italy
| | - Stefano Schiaparelli
- Italian National Antarctic Museum (MNA), Section of Genoa, Italy Italian National Antarctic Museum Genoa Italy.,Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Italy University of Genoa Genoa Italy
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20
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Roof-Inhabiting Cousins of Rock-Inhabiting Fungi: Novel Melanized Microcolonial Fungal Species from Photocatalytically Reactive Subaerial Surfaces. Life (Basel) 2018; 8:life8030030. [PMID: 30011950 PMCID: PMC6161114 DOI: 10.3390/life8030030] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Revised: 07/10/2018] [Accepted: 07/11/2018] [Indexed: 11/28/2022] Open
Abstract
Subaerial biofilms (SAB) are an important factor in weathering, biofouling, and biodeterioration of bare rocks, building materials, and solar panel surfaces. The realm of SAB is continually widened by modern materials, and the settlers on these exposed solid surfaces always include melanized, stress-tolerant microcolonial ascomycetes. After their first discovery on desert rock surfaces, these melanized chaetothyrialean and dothidealean ascomycetes have been found on Mediterranean monuments after biocidal treatments, Antarctic rocks and solar panels. New man-made modifications of surfaces (e.g., treatment with biocides or photocatalytically active layers) accommodate the exceptional stress-tolerance of microcolonial fungi and thus further select for this well-protected ecological group. Melanized fungal strains were isolated from a microbial community that developed on highly photocatalytic roof tiles after a long-term environmental exposure in a maritime-influenced region in northwestern Germany. Four of the isolated strains are described here as a novel species, Constantinomyces oldenburgensis, based on multilocus ITS, LSU, RPB2 gene phylogeny. Their closest relative is a still-unnamed rock-inhabiting strain TRN431, here described as C. patonensis. Both species cluster in Capnodiales, among typical melanized microcolonial rock fungi from different stress habitats, including Antarctica. These novel strains flourish in hostile conditions of highly oxidizing material surfaces, and shall be used in reference procedures in material testing.
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Duarte AWF, Dos Santos JA, Vianna MV, Vieira JMF, Mallagutti VH, Inforsato FJ, Wentzel LCP, Lario LD, Rodrigues A, Pagnocca FC, Pessoa Junior A, Durães Sette L. Cold-adapted enzymes produced by fungi from terrestrial and marine Antarctic environments. Crit Rev Biotechnol 2017; 38:600-619. [PMID: 29228814 DOI: 10.1080/07388551.2017.1379468] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Antarctica is the coldest, windiest, and driest continent on Earth. In this sense, microorganisms that inhabit Antarctica environments have to be adapted to harsh conditions. Fungal strains affiliated with Ascomycota and Basidiomycota phyla have been recovered from terrestrial and marine Antarctic samples. They have been used for the bioprospecting of molecules, such as enzymes. Many reports have shown that these microorganisms produce cold-adapted enzymes at low or mild temperatures, including hydrolases (e.g. α-amylase, cellulase, chitinase, glucosidase, invertase, lipase, pectinase, phytase, protease, subtilase, tannase, and xylanase) and oxidoreductases (laccase and superoxide dismutase). Most of these enzymes are extracellular and their production in the laboratory has been carried out mainly under submerged culture conditions. Several studies showed that the cold-adapted enzymes exhibit a wide range in optimal pH (1.0-9.0) and temperature (10.0-70.0 °C). A myriad of methods have been applied for cold-adapted enzyme purification, resulting in purification factors and yields ranging from 1.70 to 1568.00-fold and 0.60 to 86.20%, respectively. Additionally, some fungal cold-adapted enzymes have been cloned and expressed in host organisms. Considering the enzyme-producing ability of microorganisms and the properties of cold-adapted enzymes, fungi recovered from Antarctic environments could be a prolific genetic resource for biotechnological processes (industrial and environmental) carried out at low or mild temperatures.
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Affiliation(s)
- Alysson Wagner Fernandes Duarte
- a Universidade Federal de Alagoas, Campus Arapiraca , Arapiraca , Brazil.,b Divisão de Recursos Microbianos , Centro Pluridisciplinar de Pesquisas Químicas, Biológicas e Agrícolas, Universidade Estadual de Campinas , Paulínia , Brazil
| | - Juliana Aparecida Dos Santos
- c Departamento de Bioquímica e Microbiologia , Universidade Estadual Paulistra (UNESP), Câmpus de Rio Claro , Rio Claro , Brazil
| | - Marina Vitti Vianna
- c Departamento de Bioquímica e Microbiologia , Universidade Estadual Paulistra (UNESP), Câmpus de Rio Claro , Rio Claro , Brazil
| | - Juliana Maíra Freitas Vieira
- c Departamento de Bioquímica e Microbiologia , Universidade Estadual Paulistra (UNESP), Câmpus de Rio Claro , Rio Claro , Brazil
| | - Vitor Hugo Mallagutti
- c Departamento de Bioquímica e Microbiologia , Universidade Estadual Paulistra (UNESP), Câmpus de Rio Claro , Rio Claro , Brazil
| | - Fabio José Inforsato
- c Departamento de Bioquímica e Microbiologia , Universidade Estadual Paulistra (UNESP), Câmpus de Rio Claro , Rio Claro , Brazil
| | - Lia Costa Pinto Wentzel
- c Departamento de Bioquímica e Microbiologia , Universidade Estadual Paulistra (UNESP), Câmpus de Rio Claro , Rio Claro , Brazil
| | - Luciana Daniela Lario
- d Centro de Estudios Fotosintéticos y Bioquímicos, Universidad Nacional de Rosario , Rosario , Argentina.,e Departamento de Tecnologia Bioquímico-Farmacêutica , Faculdade de Ciências Farmacêuticas, Universidade de São Paulo , São Paulo , Brazil
| | - Andre Rodrigues
- c Departamento de Bioquímica e Microbiologia , Universidade Estadual Paulistra (UNESP), Câmpus de Rio Claro , Rio Claro , Brazil
| | - Fernando Carlos Pagnocca
- c Departamento de Bioquímica e Microbiologia , Universidade Estadual Paulistra (UNESP), Câmpus de Rio Claro , Rio Claro , Brazil
| | - Adalberto Pessoa Junior
- e Departamento de Tecnologia Bioquímico-Farmacêutica , Faculdade de Ciências Farmacêuticas, Universidade de São Paulo , São Paulo , Brazil
| | - Lara Durães Sette
- c Departamento de Bioquímica e Microbiologia , Universidade Estadual Paulistra (UNESP), Câmpus de Rio Claro , Rio Claro , Brazil
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22
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Cecchetto M, Alvaro MC, Ghiglione C, Guzzi A, Mazzoli C, Piazza P, Schiaparelli S. Distributional records of Antarctic and sub-Antarctic Ophiuroidea from samples curated at the Italian National Antarctic Museum (MNA): check-list update of the group in the Terra Nova Bay area (Ross Sea) and launch of the MNA 3D model 'virtual gallery'. Zookeys 2017; 705:61-79. [PMID: 29118612 PMCID: PMC5674050 DOI: 10.3897/zookeys.705.13712] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Accepted: 07/14/2017] [Indexed: 11/30/2022] Open
Abstract
The distributional records of Ophiuroidea stored at the Italian National Antarctic Museum (MNA, Section of Genoa) are presented, corresponding to 1595 individuals that belong to 35 species and 17 genera. Specimens were collected in 106 different sampling stations at depths ranging from 21 to 1652 m in the framework of 14 Antarctic expeditions to the Ross Sea, one to the Antarctic Peninsula, and one to the Falkland Islands (Islas Malvinas). Three species, Amphiura joubini Koehler, 1912, Amphiura (Amphiura) angularis Lyman, 1879, and Ophiura flexibilis (Koehler, 1911), are reported as new records for the Terra Nova Bay area, whose check-list of species increases from 15 to 18 species. The determination of these three new records was based both on morphological identification and molecular analyses (COI barcoding). Some of the genetically characterised specimens were also documented through photogrammetry and micro-computed tomography and represent the first bulk of 3D models that will be available through the MNA and Sketchfab websites, both for research and educational purposes.
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Affiliation(s)
- Matteo Cecchetto
- Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, Italy
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy
| | - Maria Chiara Alvaro
- Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, Italy
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy
| | - Claudio Ghiglione
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy
| | - Alice Guzzi
- Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, Italy
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy
| | - Claudio Mazzoli
- Department of Geosciences, University of Padua, Padua, Italy
| | - Paola Piazza
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy
- Department of Physical, Earth and Environmental Sciences, University of Siena, Siena, Italy
| | - Stefano Schiaparelli
- Department of Earth, Environmental and Life Science (DISTAV), University of Genoa, Genoa, Italy
- Italian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy
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