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Song J, Liang JF, Mehrabi-Koushki M, Krisai-Greilhuber I, Ali B, Bhatt VK, Cerna-Mendoza A, Chen B, Chen ZX, Chu HL, Corazon-Guivin MA, da Silva GA, De Kesel A, Dima B, Dovana F, Farokhinejad R, Ferisin G, Guerrero-Abad JC, Guo T, Han LH, Ilyas S, Justo A, Khalid AN, Khodadadi-Pourarpanahi S, Li TH, Liu C, Lorenzini M, Lu JK, Mumtaz AS, Oehl F, Pan XY, Papp V, Qian W, Razaq A, Semwal KC, Tang LZ, Tian XL, Vallejos-Tapullima A, van der Merwe NA, Wang SK, Wang CQ, Yang RH, Yu F, Zapparoli G, Zhang M, Antonín V, Aptroot A, Aslan A, Banerjee A, Chatterjee S, Dirks AC, Ebrahimi L, Fotouhifar KB, Ghosta Y, Kalinina LB, Karahan D, Liu J, Maiti MK, Mookherjee A, Nath PS, Panja B, Saha J, Ševčíková H, Voglmayr H, Yazıcı K, Haelewaters D. Fungal Systematics and Evolution: FUSE 5. SYDOWIA 2019; 71:141-245. [PMID: 31975743 PMCID: PMC6978154 DOI: 10.12905/0380.sydowia71-2019-0141] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Thirteen new species are formally described: Cortinarius brunneocarpus from Pakistan, C. lilacinoarmillatus from India, Curvularia khuzestanica on Atriplex lentiformis from Iran, Gloeocantharellus neoechinosporus from China, Laboulbenia bernaliana on species of Apenes, Apristus, and Philophuga (Coleoptera, Carabidae) from Nicaragua and Panama, L. oioveliicola on Oiovelia machadoi (Hemiptera, Veliidae) from Brazil, L. termiticola on Macrotermes subhyalinus (Blattodea, Termitidae) from the DR Congo, Pluteus cutefractus from Slovenia, Rhizoglomus variabile from Peru, Russula phloginea from China, Stagonosporopsis flacciduvarum on Vitis vinifera from Italy, Strobilomyces huangshanensis from China, Uromyces klotzschianus on Rumex dentatus subsp. klotzschianus from Pakistan. The following new records are reported: Alternaria calendulae on Calendula officinalis from India; A. tenuissima on apple and quince fruits from Iran; Candelariella oleaginescens from Turkey; Didymella americana and D. calidophila on Vitis vinifera from Italy; Lasiodiplodia theobromae causing tip blight of Dianella tasmanica 'variegata' from India; Marasmiellus subpruinosus from Madeira, Portugal, new for Macaronesia and Africa; Mycena albidolilacea, M. tenuispinosa, and M. xantholeuca from Russia; Neonectria neomacrospora on Madhuca longifolia from India; Nothophoma quercina on Vitis vinifera from Italy; Plagiosphaera immersa on Urtica dioica from Austria; Rinodina sicula from Turkey; Sphaerosporium lignatile from Wisconsin, USA; and Verrucaria murina from Turkey. Multi-locus analysis of ITS, LSU, rpb1, tef1 sequences revealed that P. immersa, commonly classified within Gnomoniaceae (Diaporthales) or as Sordariomycetes incertae sedis, belongs to Magnaporthaceae (Magnaporthales). Analysis of a six-locus Ascomycota-wide dataset including SSU and LSU sequences of S. lignatile revealed that this species, currently in Ascomycota incertae sedis, belongs to Pyronemataceae (Pezizomycetes, Pezizales).
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Affiliation(s)
- Jie Song
- Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, P.R. China
| | - Jun-Feng Liang
- Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, P.R. China
| | - Mehdi Mehrabi-Koushki
- Department of Plant Protection, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Iran
- Biotechnology and Bioscience Research Center, Shahid Chamran University of Ahvaz, Ahvaz, Iran
| | | | - Barkat Ali
- Department of Plant Sciences, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan
- Department of Biochemistry, Genetics and Microbiology, Division of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria 0028, South Africa
| | | | - Agustín Cerna-Mendoza
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca 315, Morales, Peru
| | - Bin Chen
- Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, P.R. China
| | - Zai-Xiong Chen
- Management Bureau of Danxiashan National Nature Reserve of Guangdong, Shaoguan 512300, China
| | - Hong-Long Chu
- College of Biological Resource and Food Engineering, Center for Yunnan Plateau Biological Resources Protection and Utilization, Qujing Normal University, Qujing, Yunnan 655011, China
| | - Mike Anderson Corazon-Guivin
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca 315, Morales, Peru
| | - Gladstone Alves da Silva
- Departamento de Micologia, CB, Universidade Federal de Pernambuco, Av. da engenharia s/n, Cidade Universitária, 50740-600, Recife, PE, Brazil
| | - André De Kesel
- Meise Botanic Garden, Nieuwelaan 38, 1860 Meise, Belgium
| | - Bálint Dima
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, H-1117 Budapest, Hungary
| | - Francesco Dovana
- Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, I-10125 Torino, Italy
| | - Reza Farokhinejad
- Department of Plant Protection, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Iran
| | | | - Juan Carlos Guerrero-Abad
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca 315, Morales, Peru
- Instituto Nacional de Innovación Agraria (INIA). Dirección General de Recursos Genéticos y Biotecnología. Av. La Molina 1981, La Molina - Lima, Peru
| | - Ting Guo
- Key Laboratory of Edible Fungal Resources and Utilization (South), National Engineering Research Center of Edible Fungi, Key Laboratory of Agricultural Genetics and Breeding of Shanghai, Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201106, China
| | - Li-Hong Han
- College of Biological Resource and Food Engineering, Center for Yunnan Plateau Biological Resources Protection and Utilization, Qujing Normal University, Qujing, Yunnan 655011, China
| | - Sobia Ilyas
- Department of Botany, Lahore College for Women University, Lahore, Pakistan
| | - Alfredo Justo
- New Brunswick Museum, 277 Douglas Ave., Saint John, New Brunswick, E2K 1E5, Canada
| | | | | | - Tai-Hui Li
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application & Guangdong Open Laboratory of Applied Microbiology, Guangdong Institute of Microbiology, Guangzhou 510070, China
| | - Chao Liu
- College of Biological Resource and Food Engineering, Center for Yunnan Plateau Biological Resources Protection and Utilization, Qujing Normal University, Qujing, Yunnan 655011, China
| | | | - Jun-Kun Lu
- Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, P.R. China
| | - Abdul Samad Mumtaz
- Department of Plant Sciences, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan
| | - Fritz Oehl
- Agroscope, Competence Division for Plants and Plant Products, Ecotoxicology, Müller-Thurgau-Strasse 29, CH-8820 Wädenswil, Switzerland
| | - Xue-Yu Pan
- Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, P.R. China
| | - Viktor Papp
- Department of Botany, Szent István University, H-1518 Budapest, Hungary
| | - Wu Qian
- Bureau of Parks and Woods of Mt. Huangshan Administrative Committee, Huangshan, Anhui 245000, China
| | - Abdul Razaq
- Discipline of Botany, Faculty of Fisheries and Wildlife, University of Veterinary and Animal Sciences (UVAS), Ravi Campus, Pattoki, Pakistan
| | - Kamal C. Semwal
- Department of Biology, College of Sciences, Eritrea Institute of Technology, Mai Nafhi, Asmara, Eritrea
| | - Li-Zhou Tang
- College of Biological Resource and Food Engineering, Center for Yunnan Plateau Biological Resources Protection and Utilization, Qujing Normal University, Qujing, Yunnan 655011, China
| | - Xue-Lian Tian
- College of Biological Resource and Food Engineering, Center for Yunnan Plateau Biological Resources Protection and Utilization, Qujing Normal University, Qujing, Yunnan 655011, China
| | - Adela Vallejos-Tapullima
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca 315, Morales, Peru
| | - Nicolaas A. van der Merwe
- Department of Biochemistry, Genetics and Microbiology, Division of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria 0028, South Africa
| | - Sheng-Kun Wang
- Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, P.R. China
| | - Chao-Qun Wang
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application & Guangdong Open Laboratory of Applied Microbiology, Guangdong Institute of Microbiology, Guangzhou 510070, China
| | - Rui-Heng Yang
- Key Laboratory of Edible Fungal Resources and Utilization (South), National Engineering Research Center of Edible Fungi, Key Laboratory of Agricultural Genetics and Breeding of Shanghai, Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201106, China
| | - Fei Yu
- Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, P.R. China
| | - Giacomo Zapparoli
- Università degli Studi di Verona, Dipartimento di Biotecnologie, Italy
| | - Ming Zhang
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application & Guangdong Open Laboratory of Applied Microbiology, Guangdong Institute of Microbiology, Guangzhou 510070, China
| | - Vladimir Antonín
- Department of Botany, Moravian Museum, Zelný trh 6, CZ-659 37 Brno, Czech Republic
| | - André Aptroot
- ABL Herbarium G.v.d.Veenstraat, 107 NL-3762, XK Soest, The Netherlands
| | - Ali Aslan
- Yüzüncü Yıl University, Faculty of Pharmacy, 65080 Campus, Van, Turkey; Kyrgyz-Turkish Manas University, Faculty of Arts and Science, Dept. of Biology, Bishkek, Kyrgyzstan
| | - Arghya Banerjee
- Department of Plant Pathology, Bidhan Chandra Krishi Viswavidyalaya, Nadia-741252, West Bengal, India
| | - Subrata Chatterjee
- Department of Agricultural Entomology, Bidhan Chandra Krishi Viswavidyalaya, Nadia-741252, West Bengal, India
| | - Alden C. Dirks
- Department of Ecology and Evolutionary Biology, University of Michigan, 1105 North University Avenue, 4050 Biological Sciences Building, Ann Arbor, MI 48109, USA
| | - Leila Ebrahimi
- Department of Entomology and Plant Pathology, Aburaihan Campus, University of Tehran, Tehran, 33916-53755, Iran
| | - Khalil-Berdi Fotouhifar
- Department of Plant Protection, Faculty of Agricultural Sciences and Engineering, College of Agriculture and Natural Resources, University of Tehran, Karaj, 31587-77871, Iran
| | - Youbert Ghosta
- Department of Plant Protection, Faculty of Agriculture, Urmia University, Urmia, P. O. Box 165, Iran
| | - Lyudmila B. Kalinina
- Russian Academy of Sciences, Komarov Botanical Institute, Prof. Popov Str. 2, St. Petersburg RU-197376, Russia
| | - Dilara Karahan
- Department of Biology, Faculty of Science, Karadeniz Technical University, 61080, Trabzon, Turkey
| | - Jingyu Liu
- Department of Botany and Plant Pathology, Purdue University, 915 W. State Street, West Lafayette, IN 47907, USA
| | - Mrinal Kumar Maiti
- Department of Biotechnology, Indian Institute of Technology Kharagpur, 721302, West Bengal, India
| | - Abhirup Mookherjee
- Department of Biotechnology, Indian Institute of Technology Kharagpur, 721302, West Bengal, India
| | - Partha Sarathi Nath
- Department of Plant Pathology, Bidhan Chandra Krishi Viswavidyalaya, Nadia-741252, West Bengal, India
| | - Birendranath Panja
- Department of Plant Pathology, Bidhan Chandra Krishi Viswavidyalaya, Nadia-741252, West Bengal, India
| | - Jayanta Saha
- Department of Plant Pathology, Bidhan Chandra Krishi Viswavidyalaya, Nadia-741252, West Bengal, India
| | - Hana Ševčíková
- Department of Botany, Moravian Museum, Zelný trh 6, CZ-659 37 Brno, Czech Republic
| | - Hermann Voglmayr
- Department of Botany and Biodiversity Research, Universität Wien, Rennweg 14, 1030 Wien, Austria
- Institute of Forest Entomology, Forest Pathology and Forest Protection, BOKU-University of Natural Resources and Life Sciences, Peter-Jordan-Straße 82/I, 1190 Wien, Austria
| | - Kenan Yazıcı
- Department of Biology, Faculty of Science, Karadeniz Technical University, 61080, Trabzon, Turkey
| | - Danny Haelewaters
- Department of Botany and Plant Pathology, Purdue University, 915 W. State Street, West Lafayette, IN 47907, USA
- Harvard University Herbaria, 22 Divinity Avenue, Cambridge, MA 02138, USA
- Herbario UCH, Universidad Autónoma de Chiriquí, Apartado Postal 0427, David, Panama
- Smithsonian Tropical Research Institute, Apartado Postal 0843-03092, Balboa, Panama
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Yin M, Wingfield MJ, Zhou X, Linnakoski R, de Beer ZW. Taxonomy and phylogeny of the Leptographium olivaceum complex (Ophiostomatales, Ascomycota), including descriptions of six new species from China and Europe. MycoKeys 2019; 60:93-123. [PMID: 31824211 PMCID: PMC6898192 DOI: 10.3897/mycokeys.60.39069] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Accepted: 10/22/2019] [Indexed: 11/26/2022] Open
Abstract
The Leptographiumolivacea complex encompasses species in the broadly defined genus Leptographium (Ophiostomatales, Ascomycota) that are generally characterized by synnematous conidiophores. Most species of the complex are associates of conifer-infesting bark beetles in Europe and North America. The aims of this study were to reconsider the delineation of known species, and to confirm the identity of several additional isolates resembling L.olivacea that have emerged from recent surveys in China, Finland, Poland, Russia, and Spain. Phylogenetic analyses of sequence data for five loci (ACT, TUB, CAL, ITS2-LSU, and TEF-1α) distinguished 14 species within the complex. These included eight known species (L.cucullatum, L.davidsonii, L.erubescens, L.francke-grosmanniae, L.olivaceum, L.olivaceapini, L.sagmatosporum, and L.vescum) and six new species (herein described as L.breviuscapum, L.conplurium, L.pseudoalbum, L.rhizoidum, L.sylvestris, and L.xiningense). New combinations are provided for L.cucullatum, L.davidsonii, L.erubescens, L.olivaceum, L.olivaceapini, L.sagmatosporum and L.vescum. New Typifications: Lectotypes are designated for L.olivaceum, L.erubescens and L.sagmatosporum. Epitypes were designated for L.olivaceapini and L.sagmatosporum. In addition to phylogenetic separation, the synnematous asexual states and ascomata with almost cylindrical necks and prominent ostiolar hyphae, distinguish the L.olivaceum complex from others in Leptographium.
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Affiliation(s)
- Mingliang Yin
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, 510000, China.,Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, Gauteng Province, South Africa
| | - Michael J Wingfield
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, Gauteng Province, South Africa
| | - Xudong Zhou
- FuturaGene Biotechnology (Shanghai) Co. Ltd, Shanghai, 200233, China
| | - Riikka Linnakoski
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, Gauteng Province, South Africa.,Natural Resources Institute Finland (Luke), 00790 Helsinki, Finland
| | - Z Wilhelm de Beer
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, Gauteng Province, South Africa
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