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Opatova V, Hamilton CA, Hedin M, De Oca LM, Král J, Bond JE. Phylogenetic Systematics and Evolution of the Spider Infraorder Mygalomorphae Using Genomic Scale Data. Syst Biol 2021; 69:671-707. [PMID: 31841157 DOI: 10.1093/sysbio/syz064] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2019] [Accepted: 09/10/2019] [Indexed: 12/19/2022] Open
Abstract
The infraorder Mygalomorphae is one of the three main lineages of spiders comprising over 3000 nominal species. This ancient group has a worldwide distribution that includes among its ranks large and charismatic taxa such as tarantulas, trapdoor spiders, and highly venomous funnel-web spiders. Based on past molecular studies using Sanger-sequencing approaches, numerous mygalomorph families (e.g., Hexathelidae, Ctenizidae, Cyrtaucheniidae, Dipluridae, and Nemesiidae) have been identified as non-monophyletic. However, these data were unable to sufficiently resolve the higher-level (intra- and interfamilial) relationships such that the necessary changes in classification could be made with confidence. Here, we present a comprehensive phylogenomic treatment of the spider infraorder Mygalomorphae. We employ 472 loci obtained through anchored hybrid enrichment to reconstruct relationships among all the mygalomorph spider families and estimate the timeframe of their diversification. We sampled nearly all currently recognized families, which has allowed us to assess their status, and as a result, propose a new classification scheme. Our generic-level sampling has also provided an evolutionary framework for revisiting questions regarding silk use in mygalomorph spiders. The first such analysis for the group within a strict phylogenetic framework shows that a sheet web is likely the plesiomorphic condition for mygalomorphs, as well as providing insights to the ancestral foraging behavior for all spiders. Our divergence time estimates, concomitant with detailed biogeographic analysis, suggest that both ancient continental-level vicariance and more recent dispersal events have played an important role in shaping modern day distributional patterns. Based on our results, we relimit the generic composition of the Ctenizidae, Cyrtaucheniidae, Dipluridae, and Nemesiidae. We also elevate five subfamilies to family rank: Anamidae (NEW RANK), Euagridae (NEW RANK), Ischnothelidae (NEW RANK), Pycnothelidae (NEW RANK), and Bemmeridae (NEW RANK). Three families Entypesidae (NEW FAMILY), Microhexuridae (NEW FAMILY), and Stasimopidae (NEW FAMILY), and one subfamily Australothelinae (NEW SUBFAMILY) are newly proposed. Such a major rearrangement in classification, recognizing nine newly established family-level rank taxa, is the largest the group has seen in over three decades. [Biogeography; molecular clocks; phylogenomics; spider web foraging; taxonomy.].
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Affiliation(s)
- Vera Opatova
- Department of Entomology and Nematology, University of California, 1282 Academic Surge, One Shields Avenue, Davis, CA 95616, USA
| | - Chris A Hamilton
- Department of Entomology, Plant Pathology & Nematology, University of Idaho, 875 Perimeter Dr. MS 2329, Moscow ID 83844-2329, USA
| | - Marshal Hedin
- Department of Biology, LSN 204E, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182-4614, USA
| | - Laura Montes De Oca
- Departamento de Ecología y Biología Evolutiva, Instituto de Investigaciones Biológicas Clemente Estable, Av. Italia 3318, Montevideo 11600, Uruguay
| | - Jiři Král
- Department of Genetics and Microbiology, Faculty of Sciences, Charles University, Viničná 5, Prague 2 128 44, Czech Republic
| | - Jason E Bond
- Department of Entomology and Nematology, University of California, 1282 Academic Surge, One Shields Avenue, Davis, CA 95616, USA
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Fukushima C, Mendoza JI, West RC, Longhorn SJ, Rivera E, Cooper EWT, Hénaut Y, Henriques S, Cardoso P. Species conservation profiles of tarantula spiders (Araneae, Theraphosidae) listed on CITES. Biodivers Data J 2019; 7:e39342. [PMID: 31749657 PMCID: PMC6858399 DOI: 10.3897/bdj.7.e39342] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 10/30/2019] [Indexed: 11/12/2022] Open
Abstract
BACKGROUND CITES is an international agreement between governments to ensure that international trade in specimens of wild animals and plants does not threaten their survival. Regarding spiders, all species listed in CITES are tarantulas. They are included in Appendix II, meaning that they are species that are not necessarily now threatened with extinction but that they may become so unless trade is closely controlled.Many tarantulas are legally and illegally traded in the pet market and they are one of the most traded invertebrate groups. Originally, the CITES list published in 1995 included all the current species of the genus Brachypelma Simon, 1891 plus Aphonopelma pallidum (F. O. Pickard-Cambridge, 1897) and the so-called Aphonopelma albiceps (Pocock, 1903). After that, some taxonomic changes were done, as well as descriptions of new species in the genus Brachypelma. The objective of this paper is to assess the 21 taxonomically valid spider species listed on CITES according to the IUCN criteria, study the general patterns and trends and advise on possible future conservation actions critical for the survival of endangered species. NEW INFORMATION Amongst all 21 species assessed, 16 had sufficient data on their distribution, ecology and threats to properly understand their current status and suggest possible conservation measures. A decline in the area of occupancy (AOO) and extent of occurrence (EOO) was inferred to almost all species, caused mostly by human activities (urbanisation, roads, agricultural and touristic activities), which often lead to the complete loss of subpopulations across their range. Hurricanes and frequent rising water, which are increasing in frequency due to climate change, can cause decline in habitat quality and consequent change in EOO and AOO of some species and should also be considered when planning conservation actions. Severe fragmentation was detected in 13 species and is therefore one of the most relevant threats to the most endangered Brachypelma species and should be made a priority aspect to deal with when proposing conservation actions for the group. Regarding the loss of individuals in wild populations, the main cause seems to be the overharvesting to meet the illegal trade.The most important conservation actions identified across species include preserving their natural habitat through protected areas, establishing management plans for both the species and their habitats and undertaking systematic monitoring to provide information about population recovery and species re-introduction programmes. In general, we propose to prioritise and support research on the population trends and distribution, as well as on the impact of land use and habitat degradation. Special attention regarding conservation actions and research plans has to be given to the central Pacific coastal area of Mexico, particularly around Guerrero State where five species of Brachypelma occur. Critically, for some of the most endangered species, such as B. baumgarteni and B. hamorii, there is no official protected area in their range of occurrence. It would therefore be highly recommended to establish at least one conservation unit which focuses on protecting each of these species in situ. In some cases, basic taxonomic research is needed before development of any appropriate conservation action can be proposed.
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Affiliation(s)
- Caroline Fukushima
- Laboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History, University of Helsinki, Helsinki, FinlandLaboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History, University of HelsinkiHelsinkiFinland
| | - Jorge Ivan Mendoza
- Institute of Biology, National Autonomous University of Mexico, Mexico City, MexicoInstitute of Biology, National Autonomous University of MexicoMexico CityMexico
| | - Rick C. West
- Independent Researcher, Sooke, BC, CanadaIndependent ResearcherSooke, BCCanada
- IUCN SSC Spider & Scorpion Specialist Group, Helsinki, FinlandIUCN SSC Spider & Scorpion Specialist GroupHelsinkiFinland
| | - Stuart John Longhorn
- Arachnology Research Association, Oxford, United KingdomArachnology Research AssociationOxfordUnited Kingdom
| | - Emmanuel Rivera
- Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO), Mexico City, MexicoComisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO)Mexico CityMexico
| | - Ernest W. T. Cooper
- IUCN SSC Spider & Scorpion Specialist Group, Helsinki, FinlandIUCN SSC Spider & Scorpion Specialist GroupHelsinkiFinland
- E. Cooper Environmental Consulting, Delta, CanadaE. Cooper Environmental ConsultingDeltaCanada
- Simon Fraser University, Burnaby, CanadaSimon Fraser UniversityBurnabyCanada
| | - Yann Hénaut
- Ecosur - El Colegio de la Frontera Sur, Chetumal, Quintana Roo, MexicoEcosur - El Colegio de la Frontera SurChetumal, Quintana RooMexico
| | - Sergio Henriques
- Laboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History, University of Helsinki, Helsinki, FinlandLaboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History, University of HelsinkiHelsinkiFinland
- IUCN SSC Spider & Scorpion Specialist Group, Helsinki, FinlandIUCN SSC Spider & Scorpion Specialist GroupHelsinkiFinland
- Institute of Zoology, Zoological Society of London, Regent's Park, London NW1 4RY, London, United KingdomInstitute of Zoology, Zoological Society of London, Regent's Park, London NW1 4RYLondonUnited Kingdom
- Centre for Biodiversity & Environment Research, Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT, London, United KingdomCentre for Biodiversity & Environment Research, Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BTLondonUnited Kingdom
| | - Pedro Cardoso
- Laboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History, University of Helsinki, Helsinki, FinlandLaboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History, University of HelsinkiHelsinkiFinland
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Mendoza J, Francke O. Systematic revision of Mexican threatened tarantulas Brachypelma (Araneae: Theraphosidae: Theraphosinae), with a description of a new genus, and implications on the conservation. Zool J Linn Soc 2019. [DOI: 10.1093/zoolinnean/zlz046] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Abstract
The tarantula genus Brachypelma includes colourful species that are highly sought after in the commercial pet trade. They are all included in CITES appendix II. We present phylogenetic analyses using molecular and morphological characters to revise Brachypelma, in which we include all currently known species. Our results agree with a previous study that shows the non-monophyly of Brachypelma. Both phylogenies strongly favour the division of Brachypelma into two smaller genera. The first clade (Brachypelma s.s.) is formed by B.albiceps, B. auratum, B. baumgarteni, B. boehmei, B. emilia, B. hamorii, B. klaasi and B. smithi. The species included in the second clade are transferred to the new genus Tliltocatl and is formed by T. albopilosum comb. nov., T. epicureanum comb. nov., T. kahlenbergi comb. nov., T. sabulosum comb. nov., T. schroederi comb. nov., T. vagans comb. nov. and T. verdezi comb. nov. Both genera can be differentiated by their coloration and the shape of the genitalia. We transfer to Tliltocatl: T. alvarezi, T. andrewi and T. aureoceps, but should be considered as nomina dubia. In addition, we transfer B. fossorium to Stichoplastoris. We discuss the implications of these taxonomical changes for CITES and for the Mexican Laws for wildlife protection.
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Affiliation(s)
- Jorge Mendoza
- Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de MEXICO, Coyoacán, Distrito Federal, MEXICO
- Colección Nacional de Arácnidos, Módulo D planta baja, Departamento de Zoología, Instituto de Biología, Universidad Nacional Autónoma de MEXICO, Ciudad Universitaria, Coyoacán, Distrito Federal
| | - Oscar Francke
- Colección Nacional de Arácnidos, Módulo D planta baja, Departamento de Zoología, Instituto de Biología, Universidad Nacional Autónoma de MEXICO, Ciudad Universitaria, Coyoacán, Distrito Federal
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Ma Y, Li HL, Chen XB, Jin WY, Zhou H, Ma Y, Wang RL. 3D QSAR Pharmacophore Based Virtual Screening for Identification of Potential Inhibitors for CDC25B. Comput Biol Chem 2018; 73:1-12. [PMID: 29413811 DOI: 10.1016/j.compbiolchem.2018.01.005] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2017] [Revised: 01/06/2018] [Accepted: 01/17/2018] [Indexed: 11/19/2022]
Abstract
Owing to its fundamental roles in cell cycle phases, the cell division cycle 25B (CDC25B) was broadly considered as potent clinical drug target for cancers. In this study, 3D QSAR pharmacophore models for CDC25B inhibitors were developed by the module of Hypogen. Three methods (cost analysis, test set prediction, and Fisher's test) were applied to validate that the models could be used to predict the biological activities of compounds. Subsequently, 26 compounds satisfied Lipinski's rule of five were obtained by the virtual screening of the Hypo-1-CDC25B against ZINC databases. It was then discovered that 9 identified molecules had better binding affinity than a known CDC25B inhibitors-compound 1 using docking studies. The molecular dynamics simulations showed that the compound had favorable conformations for binding to the CDC25B. Thus, our findings here would be helpful to discover potent lead compounds for the treatment of cancers.
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Affiliation(s)
- Ying Ma
- Tianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics (Theranostics), School of Pharmacy, Tianjin Medical University, Tianjin, 300070, China
| | - Hong-Lian Li
- Tianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics (Theranostics), School of Pharmacy, Tianjin Medical University, Tianjin, 300070, China
| | - Xiu-Bo Chen
- Tianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics (Theranostics), School of Pharmacy, Tianjin Medical University, Tianjin, 300070, China; Eye Hospital, Tianjin Medical University, School of Optometry and Ophthalmology, Tianjin Medical University, China
| | - Wen-Yan Jin
- Tianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics (Theranostics), School of Pharmacy, Tianjin Medical University, Tianjin, 300070, China
| | - Hui Zhou
- Tianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics (Theranostics), School of Pharmacy, Tianjin Medical University, Tianjin, 300070, China
| | - Ying Ma
- Tianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics (Theranostics), School of Pharmacy, Tianjin Medical University, Tianjin, 300070, China.
| | - Run-Ling Wang
- Tianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics (Theranostics), School of Pharmacy, Tianjin Medical University, Tianjin, 300070, China.
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