The mammalian faunas endemic to the Cerrado and the Caatinga

Triatoma costalimai, a neglected vector of Trypanosoma cruzi in the Cerrado savannas of South America: A comprehensive review

Triatoma costalimai is a little-known triatomine-bug species whose role as a vector of Chagas disease remains poorly understood. To address this gap, we conducted a comprehensive review of the literature and assessed the evidence base from a public-health perspective. We found 89 individual documents/resources with information about T. costalimai. DNA-sequence and cytogenetic data indicate that T. costalimai belongs, together with Triatoma jatai, in a distinct clade within the 'pseudomaculata group' of South American Triatoma. Triatoma costalimai is probably a narrow endemic of the Cerrado on the upper Tocantins River Basin and associated ranges/plateaus; there, the species thrives in the sandstone/limestone outcrops typical of the "Cerrado rupestre" (rocky-soil savanna) and "mata seca decídua calcária" (limestone-soil dry forest) phytophysiognomies. Wild T. costalimai appear to feed on whatever vertebrates are available in rocky outcrops, with lizards and rodents being most common. There is persuasive evidence that house invasion/infestation by T. costalimai has increased in frequency since the 1990s. The bugs often carry Trypanosoma cruzi, often defecate while feeding, have high fecundity/fertility, and, under overtly favorable conditions, can produce two generations per year. Current knowledge suggests that T. costalimai can transmit human Chagas disease in the upper Tocantins Basin; control-surveillance systems should 'tag' the species as a potentially important local vector in the Brazilian states of Goiás and Tocantins. Further research is needed to clarify (i) the drivers and dynamics of house invasion, infestation, and reinfestation by T. costalimai and (ii) the genetic structuring and vector capacity of the species, including its wild and non-wild populations.

Winners and Losers: How Woody Encroachment Is Changing the Small Mammal Community Structure in a Neotropical Savanna

Years of fire suppression, decreases in herbivores, and global climate change have led to shifts in savannas worldwide. Natural open vegetation such as grasslands and shrublands is increasing in wood density, but the effects for small mammals are not well understood. While most of the mammal studies from the Brazilian Cerrado are concentrated in the core area of this large Neotropical savanna, its southern portions are suffering from biome shifting through woody encroachment. Herein, we surveyed a small mammal community from the southeastern boundary of Cerrado (Santa Bárbara Ecological Station) and evaluated the micro and macro environmental variables shaping community structure in order to investigate how the woody encroachment in the last 15 years may have influenced this assemblage. We recorded 17 species of marsupials and rodents along five distinct habitats in a gradient from grasslands to woodlands. Although richness was not affected by microhabitat variables, total and relative abundance varied according to habitat type and in relation to herbaceous, shrub, and tree density. Rodents such as Calomys tener and Clyomys laticeps were positively affected by increasing herb cover, Cerradomys scotti and Oligoryzomys nigripes by shrub cover, while the marsupial Didelphis albiventris had higher association with increasing tree cover. We detected an increase of 27.4% in vegetation density (EVI) between 2003 and 2018 in our study site, and this woody encroachment negatively affected the abundance of some small mammals. The open-area specialists Cryptonanus chacoensis and C. scotti had a decrease in abundance, while D. albiventris and O. nigripes were favored by woody encroachment. Our data suggest that woody encroachment is shifting community composition: small mammals often associated with grasslands and open savannas are likely to be negatively affected by woody encroachment; while species that rely on tree-covered habitats are likely to benefit from an increasing woody landscape. Therefore, forest-dwellers are gradually replacing open-vegetation inhabitants. Active management of open formations (e.g., with prescribed burning) may be needed to maintain Cerrado biodiversity, especially considering the open-area endemics.

Identification of potential new mosquito-associated viruses of adult Aedes aegypti mosquitoes from Tocantins state, Brazil

Medically important arboviruses such as dengue virus (DENV), Zika virus (ZIKV), and chikungunya virus (CHIKV) are primarily transmitted by the globally distributed mosquito Aedes aegypti. Increasing evidence suggests that the transmission of some viruses can be influenced by mosquito-specific and mosquito-borne viruses. Advancements in high-throughput sequencing (HTS) and bioinformatics have expanded our knowledge on the richness of viruses harbored by mosquitoes. HTS was used to characterize the presence of virus sequences in wild-caught adult Ae. aegypti from Tocantins (TO) state, Brazil. Samples of mosquitoes were collected in four cities of Tocantins state and submitted to RNA isolation, followed by sequencing at an Illumina HiSeq platform. Our results showed initially by Krona the presence of 3% of the sequenced reads belonging to the viral database. After further analysis, the virus sequences were found to have homology to two viral families found in insects Phenuiviridae and Metaviridae. Three possible viral strains including putative new viruses were detected and named Phasi Charoen-like phasivirus isolate To-1 (PCLV To-1), Aedes aegypti To virus 1 (AAToV1), and Aedes aegypti To virus 2 (AAToV2). The results presented in this work contribute to the growing knowledge about the diversity of viruses in mosquitoes and might be useful for future studies on the interaction between insect-specific viruses and arboviruses.

A new species of South America marsh rat (Holochilus, Cricetidae) from northeastern Brazil

Marsh rats of the genus Holochilus are broadly distributed and inhabit several distinct environments throughout South America. As an enigmatic group with a somewhat uncertain taxonomy, the composition and names of taxa have shifted throughout history, including the boundaries of Holochilus sciureus, a species formerly distributed in the lowlands of the Guianas, Peru, Bolivia, and northern, central, and northeastern of Brazil. Based on a combination of morphological and morphometric traits, and genomic sequences, we redefined species boundaries and split this wide concept of H. sciureus into three separated species, including a redefined H. sciureus, the newly erected from synonymy H. nanus, and an unnamed taxon. We describe this unnamed species, and provide emended diagnoses for the two redefined species. The newly named taxon inhabits the northeastern part of Brazil and differs from the other congeners by a unique combination of phenotypic and genomic characters.

Medium and large-sized mammals of a private protected wetland in the Cerrado-Amazon biological corridor, Brazil

Brazil is the world's richest country in biodiversity, including mammal species. In the Brazilian Cerrado biome, mammalian diversity is vast, with about 251 species, 32 of them are endemic and 22 listed as threatened species. In this work, we investigated species diversity of medium- and large-sized mammals in the private protected area RPPN Pontal do Jaburu (RPPN-PJ) and its surroundings, which is a flooded area located in an important biological corridor in the Cerrado-Amazon ecotone zone, a priority area for biodiversity conservation in Brazil. We used camera-trapping, active search (night and day), and track survey during dry season (Apr - Aug 2016). We recorded 29 mammal species, being the Carnivora order the most representative with 11 species. Regarding threat status, 35.7% of the recorded species were listed as threatened in Brazil and 32.1% worldwide. We highlight the high relative frequency of threatened species records such as Tapirus terrestris, Panthera onca, Blastocerus dichotomus, Pteronura brasiliensis, Priodontes maximus, and other, as well as the presence of the newly described aquatic mammal species Inia araguaiaensis. We stress the importance of RPPN-PJ and its surroundings for mammal conservation, which include complex habitats (wetlands) located in an important ecotone zone.

Updated and annotated checklist of recent mammals from Brazil

An updated and annotated checklist of mammals occurring in Brazil is presented. A total of 751 native species, distributed in 249 genera, 51 families and 11 orders were recorded to the country. The Brazilian mammalian fauna shows an elevated rate of endemism (30%; 223 species). Among the species evaluated by IUCN (668 species; 90%), a total of 80 (10.6% of total mammalian fauna) are Threatened, 28 (3.9%) are considered as Near Threatened, two species (0.3%) are presumable Extinct, 96 (12.8%) are considered with Deficient Data for conservation and 462 (61.6%) are considered as Least Concern. Fifteen new species were described since the last national compilation (published in 2017), which associated to new records to the country and synonimizations resulted in an increment of 30 species. Eight non-native species were introduced to the country, including the recently established Asiatic cervids Rusa unicolor (sambar) and Axis axis (chital). Seven native species (five primates and two hystricomorph rodents) have been translocated from their areas of natural occurrence to other areas inside the country.

Partitioning beta diversity to unravel mechanisms underlying the distributions of nonvolant small mammls in Brazil’s Cerrado

Species distributions and the mechanisms that produce patterns in the occupation space are recurrent themes in community ecology. Here, we examine beta diversity among assemblages of small mammals in the Cerrado domain of Brazil to partition the effects of turnover and nestedness on species distributions. Our objective was to evaluate whether balanced spatial variation in abundance (β bal) and abundance gradients (β gra) are congruent within and among habitats and localities of the Brazilian Cerrado. In addition, we wanted to understand whether ecological mechanisms, such as dispersal limitation, habitat filtering, and species sorting, drive the distribution patterns of the Cerrado small mammals. We analyzed the occurrence and abundances of small mammals from 16 localities widely distributed across the Cerrado biome, and grouped our data with respect to two distinct spatial scales. Baselga’s Bray–Curtis index of dissimilarity and its respective partitions, i.e., balanced variation in abundance (β bal) and abundance gradients (β gra), were estimated between sampling units at the two spatial scales. Thus, we used exponential models to search for distance decay in species similarity between pairs of localities and between similar habitats. Our results show that differences between small mammal assemblages in the Cerrado are driven mainly by species replacement rather than independent gain or loss of species, both at small and large scales. The spatial turnover patterns of small mammals in the Cerrado biome are determined by a combination of large scale (biogeographic, spatial) and local mechanisms (low dispersal and habitat specificity). However, processes occurring at small scales seem to be more important in species sorting than processes occurring at large scales. The spatial configuration of the landscape and the extent and quality of habitats strongly influence the rate of species turnover in Cerrado. Thus, protecting the different types of habitats should be of prime importance to conserving the diversity of Cerrado small mammals.

Is Myotis lavali (Chiroptera, Vespertilionidae) endemic to the South American dry diagonal?

Myotis lavali was described from the M. nigricans complex based on museum specimens from the Caatinga of northeastern Brazil. Current records of the species from about 10 localities suggest that M. lavali seems to occur throughout the South American dry corridor, with peripheral records in the Atlantic Forest. Based on new distribution records, we assess if M. lavali is endemic to the South American dry diagonal corridor through species distribution modeling using an ensemble approach. We obtained 35 occurrences for the species and built a consensus scenario based on 12 algorithms to model its distribution. Even using different thresholds to assign presence and absence of M. lavali, 95–99% of its predicted distribution is within the dry corridor, with few areas in the boundary of the Atlantic Forest, especially in deciduous forests. Therefore, our results support that M. lavali is indeed very likely restricted to the dry diagonal and, although it occupies forested areas, the core of its distribution lies in the Caatinga and in the Cerrado regions of Brazil.

Mammals of medium and large size in Cerrado remnants in southeastern Brazil

The Cerrado is the second largest biome in Brazil and considered a global biodiversity hotspot due to its high species richness, elevated amount of endemisms, and several anthropogenic threats. The Cerrado has more than 250 species of mammals, and about 15% are endemic. However, fragmentation and the consequent loss of native habitat threaten the maintenance of mammalian populations. In this context we carried out an inventory of medium- and large-sized mammals in Cerrado remnants in Matutina, Minas Gerais, southeastern Brazil. Sampling was performed in four remnants of Cerrado and adjacent agricultural matrices for 18 days and 16 nights in March and July 2015 with camera traps, diurnal and nocturnal censuses, and by searching for tracks and other indirect evidence. We recorded 19 species of mammals, including top predators and species vulnerable to extinction. The original vegetation cover in the study area has become severely reduced and fragmented due to agricultural expansion. However, the remnants still retain considerable diversity of medium- and large-sized mammals, making them important for the maintenance of biological diversity.

Structure of a bat community in the xerophytic Caatinga of the state of Sergipe, Northeastern Brazil

The Caatinga, a Brazilian biome that covers an area of 740,000 km2, is characterized by semi-arid climatic conditions with high temperatures and irregular rains throughout the year. The present study verified the structure of the local bat community and the seasonal variation in the abundance of bats and their diversity. We sampled four points on Serra dos Macacos and Serra de Antenor, in the municipality of Tobias Barreto, Sergipe. Field campaigns were conducted monthly between February and November 2011 in the region of the Serra dos Macacos, with the same sampling effort being applied in the dry and rainy seasons. A total sampling effort of 95,040 m2⋅h resulted in the capture of 104 specimens, representing 15 species belonging to the families Phyllostomidae (12 sp.), Vespertilionidae (2 sp.) and Mormoopidae (1 sp.). The Jackknife 1 estimate indicated the occurrence of 21.3±2.07 species in the study area. There was no difference in species diversity between the two stations (t=0.65, p=0.51). The guild of frugivorous and nectarivorous bats were the most abundant in both seasons, and most representative in the rainy season. Significant seasonal difference was found in the abundance of bats between the dry and rainy seasons (χ2=16.96; df=1; p<0.05). The results were consistent with other Caatinga studies in terms of species richness and diversity, and community structure, with a predominance of nectarivorous bats and seasonal variation in the community structure.

What is in a genus name? Conceptual and empirical issues preclude the proposed recognition of Callibella (Callitrichinae) as a genus

In a recent article, Silva et al. (Zool Scr 47:133-143, 2018) proposed the relocation of the dwarf marmoset, Mico humilis, to the so far unrecognized genus Callibella. We contend that a taxonomic scheme that recognizes Callibella as if it were a valid genus is inadequately supported, and to some extent contradicted, by the ecological and morphological information provided by the authors. We discuss why the criterion of sympatry, invoked by Silva et al. to justify the recognition of Callibella at the genus level, is uninformative for taxonomic decisions above the species level. We also show that the morphological characteristics used by Silva et al. to separate Mico humilis from the other Mico are individually variable and present in every analyzed species of the genus. Moreover, we demonstrate that the Evolutionarily Distinct and Globally Endangered (EDGE) metric, employed by those authors to attempt to justify their taxonomic proposition, makes no sense in a taxonomic context. Conceptually, the use of autapomorphies and plesiomorphies to justify using Callibella goes against one of the main objectives of a meaningful classification, that is, to allow for all kinds of inferences based on previous observations (i.e., to be inductively projectible). Based on these arguments, we demonstrate that regarding Callibella as a subgenus of Mico is the most suitable way of making the Linnean taxonomy of marmosets congruent with the phylogenetic information available for the group.

The usage of subgenera in mammalian taxonomy

In this note, I discuss the advantages of the usage of subgenera as a practical taxonomic rank in mammalian taxonomy. Use of this category preserves traditional usage, reduces nomenclatural instability and avoids unnecessary change of names. Subgenera are useful to label diagnosable clades of closely related species, especially in morphologically and ecologically diverse monophyletic genera, without alteration of traditional binomial usage. Contrary to informal names such as “divisions” or “groups”, subgenera are governed by the rules of the International Commission on Zoological Nomenclature (ICZN), having usage constrained (and stability promoted) by typification and priority.

The bats of Rio Grande do Norte state, northeastern Brazil

Abstract Rio Grande do Norte is one of the smallest states in Brazil but has a rich diversity of ecosystems, including Caatinga vegetation, remnants of Atlantic Forest, coastal habitats, mangroves and large karstic areas with caves. However, its chiropteran fauna is little known, and the state contains conspicuous gaps of information on the occurrence and distribution of bats in Brazil. In order to reduce this information gap, based on a review of scientific literature and regional mammal collections, we list 42 species of bats, including new occurrences for 13 species and discussion on their conservation status. Results show that more than half (54%) of the recorded species are phyllostomid bats, and about one third of the bats in the state roosts in underground cavities. The Caatinga harbored the highest bat richness in the state, including the occurrence of four vulnerable species (Furipterus horrens, Lonchorhina aurita, Natalus macrourus and Xeronycteris vieirai). The Atlantic Forest needs to be more sampled, including mangroves, coastal habitats and areas of Caatinga in the central region of the state (Borborema highlands), which are virtually unsurveyed. Although the recent increase of studies on bats in the state, future studies should complement conventional mistnetting with active roost search and bioacoustical records in order to obtain better data for unraveling the bat fauna of Rio Grande do Norte.

Phenotypic evolution in marmoset and tamarin monkeys (Cebidae, Callitrichinae) and a revised genus-level classification

Marmosets and tamarins (Cebidae, Callitrichinae) constitute the most species-rich subfamily of New World monkeys and one of the most diverse phenotypically. Despite the profusion of molecular phylogenies of the group, the evolution of phenotypic characters under the rapidly-emerging consensual phylogeny of the subfamily has been little studied, resulting in taxonomic proposals that have limited support from other datasets. We examined the evolution of 18 phenotypic traits (5 continuous and 13 discrete), including pelage, skull, dentition, postcrania, life-history and vocalization variables in a robust molecular phylogeny of marmoset and tamarin monkeys, quantifying their phylogenetic signal and correlations among some of the traits. At the family level, our resulting topology supports owl monkeys (Aotinae) as sister group of Callitrichinae. The topology of the callitrichine tree was congruent with previous studies except for the position of the midas group of Saguinus tamarins, which placement as sister of the bicolor group did not receive significant statistical support in both Maximum Parsimony and Bayesian Inference analyses. Our results showed that the highest value of phylogenetic signal among continuous traits was displayed by the long call character and the lowest was exhibited in the home range, intermediate values were found in characters related to osteology and skull size. Among discrete traits, pelage and osteology had similar phylogenetic signal. Based on genetic, osteological, pelage and vocalization data, we present an updated genus-level taxonomy of Callitrichinae, which recognizes six genera in the subfamily: Callimico, Callithrix, Cebuella, Mico, Leontopithecus and Saguinus. To reflect their phenotypic distinctiveness and to avoid the use of the informal "species group", we subdivided Saguinus in the subgenera Leontocebus, Saguinus and Tamarinus (revalidated here).

A gene-tree test of the traditional taxonomy of American deer: the importance of voucher specimens, geographic data, and dense sampling

The taxonomy of American deer has been established almost entirely on the basis of morphological data and without the use of explicit phylogenetic methods; hence, phylogenetic analyses including data for all of the currently recognized species, even if based on a single gene, might improve current understanding of their taxonomy. We tested the monophyly of the morphology-defined genera and species of New World deer (Odocoileini) with phylogenetic analyses of mitochondrial DNA sequences. This is the first such test conducted using extensive geographic and taxonomic sampling. Our results do not support the monophyly of Mazama, Odocoileus, Pudu, M. americana, M. nemorivaga, Od. hemionus, and Od. virginianus. Mazama contains species that belong to other genera. We found a novel sister-taxon relationship between "Mazama" pandora and a clade formed by Od. hemionus columbianus and Od. h. sitkensis, and transfer pandora to Odocoileus. The clade formed by Od. h. columbianus and Od. h. sitkensis may represent a valid species, whereas the remaining subspecies of Od. hemionus appear closer to Od. virginianus. Pudu (Pudu) puda was not found sister to Pudu (Pudella) mephistophiles. If confirmed, this result will prompt the recognition of the monotypic Pudella as a distinct genus. We provide evidence for the existence of an undescribed species now confused with Mazama americana, and identify other instances of cryptic, taxonomically unrecognized species-level diversity among populations here regarded as Mazama temama, "Mazama" nemorivaga, and Hippocamelus antisensis. Noteworthy records that substantially extend the known distributions of M. temama and "M." gouazoubira are provided, and we unveil a surprising ambiguity regarding the distribution of "M." nemorivaga, as it is described in the literature. The study of deer of the tribe Odocoileini has been hampered by the paucity of information regarding voucher specimens and the provenance of sequences deposited in GenBank. We pinpoint priorities for future systematic research on the tribe Odocoileini.