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Korkmaz FN, Gökçay Canpolat A, Dalva K, Elhan AH, Şahin M, Çorapçıoğlu D, Demir Ö. Determination of the Relationship Between the Development and Recurrence of Subacute Thyroiditis and Human Leukocyte Antigen Subtypes. Genet Test Mol Biomarkers 2024; 28:2-9. [PMID: 38294356 DOI: 10.1089/gtmb.2023.0386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024] Open
Abstract
Background: There are several studies investigating the role of human leukocyte antigens (HLA) in the development and recurrence of subacute thyroiditis (SAT). The HLA subtypes associated with SAT were usually determined in a population-based manner and HLA-B*35, HLA-B*18:01, HLA-C*04:01, and HLA-DRB1*01 were detected to play a role in the disease susceptibility and prognosis. The aim of this study was to determine HLA alleles associated with the tendency of recurrence and prevention of SAT within the Turkish population. Methods: This prospective study was conducted with 51 SAT patients and 720 healthy bone marrow donor volunteers. HLA-A, -B, -C, -DRB1, and -DQB1 were genotyped using next-generation sequencing. Results: The frequency of HLA-A*02:09, HLA-B*35:01/35:02/35:03, HLA-C*04:01, HLA-DRB1*12:01, and DRB1*13:03 were associated with an increased risk of SAT development (Odds Ratio: 22.4, 9.5, 10.3, 4.2, and 3.5, respectively). While HLA-A*02:09, HLA-B*35:01, HLA-B*44:02 HLA-C*07:18, and HLA-C*16:04 were associated with nonrelapsing SAT, HLA-DR*12:01was associated with relapsing SAT. HLA-B*35:02, HLA-B*35:03, and HLA-C*04:01 were more frequent both in relapsing and nonrelapsing groups according to control group. The frequency of HLA-B*18:01, reported as a risk factor previously, was similar in the SAT and control groups (p = 0.959). HLA-DRB1*11:01 was associated with a lower risk of SAT development. Conclusions: Along with -B*358 and -C*04, HLA-A*02:09 was detected as an important risk factor for SAT development in our population. HLA-DRB1*11:01 appears to be the protective HLA subtype against SAT. HLA-A*02:09, HLA-B*35:01, HLA-B*44:02, HLA-C*07:18, HLA-C*16:04, HLA-DQ*06:03, and HLA-DR*12:01 subtypes can establish a tendency to relapsing or nonrelapsing SAT.
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Affiliation(s)
- Fatma Nur Korkmaz
- Department of Internal Medicine, Endocrinology and Metabolism, Faculty of Medicine, Ankara University, Ankara, Türkiye
| | - Asena Gökçay Canpolat
- Department of Internal Medicine, Endocrinology and Metabolism, Faculty of Medicine, Ankara University, Ankara, Türkiye
| | - Klara Dalva
- Tissue Typing Laboratory, Department of Internal Medicine, Hematology, Faculty of Medicine, Ankara University, Ankara, Türkiye
| | - Atilla Halil Elhan
- Department of Biostatistics, Faculty of Medicine, Ankara University, Ankara, Türkiye
| | - Mustafa Şahin
- Department of Internal Medicine, Endocrinology and Metabolism, Faculty of Medicine, Ankara University, Ankara, Türkiye
| | - Demet Çorapçıoğlu
- Department of Internal Medicine, Endocrinology and Metabolism, Faculty of Medicine, Ankara University, Ankara, Türkiye
| | - Özgür Demir
- Department of Internal Medicine, Endocrinology and Metabolism, Faculty of Medicine, Ankara University, Ankara, Türkiye
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Cho WK, Baek I, Kim SE, Kim M, Kim T, Suh B. Association of ITM2A rs1751094 polymorphism on X chromosome in Korean pediatric patients with autoimmune thyroid disease. Immun Inflamm Dis 2023; 11:e800. [PMID: 36988246 PMCID: PMC10013136 DOI: 10.1002/iid3.800] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Revised: 02/08/2023] [Accepted: 02/21/2023] [Indexed: 03/17/2023] Open
Abstract
Background Autoimmune thyroid disease (AITD) manifests with a female predominance, and much attention has been directed towards the integral membrane protein 2 A (ITM2A) gene located on the X chromosome. Methods In a study of 166 pediatric patients with autoimmune thyroid disease (AITD), the ITM2A rs1751094 single‐nucleotide polymorphism (SNP) was genotyped. The sample comprised 143 females and 23 males, with 67 patients diagnosed with Hashimoto chronic thyroiditis (HD) and 99 with Graves' disease (GD). In the 99 GD patients, 49 (49.5%) exhibited thyroid‐associated ophthalmopathy (TAO). Among the 85 GD patients, 70.6% (60/85) were considered intractable GD. The results were compared to those from 198 healthy Korean individuals, including 97 females and 101 males. Results The frequency of the rs1751094 C allele and CC/AC genotype were higher in AITD, GD and HD patients compared to controls, while the frequency of the A allele and AA genotype were lower. The results were more pronounced in female AITD and GD patients compared to male patients. The association was also found in intractable GD and TAO patients. Target SNP fits Hardy–Weinberg equilibrium. Conclusions These findings indicate that the ITM2A gene polymorphism on the X chromosome may contribute to the immunological basis of female‐predominant AITD in Korean children.
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Affiliation(s)
- Won K. Cho
- Department of Pediatrics, College of Medicine, St. Vincent's HospitalThe Catholic University of KoreaSeoulKorea
| | - In‐Cheol Baek
- Catholic Hematopoietic Stem Cell Bank, College of MedicineThe Catholic University of KoreaSeoulKorea
| | - Sung E. Kim
- Department of Pediatrics, Incheon St. Mary's Hospital, College of MedicineThe Catholic University of KoreaSeoulKorea
| | - Mirae Kim
- Catholic Hematopoietic Stem Cell Bank, College of MedicineThe Catholic University of KoreaSeoulKorea
| | - Tai‐Gyu Kim
- Catholic Hematopoietic Stem Cell Bank, College of MedicineThe Catholic University of KoreaSeoulKorea,Department of Microbiology, College of MedicineThe Catholic University of KoreaSeoulKorea
| | - Byung‐Kyu Suh
- Department of Pediatrics, College of Medicine, Seoul St. Mary's HospitalThe Catholic University of KoreaSeoulKorea
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Cho WK, Shin HR, Lee NY, Kim SK, Ahn MB, Baek IC, Kim TG, Suh BK. GPR174 and ITM2A Gene Polymorphisms rs3827440 and rs5912838 on the X chromosome in Korean Children with Autoimmune Thyroid Disease. Genes (Basel) 2020; 11:genes11080858. [PMID: 32727090 PMCID: PMC7465061 DOI: 10.3390/genes11080858] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Revised: 07/21/2020] [Accepted: 07/22/2020] [Indexed: 12/12/2022] Open
Abstract
(1) Background: Autoimmune thyroid diseases (AITDs) are female predominant and much attention has been focused on G protein-coupled receptor 174 (GPR174) and integral membrane protein 2A (ITM2A) on the X chromosome as Grave's disease (GD) susceptible locus. (2) Methods: We genotyped four single nucleotide polymorphisms (SNPs), rs3810712, rs3810711, rs3827440, and rs5912838, of GPR174 and ITM2A in 115 Korean children with AITD (M = 25 and F = 90; GD = 74 (14.7 ± 3.6 years), HD = 41 (13.4 ± 3.2 years); GD-thyroid-associated ophthalmopathy (TAO) = 40, GD-non-TAO=34) and 204 healthy Korean individuals (M = 104 and F = 100). The data were analyzed by sex-stratified or combined. (3) Results: Three SNPs, rs3810712, rs3810711 and rs3827440, were found to be in perfect linkage disequilibrium (D' = 1, r2 = 1). In AITD, HD, GD, GD-TAO, and GD-non-TAO patients, rs3827440 TT/T and rs5912838 AA/A were susceptible and rs3827440 CC/C and rs5912838 CC/C were protective genotypes. When analyzed by sex, rs3827440 TT and rs5912838 AA were susceptible and rs3827440 CC and rs5912838 CC were protective genotypes in female AITD, GD, GD-TAO, and GD-non-TAO subjects. In male AITD patients, rs3827440 T and rs5912838 A were susceptible and rs3827440 C and rs5912838 C were protective genotypes. (4) Conclusions: Polymorphisms in GPR174 and ITM2A genes on the X chromosome might be associated with AITD in Korean children.
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Affiliation(s)
- Won Kyoung Cho
- Department of Pediatrics, College of Medicine, St. Vincent’s Hospital, The Catholic University of Korea, Seoul 065941, Korea;
| | - Hye-Ri Shin
- Catholic Hematopoietic Stem Cell Bank, College of Medicine, The Catholic University of Korea, Seoul 065941, Korea; (H.-R.S.); (I.-C.B.)
| | - Na Yeong Lee
- Department of Pediatrics, College of Medicine, Seoul St. Mary’s Hospital, The Catholic University of Korea, Seoul 065941, Korea; (N.Y.L.); (S.K.K.); (M.B.A.)
| | - Seul Ki Kim
- Department of Pediatrics, College of Medicine, Seoul St. Mary’s Hospital, The Catholic University of Korea, Seoul 065941, Korea; (N.Y.L.); (S.K.K.); (M.B.A.)
| | - Moon Bae Ahn
- Department of Pediatrics, College of Medicine, Seoul St. Mary’s Hospital, The Catholic University of Korea, Seoul 065941, Korea; (N.Y.L.); (S.K.K.); (M.B.A.)
| | - In-Cheol Baek
- Catholic Hematopoietic Stem Cell Bank, College of Medicine, The Catholic University of Korea, Seoul 065941, Korea; (H.-R.S.); (I.-C.B.)
| | - Tai-Gyu Kim
- Catholic Hematopoietic Stem Cell Bank, College of Medicine, The Catholic University of Korea, Seoul 065941, Korea; (H.-R.S.); (I.-C.B.)
- Department of Microbiology, College of Medicine, The Catholic University of Korea, Seoul 065941, Korea
- Correspondence: (T.-G.K.); (B.-K.S.); Tel.: +82-2-2258-7341 (T.-G.K.); +82-2-2258-6185 (B.-K.S.); Fax: +82-2-594-7355 (T.-G.K.); 82-2-532-6185 (B.-K.S.)
| | - Byung-Kyu Suh
- Department of Pediatrics, College of Medicine, Seoul St. Mary’s Hospital, The Catholic University of Korea, Seoul 065941, Korea; (N.Y.L.); (S.K.K.); (M.B.A.)
- Correspondence: (T.-G.K.); (B.-K.S.); Tel.: +82-2-2258-7341 (T.-G.K.); +82-2-2258-6185 (B.-K.S.); Fax: +82-2-594-7355 (T.-G.K.); 82-2-532-6185 (B.-K.S.)
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Hao J, Liu Y, Xu J, Wang W, Wen Y, He A, Fan Q, Guo X, Zhang F. Genome-wide DNA methylation profile analysis identifies differentially methylated loci associated with ankylosis spondylitis. Arthritis Res Ther 2017; 19:177. [PMID: 28743287 PMCID: PMC5526246 DOI: 10.1186/s13075-017-1382-1] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Accepted: 07/06/2017] [Indexed: 01/19/2023] Open
Abstract
Background Ankylosing spondylitis (AS) is a chronic rheumatic and autoimmune disease. Little is known about the potential role of DNA methylation in the pathogenesis of AS. This study was undertaken to explore the potential role of DNA methylation in the genetic mechanism of AS. Methods In this study, we compared the genome-wide DNA methylation profiles of peripheral blood mononuclear cells (PBMCs) between five AS patients and five healthy subjects, using the Illumina Infinium HumanMethylation450 BeadChip. Quantitative real-time reverse transcription-polymerase chain reaction (qRT-PCR) was performed to validate the relevance of the identified differentially methylated genes for AS, using another independent sample of five AS patients and five healthy subjects. Results Compared with healthy controls, we detected 1915 differentially methylated CpG sites mapped to 1214 genes. The HLA-DQB1 gene achieved the most significant signal (cg14323910, adjusted P = 1.84 × 10–6, β difference = 0.5634) for AS. Additionally, the CpG site cg04777551 of HLA-DQB1 presented a suggestive association with AS (adjusted P = 1.46 × 10–3, β difference = 0.3594). qRT-PCR observed that the mRNA expression level of HLA-DQB1 in AS PBMCs was significantly lower than that in healthy control PBMCs (ratio = 0.48 ± 0.10, P < 0.001). Gene Ontology (GO) and KEGG pathway enrichment analysis of differentially methylated genes identified four GO terms and 10 pathways for AS, functionally related to antigen dynamics and function. Conclusions Our results demonstrated the altered DNA methylation profile of AS and implicated HLA-DQB1 in the development of AS. Electronic supplementary material The online version of this article (doi:10.1186/s13075-017-1382-1) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Jiangcan Hao
- Key Laboratory of Trace Elements and Endemc Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China
| | - Yang Liu
- Xi'an No.5 Hospital, Xi'an, People's Republic of China
| | - Jiawen Xu
- Department of Clinical Medicine, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China
| | - Wenyu Wang
- Key Laboratory of Trace Elements and Endemc Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China
| | - Yan Wen
- Key Laboratory of Trace Elements and Endemc Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China
| | - Awen He
- Key Laboratory of Trace Elements and Endemc Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China
| | - Qianrui Fan
- Key Laboratory of Trace Elements and Endemc Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China
| | - Xiong Guo
- Key Laboratory of Trace Elements and Endemc Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China
| | - Feng Zhang
- Key Laboratory of Trace Elements and Endemc Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China.
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Jin PP, Sun LL, Ding BJ, Qin N, Zhou B, Xia F, Li L, Liu LJ, Liu XD, Zhao G, Wang W, Deng YC, Hou SX. Human Leukocyte Antigen DQB1 (HLA-DQB1) Polymorphisms and the Risk for Guillain-Barré Syndrome: A Systematic Review and Meta-Analysis. PLoS One 2015. [PMID: 26204120 PMCID: PMC4512729 DOI: 10.1371/journal.pone.0131374] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Guillain-Barré syndrome (GBS) is an autoimmune disorder of the peripheral nervous system. There is no consensus regarding reported associations between human leukocyte antigen DQB1 (HLA-DQB1) polymorphisms and the risk for developing GBS. Here, we evaluated possible associations between HLA-DQB1 polymorphisms and the risk for GBS using a meta-analysis. We searched PubMed for case-control genetic association studies for HLA-DQB1 polymorphisms (*020x, *030x, *040x, *050x, and *060x) and the risk for GBS. Fixed-effect meta-analytical methods were used for the outcome measure and subgroup analyses. Estimated odds ratios (ORs) and 95% confidence intervals (CIs) were used to investigate the associations between HLA-DQB1 polymorphisms and the risk for GBS. Nine case-control studies involving 780 cases of GBS and 1353 controls were identified in the current study. The meta-analysis demonstrated no significant associations between HLA-DQB1 polymorphisms and the risk for GBS in Asian and Caucasian populations. There were two associations that approached significance: HLA-DQB1*030x in Asian patients (P = 0.07; OR: 0.76, 95% CI: 0.57–1.03) and HLA-DQB1*060x in all patients (P = 0.08; OR: 1.48, 95% CI: 0.96–2.29). Additional studies with larger sample sizes are required to establish a definitive assessment of the contribution of HLA-DQB1 polymorphisms to GBS risk.
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Affiliation(s)
- Peng-Peng Jin
- Centre for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, 2800 Gongwei Road, Shanghai 201399, China
| | - Li-Li Sun
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Bo-Jun Ding
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Na Qin
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Bin Zhou
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Feng Xia
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Li Li
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Li-Juan Liu
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Xue-Dong Liu
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Gang Zhao
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Wen Wang
- Unit of Evidence-Based Medicine, K. K. Leung Brain Research Centre, Fourth Military Medical University, Xi’an 710032, China
| | - Yan-Chun Deng
- Department of Neurology, Xijing Hospital, Fourth Military Medical University, Xi’an 710032, China
| | - Shuang-Xing Hou
- Department of Neurology, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, 2800 Gongwei Road, Shanghai 201399, China
- * E-mail:
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Cho WK, Jung MH, Park SH, Baek IC, Choi HB, Kim TG, Suh BK. Association of MICA Alleles with Autoimmune Thyroid Disease in Korean Children. Int J Endocrinol 2012; 2012:235680. [PMID: 23209462 PMCID: PMC3504384 DOI: 10.1155/2012/235680] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/07/2012] [Revised: 10/19/2012] [Accepted: 10/20/2012] [Indexed: 11/24/2022] Open
Abstract
Background. Major histocompatibility complex class I chain-related gene A (MICA) is a ligand for the activating NKG2D receptor expressed on natural killer (NK) cells. We aimed to assess the association of MICA polymorphism with autoimmune thyroid disease (AITD) in Korean children. Methods. Eighty-one patients with AITD were recruited. We analyzed MICA polymorphisms by PCR-SSP and compared the results with those of 70 healthy controls. Results. In AITD, the allele frequencies of MICA∗010 (OR = 2.21; 95% CI, 1.30-3.76, P < 0.003, P(c) < 0.042) were higher than those of controls. Patients who did not have thyroid-associated ophthalmopathy showed higher frequencies of MICA∗010 (OR = 2.99; 95% CI, 1.47-6.08, P < 0.003, P(c) < 0.042) and lower frequencies of MICA∗008 (OR = 0.08; 95% CI, 0.01-0.62, P < 0.001, P(c) < 0.014) compared to those of controls. HLA-B∗46, which shows the strongest association with AITD compared with other HLA alleles, showed the strongest linkage disequilibrium with MICA∗010. Analyses of the associations between MICA∗010 and HLA-B∗46 with AITD suggest an association of the MICA allele with AITD. Conclusions. Our results suggest that innate immunity might contribute to the pathogenesis of AITD.
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Affiliation(s)
- Won Kyoung Cho
- Department of Pediatrics, College of Medicine and Seoul St. Mary's Hospital, The Catholic University of Korea, 505 Banpo-Dong, Seocho-Gu, Seoul 137-040, Republic of Korea
| | - Min Ho Jung
- Department of Pediatrics, College of Medicine and Seoul St. Mary's Hospital, The Catholic University of Korea, 505 Banpo-Dong, Seocho-Gu, Seoul 137-040, Republic of Korea
| | - So Hyun Park
- Department of Pediatrics, College of Medicine and Seoul St. Mary's Hospital, The Catholic University of Korea, 505 Banpo-Dong, Seocho-Gu, Seoul 137-040, Republic of Korea
| | - In Cheol Baek
- Department of Microbiology, College of Medicine and Seoul St. Mary's Hospital, The Catholic University of Korea, 505 Banpo-Dong, Seocho-Gu, Seoul 137-040, Republic of Korea
| | - Hee-Baeg Choi
- Catholic Hematopoietic Stem Cell Bank, College of Medicine and Seoul St. Mary's Hospital, The Catholic University of Korea, 505 Banpo-Dong, Seocho-Gu, Seoul 137-040, Republic of Korea
| | - Tai-Gyu Kim
- Department of Microbiology, College of Medicine and Seoul St. Mary's Hospital, The Catholic University of Korea, 505 Banpo-Dong, Seocho-Gu, Seoul 137-040, Republic of Korea
- Catholic Hematopoietic Stem Cell Bank, College of Medicine and Seoul St. Mary's Hospital, The Catholic University of Korea, 505 Banpo-Dong, Seocho-Gu, Seoul 137-040, Republic of Korea
- *Tai-Gyu Kim: and
| | - Byung-Kyu Suh
- Department of Pediatrics, College of Medicine and Seoul St. Mary's Hospital, The Catholic University of Korea, 505 Banpo-Dong, Seocho-Gu, Seoul 137-040, Republic of Korea
- *Byung-Kyu Suh:
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