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Eskandarion MR, Tabrizi AA, Shirkoohi R, Raoofian R, Naji M, Pazhoomand R, Salari H, Samadirad B, Sabouri A, Zohour MM, Namazi H, Farhadi P, Baratieh Z, Sayyari M, Dadgarmoghaddam M, Safdarian E, Nikbakht A, Golshan F, Baybordi F, Madhaji E, ShohodiFar S, Tabasi M, Mohebbi R. Haplotype diversity of 17 Y-STR in the Iranian population. BMC Genomics 2024; 25:332. [PMID: 38566001 PMCID: PMC10986111 DOI: 10.1186/s12864-024-10217-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 03/12/2024] [Indexed: 04/04/2024] Open
Abstract
The current study aimed to evaluate Y chromosome haplotypes obtained from 1353 unrelated Iranian males using the AmpFlSTRTM YfilerTM kit; 1353 out of the 1353 identified haplotypes were unique. The haplotype diversity (HD) and discriminating capacity (DC) values were 1.00000 and 0.997, respectively. Analysis of genetic distance was performed using molecular variance (AMOVA) and multidimensional scaling plots (MDS), revealing a statistically significant difference between the study population and previous data reported for other Iranian populations and other neighboring countries. The present findings are likely to be useful for forensic casework analyses and kinship investigations.
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Affiliation(s)
- Mohammad Reza Eskandarion
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
- Cancer Research Institute, Imam Khomeini Hospital Complex, Tehran University of Medical Sciences, Tehran, Iran
| | | | - Reza Shirkoohi
- Cancer Research Institute, Imam Khomeini Hospital Complex, Tehran University of Medical Sciences, Tehran, Iran
| | - Reza Raoofian
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Masume Naji
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Reza Pazhoomand
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Hooman Salari
- Plant Genetics and Production, Razi University, Kermanshah, Iran
| | - Bahram Samadirad
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Alireza Sabouri
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | | | - Hadi Namazi
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Pegah Farhadi
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Zohre Baratieh
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Minoo Sayyari
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Maliheh Dadgarmoghaddam
- Department of Community Medicine, School of Medicine, Mashhad University of Medical Science, Mashhad, Iran
| | - Esmat Safdarian
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Afrooz Nikbakht
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Farnaz Golshan
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Fatemeh Baybordi
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Elham Madhaji
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Shadi ShohodiFar
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
| | - Mohsen Tabasi
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
- Department of Molecular Biology, Pasteur Institute of Iran, Pasteur Ave, Tehran, Iran
| | - Ramezan Mohebbi
- Legal Medicine Research Center, Legal Medicine Organization, Tehran, Iran
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Alinaghi S, Mohseni M, Fattahi Z, Beheshtian M, Ghodratpour F, Zare Ashrafi F, Arzhangi S, Jalalvand K, Najafipour R, Khorram Khorshid HR, Kahrizi K, Najmabadi H. Genetic Analysis of 27 Y-STR Haplotypes in 11 Iranian Ethnic Groups. ARCHIVES OF IRANIAN MEDICINE 2024; 27:79-88. [PMID: 38619031 PMCID: PMC11017261 DOI: 10.34172/aim.2024.13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Accepted: 01/23/2024] [Indexed: 04/16/2024]
Abstract
BACKGROUND The study of Y-chromosomal variations provides valuable insights into male susceptibility in certain diseases like cardiovascular disease (CVD). In this study, we analyzed paternal lineage in different Iranian ethnic groups, not only to identify developing medical etiology, but also to pave the way for gender-specific targeted strategies and personalized medicine in medical genetic research studies. METHODS The diversity of eleven Iranian ethnic groups was studied using 27 Y-chromosomal short tandem repeat (Y-STR) haplotypes from Y-filer® Plus kit. Analysis of molecular variance (AMOVA) based on pair-wise RST along with multidimensional scaling (MDS) calculation and Network phylogenic analysis was employed to quantify the differences between 503 unrelated individuals from each ethnicity. RESULTS Results from AMOVA calculation confirmed that Gilaks and Azeris showed the largest genetic distance (RST=0.35434); however, Sistanis and Lurs had the smallest considerable genetic distance (RST=0.00483) compared to other ethnicities. Although Azeris had a considerable distance from other ethnicities, they were still close to Turkmens. MDS analysis of ethnic groups gave the indication of lack of similarity between different ethnicities. Besides, network phylogenic analysis demonstrated insignificant clustering between samples. CONCLUSION The AMOVA analysis results explain that the close distance of Azeris and Turkmens may be the effect of male-dominant expansions across Central Asia that contributed to historical and demographics of populations in the region. Insignificant differences in network analysis could be the consequence of high mutation events that happened in the Y-STR regions over the years. Considering the ethnic group affiliations in medical research, our results provided an understanding and characterization of Iranian male population for future medical and population genetics studies.
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Affiliation(s)
- Somayeh Alinaghi
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | - Marzieh Mohseni
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | - Zohreh Fattahi
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | - Maryam Beheshtian
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | - Fatemeh Ghodratpour
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | - Farzane Zare Ashrafi
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | - Sanaz Arzhangi
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | - Khadijeh Jalalvand
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | - Reza Najafipour
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | | | - Kimia Kahrizi
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
| | - Hossein Najmabadi
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
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