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Salimi Y, Mansouri Z, Amini M, Mainta I, Zaidi H. Explainable AI for automated respiratory misalignment detection in PET/CT imaging. Phys Med Biol 2024; 69:215036. [PMID: 39419113 DOI: 10.1088/1361-6560/ad8857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2024] [Accepted: 10/17/2024] [Indexed: 10/19/2024]
Abstract
Purpose.Positron emission tomography (PET) image quality can be affected by artifacts emanating from PET, computed tomography (CT), or artifacts due to misalignment between PET and CT images. Automated detection of misalignment artifacts can be helpful both in data curation and in facilitating clinical workflow. This study aimed to develop an explainable machine learning approach to detect misalignment artifacts in PET/CT imaging.Approach.This study included 1216 PET/CT images. All images were visualized and images with respiratory misalignment artifact (RMA) detected. Using previously trained models, four organs including the lungs, liver, spleen, and heart were delineated on PET and CT images separately. Data were randomly split into cross-validation (80%) and test set (20%), then two segmentations performed on PET and CT images were compared and the comparison metrics used as predictors for a random forest framework in a 10-fold scheme on cross-validation data. The trained models were tested on 20% test set data. The model's performance was calculated in terms of specificity, sensitivity, F1-Score and area under the curve (AUC).Main results.Sensitivity, specificity, and AUC of 0.82, 0.85, and 0.91 were achieved in ten-fold data split. F1_score, sensitivity, specificity, and AUC of 84.5 vs 82.3, 83.9 vs 83.8, 87.7 vs 83.5, and 93.2 vs 90.1 were achieved for cross-validation vs test set, respectively. The liver and lung were the most important organs selected after feature selection.Significance.We developed an automated pipeline to segment four organs from PET and CT images separately and used the match between these segmentations to decide about the presence of misalignment artifact. This methodology may follow the same logic as a reader detecting misalignment through comparing the contours of organs on PET and CT images. The proposed method can be used to clean large datasets or integrated into a clinical scanner to indicate artifactual cases.
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Affiliation(s)
- Yazdan Salimi
- Division of Nuclear medicine and Molecular Imaging, Geneva University Hospital, Geneva, Switzerland
| | - Zahra Mansouri
- Division of Nuclear medicine and Molecular Imaging, Geneva University Hospital, Geneva, Switzerland
| | - Mehdi Amini
- Division of Nuclear medicine and Molecular Imaging, Geneva University Hospital, Geneva, Switzerland
| | - Ismini Mainta
- Division of Nuclear medicine and Molecular Imaging, Geneva University Hospital, Geneva, Switzerland
| | - Habib Zaidi
- Division of Nuclear medicine and Molecular Imaging, Geneva University Hospital, Geneva, Switzerland
- Department of Nuclear Medicine and Molecular Imaging, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands
- Department of Nuclear Medicine, University of Southern Denmark, Odense, Denmark
- University Research and Innovation Center, Óbuda University, Budapest, Hungary
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Meng QL, Yang R, Wu RZ, Xu L, Liu H, Yang G, Dong Y, Wang F, Chen Z, Jiang H. Evaluation of a respiratory motion-corrected image reconstruction algorithm in 2-[ 18F]FDG and [ 68Ga]Ga-DOTA-NOC PET/CT: impacts on image quality and tumor quantification. Quant Imaging Med Surg 2023; 13:370-383. [PMID: 36620155 PMCID: PMC9816722 DOI: 10.21037/qims-22-557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Accepted: 10/31/2022] [Indexed: 11/23/2022]
Abstract
Background Respiratory motions may cause artifacts on positron emission tomography (PET) images that degrade image quality and quantification accuracy. This study aimed to evaluate the effect of a respiratory motion-corrected image reconstruction (MCIR) algorithm on image quality and tumor quantification compared with nongated/nonmotion-corrected reconstruction. Methods We used a phantom consisting of 5 motion spheres immersed in a chamber driven by a motor. The spheres and the background chamber were filled with 18F solution at a sphere-to-background ratio of 5:1. We enrolled 42 and 16 patients undergoing 2-deoxy-2-[18F]fluoro-D-glucose {2-[18F]FDG} and 68Ga-labeled [1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid]-1-Nal3-octreotide {[68Ga]Ga-DOTA-NOC} PET/computed tomography (CT) from whom 74 and 30 lesions were segmented, respectively. Three reconstructions were performed: data-driven gating-based motion correction (DDGMC), external vital signal module-based motion correction (VSMMC), and noncorrection reconstruction. The standardized uptake values (SUVs) and the volume of the spheres and the lesions were measured and compared among the 3 reconstruction groups. The image noise in the liver was measured, and the visual image quality of motion artifacts was scored by radiologists in the patient study. Results In the phantom study, the spheres' SUVs increased by 26-36%, and the volumes decreased by 35-38% in DDGMC and VSMMC compared with the noncorrection group. In the 2-[18F]FDG PET patient study, the lesions' SUVs had a median increase of 10.87-12.65% while the volumes had a median decrease of 14.88-15.18% in DDGMC and VSMMC compared with those of noncorrection. In the [68Ga]Ga-DOTA-NOC PET patient study, the lesions' SUVs increased by 14.23-15.45%, and the volumes decreased by 19.11-20.94% in DDGMC and VSMMC. The image noise in the liver was equal between the DDGMC, VSMMC, and noncorrection groups. Radiologists found improved image quality in more than 45% of the cases in DDGMC and VSMMC compared with the noncorrection group. There was no statistically significant difference in SUVs, volumes, or visual image quality scores between DDGMC and VSMMC. Conclusions MCIR improves tumor quantification accuracy and visual image quality by reducing respiratory motion artifacts without compromised image noise performance or elongated acquisition time in 2-[18F]FDG and [68Ga]Ga-DOTA-NOC PET/CT tumor imaging. The performance of DDG-driven MCIR is as good as that of the external device-driven solution.
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Affiliation(s)
- Qing-Le Meng
- Department of Nuclear Medicine, Nanjing First Hospital, Nanjing Medical University, Nanjing, China
| | - Rui Yang
- Department of Nuclear Medicine, Nanjing First Hospital, Nanjing Medical University, Nanjing, China
| | - Run-Ze Wu
- United Imaging Healthcare, Shanghai, China
| | - Lei Xu
- Department of Nuclear Medicine, Nanjing First Hospital, Nanjing Medical University, Nanjing, China
| | - Hao Liu
- United Imaging Healthcare, Shanghai, China
| | - Gang Yang
- United Imaging Healthcare, Shanghai, China
| | - Yun Dong
- United Imaging Healthcare, Shanghai, China
| | - Feng Wang
- Department of Nuclear Medicine, Nanjing First Hospital, Nanjing Medical University, Nanjing, China
| | - Zhengguo Chen
- National Health Commission Key Laboratory of Nuclear Technology Medical Transformation, Mianyang Central Hospital, School of Medicine, University of Electronic Science and Technology of China, Mianyang, China
| | - Hongbing Jiang
- Department of Medical Equipment, Nanjing First Hospital, Nanjing Medical University, Nanjing, China;,Nanjing Emergency Medical Center, Nanjing, China
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Sun T, Wu Y, Bai Y, Wang Z, Shen C, Wang W, Li C, Hu Z, Liang D, Liu X, Zheng H, Yang Y, Wang M. An iterative image-based inter-frame motion compensation method for dynamic brain PET imaging. Phys Med Biol 2022; 67. [PMID: 35021156 DOI: 10.1088/1361-6560/ac4a8f] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 01/12/2022] [Indexed: 11/11/2022]
Abstract
As a non-invasive imaging tool, positron emission tomography (PET) plays an important role in brain science and disease research. Dynamic acquisition is one way of brain PET imaging. Its wide application in clinical research has often been hindered by practical challenges, such as patient involuntary movement, which could degrade both image quality and the accuracy of the quantification. This is even more obvious in scans of patients with neurodegeneration or mental disorders. Conventional motion compensation methods were either based on images or raw measured data, were shown to be able to reduce the effect of motion on the image quality. As for a dynamic PET scan, motion compensation can be challenging as tracer kinetics and relatively high noise can be present in dynamic frames. In this work, we propose an image-based inter-frame motion compensation approach specifically designed for dynamic brain PET imaging. Our method has an iterative implementation that only requires reconstructed images, based on which the inter-frame subject movement can be estimated and compensated. The method utilized tracer-specific kinetic modelling and can deal with simple and complex movement patterns. The synthesized phantom study showed that the proposed method can compensate for the simulated motion in scans with18F-FDG,18F-Fallypride and18F-AV45. Fifteen dynamic18F-FDG patient scans with motion artifacts were also processed. The quality of the recovered image was superior to the one of the non-corrected images and the corrected images with other image-based methods. The proposed method enables retrospective image quality control for dynamic brain PET imaging, hence facilitating the applications of dynamic PET in clinics and research.
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Affiliation(s)
- Tao Sun
- Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, People's Republic of China
| | - Yaping Wu
- Henan Provincial People's Hospital and the People's Hospital of Zhengzhou, University of Zhengzhou, People's Republic of China
| | - Yan Bai
- Henan Provincial People's Hospital and the People's Hospital of Zhengzhou, University of Zhengzhou, People's Republic of China
| | - Zhenguo Wang
- Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, People's Republic of China
| | - Chushu Shen
- Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, People's Republic of China
| | - Wei Wang
- United Imaging Healthcare, Shanghai, People's Republic of China
| | - Chenwei Li
- United Imaging Healthcare, Shanghai, People's Republic of China
| | - Zhanli Hu
- Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, People's Republic of China
| | - Dong Liang
- Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, People's Republic of China
| | - Xin Liu
- Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, People's Republic of China
| | - Hairong Zheng
- Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, People's Republic of China
| | - Yongfeng Yang
- Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, People's Republic of China
| | - Meiyun Wang
- Henan Provincial People's Hospital and the People's Hospital of Zhengzhou, University of Zhengzhou, People's Republic of China
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Lamare F, Bousse A, Thielemans K, Liu C, Merlin T, Fayad H, Visvikis D. PET respiratory motion correction: quo vadis? Phys Med Biol 2021; 67. [PMID: 34915465 DOI: 10.1088/1361-6560/ac43fc] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 12/16/2021] [Indexed: 11/12/2022]
Abstract
Positron emission tomography (PET) respiratory motion correction has been a subject of great interest for the last twenty years, prompted mainly by the development of multimodality imaging devices such as PET/computed tomography (CT) and PET/magnetic resonance imaging (MRI). PET respiratory motion correction involves a number of steps including acquisition synchronization, motion estimation and finally motion correction. The synchronization steps include the use of different external device systems or data driven approaches which have been gaining ground over the last few years. Patient specific or generic motion models using the respiratory synchronized datasets can be subsequently derived and used for correction either in the image space or within the image reconstruction process. Similar overall approaches can be considered and have been proposed for both PET/CT and PET/MRI devices. Certain variations in the case of PET/MRI include the use of MRI specific sequences for the registration of respiratory motion information. The proposed review includes a comprehensive coverage of all these areas of development in field of PET respiratory motion for different multimodality imaging devices and approaches in terms of synchronization, estimation and subsequent motion correction. Finally, a section on perspectives including the potential clinical usage of these approaches is included.
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Affiliation(s)
- Frederic Lamare
- Nuclear Medicine Department, University Hospital Centre Bordeaux Hospital Group South, ., Bordeaux, Nouvelle-Aquitaine, 33604, FRANCE
| | - Alexandre Bousse
- LaTIM, INSERM UMR1101, Université de Bretagne Occidentale, ., Brest, Bretagne, 29285, FRANCE
| | - Kris Thielemans
- University College London Institute of Nuclear Medicine, UCL Hospital, Tower 5, 235 Euston Road, London, NW1 2BU, UNITED KINGDOM OF GREAT BRITAIN AND NORTHERN IRELAND
| | - Chi Liu
- Department of Diagnostic Radiology, Yale University School of Medicine Department of Radiology and Biomedical Imaging, PO Box 208048, 801 Howard Avenue, New Haven, Connecticut, 06520-8042, UNITED STATES
| | - Thibaut Merlin
- LaTIM, INSERM UMR1101, Universite de Bretagne Occidentale, ., Brest, Bretagne, 29285, FRANCE
| | - Hadi Fayad
- Weill Cornell Medicine - Qatar, ., Doha, ., QATAR
| | - Dimitris Visvikis
- LaTIM, UMR1101, Universite de Bretagne Occidentale, INSERM, Brest, Bretagne, 29285, FRANCE
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Holman BF, Cuplov V, Millner L, Endozo R, Maher TM, Groves AM, Hutton BF, Thielemans K. Improved quantitation and reproducibility in multi-PET/CT lung studies by combining CT information. EJNMMI Phys 2018; 5:14. [PMID: 29869186 PMCID: PMC5986691 DOI: 10.1186/s40658-018-0212-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Accepted: 04/09/2018] [Indexed: 02/06/2023] Open
Abstract
Background Matched attenuation maps are vital for obtaining accurate and reproducible kinetic and static parameter estimates from PET data. With increased interest in PET/CT imaging of diffuse lung diseases for assessing disease progression and treatment effectiveness, understanding the extent of the effect of respiratory motion and establishing methods for correction are becoming more important. In a previous study, we have shown that using the wrong attenuation map leads to large errors due to density mismatches in the lung, especially in dynamic PET scans. Here, we extend this work to the case where the study is sub-divided into several scans, e.g. for patient comfort, each with its own CT (cine-CT and ‘snap shot’ CT). A method to combine multi-CT information into a combined-CT has then been developed, which averages the CT information from each study section to produce composite CT images with the lung density more representative of that in the PET data. This combined-CT was applied to nine patients with idiopathic pulmonary fibrosis, imaged with dynamic 18F-FDG PET/CT to determine the improvement in the precision of the parameter estimates. Results Using XCAT simulations, errors in the influx rate constant were found to be as high as 60% in multi-PET/CT studies. Analysis of patient data identified displacements between study sections in the time activity curves, which led to an average standard error in the estimates of the influx rate constant of 53% with conventional methods. This reduced to within 5% after use of combined-CTs for attenuation correction of the study sections. Conclusions Use of combined-CTs to reconstruct the sections of a multi-PET/CT study, as opposed to using the individually acquired CTs at each study stage, produces more precise parameter estimates and may improve discrimination between diseased and normal lung.
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Affiliation(s)
- Beverley F Holman
- Institute of Nuclear Medicine, University College London, UCLH (T-5), Euston Road, London, NW1 2BU, UK.
| | - Vesna Cuplov
- Institute of Nuclear Medicine, University College London, UCLH (T-5), Euston Road, London, NW1 2BU, UK
| | - Lynn Millner
- Institute of Nuclear Medicine, University College London, UCLH (T-5), Euston Road, London, NW1 2BU, UK
| | - Raymond Endozo
- Institute of Nuclear Medicine, University College London, UCLH (T-5), Euston Road, London, NW1 2BU, UK
| | - Toby M Maher
- National Institute for Health Research Respiratory Biomedical Research Unit, Royal Brompton Hospital, Sydney St, London, SW3 6NP, UK.,Fibrosis Research Group, Inflammation, Repair and Development Section, NHLI, Sir Alexander Flemming Building, Imperial College London, London, SW7 2AZ, UK
| | - Ashley M Groves
- Institute of Nuclear Medicine, University College London, UCLH (T-5), Euston Road, London, NW1 2BU, UK
| | - Brian F Hutton
- Institute of Nuclear Medicine, University College London, UCLH (T-5), Euston Road, London, NW1 2BU, UK.,Centre for Medical Radiation Physics, University of Wollongong, Wollongong, Australia
| | - Kris Thielemans
- Institute of Nuclear Medicine, University College London, UCLH (T-5), Euston Road, London, NW1 2BU, UK
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Cuplov V, Holman BF, McClelland J, Modat M, Hutton BF, Thielemans K. Issues in quantification of registered respiratory gated PET/CT in the lung. ACTA ACUST UNITED AC 2017; 63:015007. [DOI: 10.1088/1361-6560/aa950b] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Holman BF, Cuplov V, Millner L, Hutton BF, Maher TM, Groves AM, Thielemans K. Improved correction for the tissue fraction effect in lung PET/CT imaging. Phys Med Biol 2015; 60:7387-402. [DOI: 10.1088/0031-9155/60/18/7387] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Sun T, Wu TH, Wang SJ, Yang BH, Wu NY, Mok GSP. Low dose interpolated average CT for thoracic PET/CT attenuation correction using an active breathing controller. Med Phys 2013; 40:102507. [DOI: 10.1118/1.4820976] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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