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Hari Y, Fuchi Y, Yamamoto K, Ito Y. Benzo-Fused 7-Oxabicyclo[2.2.1]heptane-2,3-diol Derivatives as Universal Linkers for Solid-Phase Oligonucleotide Synthesis. SYNTHESIS-STUTTGART 2023. [DOI: 10.1055/s-0042-1751405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
AbstractIn solid-phase oligonucleotide (ON) synthesis, especially for 3′-modified ONs, a universal linker attached to a solid support is widely used. In this study, benzo-fused 7-oxabicyclo[2.2.1]heptane-2,3-diol derivatives are designed, synthesized, and evaluated as universal linkers. The designed linkers show reactivity comparable to that of a conventional universal linker for releasing the desired ONs. Additionally, these materials exhibit a more robust structure under basic conditions, as generally used in ON synthesis, and hydrophobic properties relative to the conventional universal linker. Notably, when diphenyl-substituted (terphenyl) and phenanthrene-type (PT) linkers are used, cyclic phosphodiesters derived from linker units as byproducts, which are produced by release of ONs from the linker units, are detected in the HPLC chromatograms. The PT linker is applicable to various ON syntheses using controlled pore glass (CPG) and polystyrene (PS) resins. These results demonstrate that the PT linker can serve as an alternative to conventional universal linkers.
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Kovalerchik D, Zovko A, Hååg P, Sierakowiak A, Viktorsson K, Lewensohn R, Ilan M, Carmeli S. Cytotoxic Alkylynols of the Sponge Cribrochalina vasculum: Structure, Synthetic Analogs and SAR Studies. Mar Drugs 2022; 20:md20040265. [PMID: 35447938 PMCID: PMC9032987 DOI: 10.3390/md20040265] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 04/11/2022] [Accepted: 04/11/2022] [Indexed: 11/16/2022] Open
Abstract
A series of twenty-three linear and branched chain mono acetylene lipids were isolated from the Caribbean Sea sponge Cribrochalina vasculum. Seventeen of the compounds, 1–17, are new, while six, 18–23, were previously characterized from the same sponge. Some of the new acetylene-3-hydroxy alkanes 1, 6, 7, 8, 10 were tested for selective cytotoxicity in non-small cell lung carcinoma (NSCLC) cells over WI-38 normal diploid lung fibroblasts. Compound 7, presented clear tumor selective activity while, 1 and 8, showed selectivity at lower doses and 6 and 10, were not active towards NSCLC cells at all. The earlier reported selective cytotoxicity of some acetylene-3-hydroxy alkanes (scal-18 and 23), in NSCLC cells and/or other tumor cell types were also confirmed for 19, 20 and 22. To further study the structure activity relationships (SAR) of this group of compounds, we synthesized several derivatives of acetylene-3-hydroxy alkanes, rac-18, scal-S-18, R-18, rac-27, rac-32, R-32, S-32, rac-33, rac-41, rac-42, rac-43, rac-45, rac-48 and rac-49, along with other 3-substituted derivatives, rac-35, rac-36, rac-37, rac-38, rac-39 and rac-40, and assessed their cytotoxic activity against NSCLC cells and diploid fibroblasts. SAR studies revealed that the alcohol moiety at position 3 and its absolute R configuration both were essential for the tumor cell line selective activity while for its cytotoxic magnitude the alkyl chain length and branching were of less significance.
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Affiliation(s)
- Dimitry Kovalerchik
- Raymond and Beverly Sackler Faculty of Exact Sciences, School of Chemistry, Tel Aviv University, Tel Aviv 69978, Israel;
| | - Ana Zovko
- Department of Oncology-Pathology, Karolinska Institute, SE-171 64 Solna, Sweden; (A.Z.); (P.H.); (A.S.); (K.V.); (R.L.)
| | - Petra Hååg
- Department of Oncology-Pathology, Karolinska Institute, SE-171 64 Solna, Sweden; (A.Z.); (P.H.); (A.S.); (K.V.); (R.L.)
| | - Adam Sierakowiak
- Department of Oncology-Pathology, Karolinska Institute, SE-171 64 Solna, Sweden; (A.Z.); (P.H.); (A.S.); (K.V.); (R.L.)
| | - Kristina Viktorsson
- Department of Oncology-Pathology, Karolinska Institute, SE-171 64 Solna, Sweden; (A.Z.); (P.H.); (A.S.); (K.V.); (R.L.)
| | - Rolf Lewensohn
- Department of Oncology-Pathology, Karolinska Institute, SE-171 64 Solna, Sweden; (A.Z.); (P.H.); (A.S.); (K.V.); (R.L.)
- Theme Cancer, Medical Unit Head and Neck, Lung and Skin Tumors, Thoracic Oncology Center, Karolinska University Hospital, SE-171 64 Solna, Sweden
| | - Micha Ilan
- Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel;
| | - Shmuel Carmeli
- Raymond and Beverly Sackler Faculty of Exact Sciences, School of Chemistry, Tel Aviv University, Tel Aviv 69978, Israel;
- Correspondence: ; Tel.: +972-3-6408550
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Das J, Bag SS, Basak A. Mechanistic Studies on Garratt–Braverman Cyclization: The Diradical–Cycloaddition Puzzle. J Org Chem 2016; 81:4623-32. [DOI: 10.1021/acs.joc.6b00490] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Joyee Das
- Department
of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Subhendu Sekhar Bag
- Department
of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India
| | - Amit Basak
- Department
of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
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Das J, Das E, Jana S, Addy PS, Anoop A, Basak A. Shifting the Reactivity of Bis-propargyl Ethers from Garratt–Braverman Cyclization Mode to 1,5-H Shift Pathway To Yield 3,4-Disubstituted Furans: A Combined Experimental and Computational Study. J Org Chem 2015; 81:450-7. [DOI: 10.1021/acs.joc.5b02246] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Joyee Das
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, India
| | - Eshani Das
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, India
| | - Saibal Jana
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, India
| | - Partha Sarathi Addy
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, India
| | - Anakuthil Anoop
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, India
| | - Amit Basak
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, India
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Vizer SA, Sycheva ES, Al Quntar AAA, Kurmankulov NB, Yerzhanov KB, Dembitsky VM. Propargylic sulfides: synthesis, properties, and application. Chem Rev 2014; 115:1475-502. [PMID: 25517232 DOI: 10.1021/cr4001435] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Svetlana A Vizer
- A.B. Bekturov Institute of Chemical Sciences , 106 Sh. Walikhanov Street, Almaty 480100, Republic of Kazakhstan
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Guerrero-Vásquez GA, Chinchilla N, Molinillo JMG, Macías FA. Synthesis of bioactive speciosins G and P from Hexagonia speciosa. JOURNAL OF NATURAL PRODUCTS 2014; 77:2029-2036. [PMID: 25181306 DOI: 10.1021/np500341q] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The first total synthesis of speciosins P and G, previously isolated from Hexagonia speciosa, is reported. These compounds have been synthesized by Sonogashira coupling from readily available starting materials. Siccayne was also synthesized from the same starting material in two steps along with a number of other derivatives. The compounds were tested in the wheat coleoptile bioassay. The most active compound was the intermediate 18, followed by 29 and 17. The structural requirements for activity in these compounds are the presence of methoxy groups in the aromatic ring and a formyl or hydroxy group in the side chain.
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Affiliation(s)
- Guillermo A Guerrero-Vásquez
- Allelopathy Group, Department of Organic Chemistry, School of Sciences, INBIO Institute of Biomolecules, University of Cadiz , C/ República Saharaui, s/n, 11510-Puerto Real, Cádiz, Spain
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Feldman KS, Ngernmeesri P. Total Synthesis of (±)-Dragmacidin E: Problems Solved and Lessons Learned. Synlett 2012; 23:1882-1892. [PMID: 24058268 DOI: 10.1055/s-0031-1290692] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Abstract
(±)-Dragmacidin E was synthesized in 25 steps from commercially available 7-(benzyloxy)indole. Key transformations in this sponge metabolite's preparation include (a) a Witkop cyclization to establish the bridging indole core, (b) cyclo-dehydrative pyrazinone formation to unite the two indole-bearing components, and (c) late-stage guanidine installation via chemoselective carbonyl activation.
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Affiliation(s)
- Ken S Feldman
- Chemistry Department, The Pennsylvania State University, University Park, Pennsylvania USA 16802
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