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Pérez-Bonilla M, Sánchez-Hidalgo M, González I, Oves-Costales D, Martín J, Murillo-Alba J, Tormo JR, Cho A, Byun SY, No JH, Shum D, Ioset JR, Genilloud O, Reyes F. Madurastatins with Imidazolidinone Rings: Natural Products or Side-Reaction Products from Extraction Solvents? Int J Mol Sci 2023; 25:301. [PMID: 38203471 PMCID: PMC10779116 DOI: 10.3390/ijms25010301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 12/21/2023] [Accepted: 12/22/2023] [Indexed: 01/12/2024] Open
Abstract
Madurastatins are a group of pentapeptides containing an oxazoline moiety, and, in a few cases, an imidazolidinone ring as an additional structural feature. In our search for new potential antiparasitic metabolites from natural sources, we studied the acetone extracts from a culture of Actinomadura sp. CA-135719. The LC/HRMS analysis of this extract identified the presence of the known madurastatins C1 (1), D1 (4), and D2 (5) together with additional members of the family that were identified as the new madurastatins H2 (2) and 33-epi-D1 (3) after isolation and spectroscopic analysis. The planar structures of the new compounds were established by HRMS, ESI-qTOF-MS/MS, and 1D and 2D NMR data, and their absolute configuration was proposed using Marfey's and bioinformatic analyses of the biosynthetic gene cluster (BGC). A revision of the absolute configuration of madurastatins D1 and D2 is proposed. Additionally, madurastatins containing imidazolidinone rings are proved to be artifacts originating during acetone extraction of the bacterial cultures.
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Affiliation(s)
- Mercedes Pérez-Bonilla
- Fundación MEDINA, Avda. del Conocimiento 34, 18016 Granada, Spain; (M.S.-H.); (I.G.); (D.O.-C.); (J.M.); (J.M.-A.); (J.R.T.); (O.G.)
| | - Marina Sánchez-Hidalgo
- Fundación MEDINA, Avda. del Conocimiento 34, 18016 Granada, Spain; (M.S.-H.); (I.G.); (D.O.-C.); (J.M.); (J.M.-A.); (J.R.T.); (O.G.)
| | - Ignacio González
- Fundación MEDINA, Avda. del Conocimiento 34, 18016 Granada, Spain; (M.S.-H.); (I.G.); (D.O.-C.); (J.M.); (J.M.-A.); (J.R.T.); (O.G.)
| | - Daniel Oves-Costales
- Fundación MEDINA, Avda. del Conocimiento 34, 18016 Granada, Spain; (M.S.-H.); (I.G.); (D.O.-C.); (J.M.); (J.M.-A.); (J.R.T.); (O.G.)
| | - Jesús Martín
- Fundación MEDINA, Avda. del Conocimiento 34, 18016 Granada, Spain; (M.S.-H.); (I.G.); (D.O.-C.); (J.M.); (J.M.-A.); (J.R.T.); (O.G.)
| | - José Murillo-Alba
- Fundación MEDINA, Avda. del Conocimiento 34, 18016 Granada, Spain; (M.S.-H.); (I.G.); (D.O.-C.); (J.M.); (J.M.-A.); (J.R.T.); (O.G.)
| | - José R. Tormo
- Fundación MEDINA, Avda. del Conocimiento 34, 18016 Granada, Spain; (M.S.-H.); (I.G.); (D.O.-C.); (J.M.); (J.M.-A.); (J.R.T.); (O.G.)
| | - Ahreum Cho
- Institut Pasteur Korea, 16, Daewangpangyo-ro 712 beon-gil, Bundang-gu, Seongnam-si 13488, Gyeonggi-do, Republic of Korea; (A.C.); (S.-Y.B.); (J.-H.N.); (D.S.)
| | - Soo-Young Byun
- Institut Pasteur Korea, 16, Daewangpangyo-ro 712 beon-gil, Bundang-gu, Seongnam-si 13488, Gyeonggi-do, Republic of Korea; (A.C.); (S.-Y.B.); (J.-H.N.); (D.S.)
| | - Joo-Hwan No
- Institut Pasteur Korea, 16, Daewangpangyo-ro 712 beon-gil, Bundang-gu, Seongnam-si 13488, Gyeonggi-do, Republic of Korea; (A.C.); (S.-Y.B.); (J.-H.N.); (D.S.)
| | - David Shum
- Institut Pasteur Korea, 16, Daewangpangyo-ro 712 beon-gil, Bundang-gu, Seongnam-si 13488, Gyeonggi-do, Republic of Korea; (A.C.); (S.-Y.B.); (J.-H.N.); (D.S.)
| | - Jean-Robert Ioset
- Drugs for Neglected Diseases Initiative, 15 Chemin Camille-Vidart, 1202 Geneva, Switzerland;
| | - Olga Genilloud
- Fundación MEDINA, Avda. del Conocimiento 34, 18016 Granada, Spain; (M.S.-H.); (I.G.); (D.O.-C.); (J.M.); (J.M.-A.); (J.R.T.); (O.G.)
| | - Fernando Reyes
- Fundación MEDINA, Avda. del Conocimiento 34, 18016 Granada, Spain; (M.S.-H.); (I.G.); (D.O.-C.); (J.M.); (J.M.-A.); (J.R.T.); (O.G.)
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Kamińska K, Mular A, Olshvang E, Nolte NM, Kozłowski H, Wojaczyńska E, Gumienna-Kontecka E. The diversity and utility of arylthiazoline and aryloxazoline siderophores: challenges of total synthesis. RSC Adv 2022; 12:25284-25322. [PMID: 36199325 PMCID: PMC9450019 DOI: 10.1039/d2ra03841b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 08/18/2022] [Indexed: 11/21/2022] Open
Abstract
Siderophores are unique ferric ion chelators produced and secreted by some organisms like bacteria, fungi and plants under iron deficiency conditions. These molecules possess immense affinity and specificity for Fe3+ and other metal ions, which attracts great interest due to the numerous possibilities of application, including antibiotics delivery to resistant bacteria strains. Total synthesis of siderophores is a must since the compounds are present in natural sources at extremely small concentrations. These molecules are extremely diverse in terms of molecular structure and physical and chemical properties. This review is focused on achievements and developments in the total synthesis strategies of naturally occurring siderophores bearing arylthiazoline and aryloxazoline units. A review presents advances in total synthesis of thiazoline and oxazoline-bearing siderophores, unique ferric ion chelators found in some bacteria, fungi and plants.![]()
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Affiliation(s)
- Karolina Kamińska
- Faculty of Chemistry, University of Wrocław, Fryderyka Joliot-Curie 14, 50-383 Wrocław, Poland
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Andrzej Mular
- Faculty of Chemistry, University of Wrocław, Fryderyka Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Evgenia Olshvang
- Inorganic Chemistry I-Bioinorganic Chemistry, Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitaetsstrasse, 44801 Bochum, Germany
| | - Nils Metzler Nolte
- Inorganic Chemistry I-Bioinorganic Chemistry, Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitaetsstrasse, 44801 Bochum, Germany
| | - Henryk Kozłowski
- Faculty of Chemistry, University of Wrocław, Fryderyka Joliot-Curie 14, 50-383 Wrocław, Poland
- Department of Health Sciences, University of Opole, Katowicka 68, 45-060 Opole, Poland
| | - Elżbieta Wojaczyńska
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
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Zhang W, Wei S, Wu W. Preliminary studies on the antibacterial mechanism of Yanglingmycin. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2018; 147:27-31. [PMID: 29933988 DOI: 10.1016/j.pestbp.2017.05.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Accepted: 05/31/2017] [Indexed: 06/08/2023]
Abstract
The antibacterial mechanism of Yanglingmycin, a new dihydrooxazole antibiotic, was preliminarily investigated by symptomatology observation and physical and biochemical analysis. The electron microscopy observation exhibited that the bacterial cell became elongated, appeared breakage or even cavities on the cell surface after treated with Yanglingmycin. The content of reducing sugar and the activity levels of alanine transaminase and aspartate transaminase in treated group had a significant increase compared to control group. These results indicated that the integrity of bacteria cell membrane was damaged by the antibiotic. Furthermore, the activity of Accase and carboxyltransferase could be effectively inhibited by Yanglingmycin. Meanwhile, the addition of exogenous fatty acid resulted in the decrease or even loss of the antibacterial activity of Yanglingmycin. These findings implied that Yanglingmycin might take effect by inhibiting the activity of Accase, which resulted in the blockade of fatty acids and lipids biosynthesis.
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Affiliation(s)
- Wenjuan Zhang
- Shaanxi Province Key Laboratory of Research and Development of Botanic Pesticide, Northwest A&F University, Yangling, Shaanxi, PR China; Department of Nursing, Weinan Vocation and Technical College, Weinan, Shaanxi, PR China
| | - Shaopeng Wei
- Shaanxi Province Key Laboratory of Research and Development of Botanic Pesticide, Northwest A&F University, Yangling, Shaanxi, PR China
| | - Wenjun Wu
- Shaanxi Province Key Laboratory of Research and Development of Botanic Pesticide, Northwest A&F University, Yangling, Shaanxi, PR China.
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Efficient Synthesis and Antibacterial Evaluation of (±)-Yanglingmycin and Its Analogues. Molecules 2016; 21:96. [PMID: 26784161 PMCID: PMC6273348 DOI: 10.3390/molecules21010096] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2015] [Revised: 12/30/2015] [Accepted: 01/12/2016] [Indexed: 12/31/2022] Open
Abstract
An efficient synthetic route was developed for the large-scale preparation of (±)-Yanglingmycin and its analogues. Three series of derivatives of (±)-Yanglingmycin were synthesized and the structures of all compounds were elucidated by analyses of NMR and ESI-MS spectra data. Moreover, their antibacterial activities against seven species of bacteria were systematically evaluated by the micro-broth dilution method, most of which displayed considerable activity. It was worth noting that compounds 5b, 5c, 5d, 6g, and 7 were found to be the most promising leading candidates, with peak MIC values of 0.98 μg·mL−1 for Bacillus subtilis, which is superior to positive controls (MIC = 3.91 μg·mL−1). The above results might lay the firm foundation for the design and synthesis of novel antibacterial drugs based on (±)-Yanglingmycin.
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Design and Synthesis of New 2-Aryl-4,5-Dihydro-thiazole Analogues: In Vitro Antibacterial Activities and Preliminary Mechanism of Action. Molecules 2015; 20:20118-30. [PMID: 26569197 PMCID: PMC6331989 DOI: 10.3390/molecules201119680] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Revised: 10/27/2015] [Accepted: 11/02/2015] [Indexed: 12/02/2022] Open
Abstract
Sixty 2-aryl-4,5-dihydrothiazoles were designed and synthesized in yields ranging from 64% to 89% from cysteine and substituted-benzonitriles via a novel metal- and catalyst-free method. The structures of the title compounds were confirmed mainly by NMR spectral data analysis. Antibacterial activity assays showed that the compounds (S)-2-(2′-hydroxyphenyl)-4-hydroxy-methyl-4,5-dihydrothiazole (7h) and (R)-2-(2′-hydroxyphenyl)-4-hydroxymethyl-4,5-dihydro-thiazole (7h′) exhibited significant inhibition against Ralstonia solanacearum, Pseudomonas syringae pv. actinidiae, Bacillus subtilis and Bacillus cereus, with minimum inhibitory concentrations (MICs) ranging from 3.91 to 31.24 μg·mL−1. The effect of substituents showed that not only electron-withdrawing groups, but also electron-donating groups could abolish the antibacterial activities unless a 2′-hydroxy group was introduced on the 2-aryl substituent of the 4,5-dihydrothiazole analogues. The results of scanning electron microscope (SEM) and fatty acid exposure experiments indicated that these antibacterial compounds influence fatty acid synthesis in the tested bacteria.
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Li LB, Dan WJ, Tan FF, Cui LH, Yuan ZP, Wu WJ, Zhang JW. Synthesis and antibacterial activities of Yanglingmycin analogues. Chem Pharm Bull (Tokyo) 2014; 63:33-7. [PMID: 25743192 DOI: 10.1248/cpb.c14-00578] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The synthesis of Yanglingmycin and its enantiomer, along with eighteen Yanglingmycin analogues is reported. The structures were confirmed mainly by analyses of NMR spectral data. Antibacterial activity assays showed that Yanglingmycin and some of its analogues exhibited significant antibacterial activities against two important agricultural pathogenic bacteria, Ralstonia solanacearum and Pseudomonas syringae pv. actinidiae, with minimum inhibitory concentration (MIC) values ranging from 3.91 to 15.62 µg/mL. The antibacterial activities exhibited by Yanglingmycin and its analogues are promising, suggesting potential in the development of compounds for novel bactericides.
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Affiliation(s)
- Long-Bo Li
- College of Sciences, Northwest A & F University; Yangling, Shaanxi Province 712100, P. R. China; Shaanxi Province Key Laboratory of Research and Development of Botanic Pesticide, Yangling, Shaanxi Province, China
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