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Tan DX, Han FS. The application of C–H bond functionalization in the total syntheses of indole natural products. Org Chem Front 2022. [DOI: 10.1039/d1qo01636a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The recent advances in total synthesis of indole natural products focusing on the application of C–H bond functionalization are summarized.
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Affiliation(s)
- Dong-Xing Tan
- CAS Key Lab of High-Performance Synthetic Rubber and its Composite Materials, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, 5625 Renmin Street, Changchun, Jilin 130022, China
| | - Fu-She Han
- CAS Key Lab of High-Performance Synthetic Rubber and its Composite Materials, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, 5625 Renmin Street, Changchun, Jilin 130022, China
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2
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Renata H. Exploration of Iron- and a-Ketoglutarate-Dependent Dioxygenases as Practical Biocatalysts in Natural Product Synthesis. Synlett 2021; 32:775-784. [PMID: 34413574 PMCID: PMC8372184 DOI: 10.1055/s-0040-1707320] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Catalytic C─H oxidation is a powerful transformation with enormous promise to streamline access to complex molecules. In recent years, biocatalytic C─H oxidation strategies have received tremendous attention due to their potential to address unmet regio- and stereoselectivity challenges that are often encountered with the use of small-molecule-based catalysts. This Account provides an overview of recent contributions from our laboratory in this area, specifically in the use of iron- and α-ketoglutarate-dependent dioxygenases in the chemoenzymatic synthesis of complex natural products.
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Affiliation(s)
- Hans Renata
- Department of Chemistry, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL, 33458, USA
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3
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Ordóñez M, Torres-Hernández F, Viveros-Ceballos JL. Highly Diastereoselective Synthesis of Cyclic α-Aminophosphonic and α-Aminophosphinic Acids from Glycyl-l
-Proline 2,5-Diketopiperazine. European J Org Chem 2019. [DOI: 10.1002/ejoc.201901439] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Mario Ordóñez
- Centro de Investigaciones Químicas IICBA; Universidad Autónoma del Estado de Morelos; Av. Universidad 1001 62209 Cuernavaca Morelos Mexico
| | - Fernando Torres-Hernández
- Centro de Investigaciones Químicas IICBA; Universidad Autónoma del Estado de Morelos; Av. Universidad 1001 62209 Cuernavaca Morelos Mexico
| | - José Luis Viveros-Ceballos
- Centro de Investigaciones Químicas IICBA; Universidad Autónoma del Estado de Morelos; Av. Universidad 1001 62209 Cuernavaca Morelos Mexico
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4
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Miley GP, Rote JC, Silverman RB, Kelleher NL, Thomson RJ. Total Synthesis of Tambromycin Enabled by Indole C-H Functionalization. Org Lett 2018; 20:2369-2373. [PMID: 29584440 DOI: 10.1021/acs.orglett.8b00700] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The total synthesis of tambromycin (1), a recently isolated tetrapeptide, is reported. This unusual natural product possesses a highly modified tryptophan-derived indole fragment fused to an α-methylserine-derived oxazoline ring, and a unique noncanonical amino acid residue named tambroline (11). A convergent synthesis of tambromycin was achieved by a 13-step route that leveraged recent developments in the field of C-H functionalization to prepare the complex indole fragment, as well as an efficient synthesis of tambroline that featured a diastereoselective amination of homoproline.
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5
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Zhang X, King-Smith E, Renata H. Total Synthesis of Tambromycin by Combining Chemocatalytic and Biocatalytic C−H Functionalization. Angew Chem Int Ed Engl 2018; 57:5037-5041. [DOI: 10.1002/anie.201801165] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2018] [Indexed: 12/21/2022]
Affiliation(s)
- Xiao Zhang
- Department of Chemistry; The Scripps Research Institute; 130 Scripps Way Jupiter FL 33458 USA
| | - Emma King-Smith
- Department of Chemistry; The Scripps Research Institute; 130 Scripps Way Jupiter FL 33458 USA
| | - Hans Renata
- Department of Chemistry; The Scripps Research Institute; 130 Scripps Way Jupiter FL 33458 USA
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6
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Zhang X, King-Smith E, Renata H. Total Synthesis of Tambromycin by Combining Chemocatalytic and Biocatalytic C−H Functionalization. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201801165] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Xiao Zhang
- Department of Chemistry; The Scripps Research Institute; 130 Scripps Way Jupiter FL 33458 USA
| | - Emma King-Smith
- Department of Chemistry; The Scripps Research Institute; 130 Scripps Way Jupiter FL 33458 USA
| | - Hans Renata
- Department of Chemistry; The Scripps Research Institute; 130 Scripps Way Jupiter FL 33458 USA
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7
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Stereoselective reactions of nitro compounds in the synthesis of natural compound analogs and active pharmaceutical ingredients. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.07.067] [Citation(s) in RCA: 95] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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8
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Izumikawa M, Kawahara T, Kagaya N, Yamamura H, Hayakawa M, Takagi M, Yoshida M, Doi T, Shin-ya K. Pyrrolidine-containing peptides, JBIR-126, -148, and -149, from Streptomyces sp. NBRC 111228. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.07.080] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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9
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Steffan T, Renukappa-Gutke T, Höfner G, Wanner KT. Design, synthesis and SAR studies of GABA uptake inhibitors derived from 2-substituted pyrrolidine-2-yl-acetic acids. Bioorg Med Chem 2015; 23:1284-306. [PMID: 25698617 DOI: 10.1016/j.bmc.2015.01.035] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2014] [Revised: 01/20/2015] [Accepted: 01/21/2015] [Indexed: 12/21/2022]
Abstract
In this paper, we disclose the design and synthesis of a series of 2-substituted pyrrolidine-2-yl-acetic acid as core structures and the N-arylalkyl derivatives thereof as potential GABA transport inhibitors. The 2-position in the side chain of pyrrolidine-2-yl-acetic acid derivatives was substituted with alkyl, hydroxy and amino groups to modulate the activity and selectivity to mGAT1 and mGAT4 proteins. SAR studies of the compounds performed for the four mouse GABA transporter proteins (mGAT1-mGAT4) implied significant potencies and subtype selectivities for 2-hydroxy-2-pyrrolidine-2-yl-acetic acid derivatives. The racemate rac-(u)-13c exhibited the highest potency (pIC50 5.67) at and selectivity for mGAT1 in GABA uptake assays. In fact, the potency of rac-(u)-13c at hGAT-1 (pIC50 6.14) was even higher than its potency at mGAT1. These uptake results for rac-(u)-13c are in line with the binding affinities to the aforesaid proteins mGAT1 (pKi 6.99) and hGAT-1 (pKi 7.18) determined by MS Binding Assay based on NO711 as marker quantified by LC-ESI-MS-MS analysis. Interestingly, the 2-hydroxy-2-pyrrolidine-2-yl-acetic acid rac-(u)-13d containing 2-{[tris(4-methoxyphenyl)]methoxy} ethyl group at the nitrogen atom of the pyrrolidine ring showed high potency at mGAT4 and a comparatively better selectivity for this protein (>15 against mGAT3) than the well known mGAT4 uptake inhibitor (S)-SNAP-5114.
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Affiliation(s)
- Tobias Steffan
- Department für Pharmazie-Zentrum für Pharmaforschung, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, D-81377 Munich, Germany
| | - Thejavathi Renukappa-Gutke
- Department für Pharmazie-Zentrum für Pharmaforschung, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, D-81377 Munich, Germany
| | - Georg Höfner
- Department für Pharmazie-Zentrum für Pharmaforschung, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, D-81377 Munich, Germany
| | - Klaus T Wanner
- Department für Pharmazie-Zentrum für Pharmaforschung, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, D-81377 Munich, Germany.
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10
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Bolchi C, Valoti E, Binda M, Fasoli F, Ferrara R, Fumagalli L, Gotti C, Matucci R, Vistoli G, Pallavicini M. Design, synthesis and binding affinity of acetylcholine carbamoyl analogues. Bioorg Med Chem Lett 2013; 23:6481-5. [DOI: 10.1016/j.bmcl.2013.09.023] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2013] [Revised: 09/03/2013] [Accepted: 09/06/2013] [Indexed: 02/02/2023]
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11
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Viso A, Fernández de la Pradilla R, Tortosa M, García A, Flores A. Update 1 of: α,β-Diamino Acids: Biological Significance and Synthetic Approaches. Chem Rev 2011; 111:PR1-42. [DOI: 10.1021/cr100127y] [Citation(s) in RCA: 85] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Alma Viso
- Instituto de Química Orgánica, CSIC, Juan de la Cierva 3, E-28006 Madrid, Spain
| | | | - Mariola Tortosa
- Instituto de Química Orgánica, CSIC, Juan de la Cierva 3, E-28006 Madrid, Spain
| | - Ana García
- Instituto de Química Orgánica, CSIC, Juan de la Cierva 3, E-28006 Madrid, Spain
| | - Aida Flores
- Instituto de Química Orgánica, CSIC, Juan de la Cierva 3, E-28006 Madrid, Spain
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12
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Ranatunga S, Liyanage W, Del Valle JR. Synthesis and conformational analysis of bicyclic extended dipeptide surrogates. J Org Chem 2010; 75:5113-25. [PMID: 20593836 PMCID: PMC2914495 DOI: 10.1021/jo1008433] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Regio- and diastereoselective reactions of a homoproline enolate enable the synthesis of novel extended dipeptide surrogates. Bicyclic carbamate 9 and fused beta-lactam scaffold 11 were prepared from L-pyroglutamic acid via substrate-controlled electrophilic azidation. Synthesis of orthogonally protected hexahydropyrrolizine, hexahydropyrrolizinone, and hexahydropyrroloazepinone dipeptide surrogates relied on allylation of proline derivative 5, followed by Curtius rearrangement to introduce the N-terminal carbamate group. A total of six azabicycloalkane derivatives were evaluated for conformational mimicry of extended dipeptides by a combination of X-ray diffraction and molecular modeling. Analysis of putative backbone dihedral angles and N- to C-terminal dipeptide distances indicate that compounds (alpha'S)-14b and 21 approximate the conformation of dipeptides found in beta-sheets, while tripeptide mimic 28 is also highly extended in the solid state. Structural data suggest that ring size and relative stereochemistry have a profound effect on the ability of these scaffolds to act as beta-strand mimetics and should inform the design of related conformational probes.
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13
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Fournier AM, Brown RA, Farnaby W, Miyatake-Ondozabal H, Clayden J. Synthesis of (−)-(S,S)-clemastine by Invertive N → C Aryl Migration in a Lithiated Carbamate. Org Lett 2010; 12:2222-5. [DOI: 10.1021/ol100627c] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Anne M. Fournier
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, U.K
| | - Robert A. Brown
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, U.K
| | - William Farnaby
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, U.K
| | | | - Jonathan Clayden
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, U.K
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14
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Bandyopadhyay A, Pahari AK, Chattopadhyay SK. A stereodivergent route to two epimeric 2-pyrrolidinylglycine derivatives. Tetrahedron Lett 2009. [DOI: 10.1016/j.tetlet.2009.08.030] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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15
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A new and general route to 2-pyrrolylglycine, 2-pyrrolylalanine and homo-2-pyrrolylalanine derivatives. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.tetasy.2009.06.021] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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16
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Stereoselective synthesis of 2-azetidinylglycine and aminopyrrolidone derivatives from Garner’s aldehyde. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.tetasy.2009.04.010] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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17
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Liyanage W, Weerasinghe L, Strong RK, Del Valle JR. Synthesis of carbapyochelins via diastereoselective azidation of 5-(ethoxycarbonyl)methylproline derivatives. J Org Chem 2008; 73:7420-3. [PMID: 18698823 DOI: 10.1021/jo801294p] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Two configurationally stable carbon-based analogues of pyochelin have been prepared from Boc-pyroglutamic acid-tert-butyl ester in 11 and 13 steps. Introduction of the amino group was achieved by a highly diastereoselective electrophilic azidation reaction to afford novel bis-alpha-amino acid proline derivatives.
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Affiliation(s)
- Wathsala Liyanage
- Department of Chemistry and Biochemistry, New Mexico State University, MSC3C, Las Cruces, New Mexico 88003, USA
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18
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Chattopadhyay SK, Sarkar K, Thander L, Roy SP. A stereodivergent route to epimeric 2-piperidinylglycines: application to the synthesis of carbocyclic β-lactam derivatives. Tetrahedron Lett 2007. [DOI: 10.1016/j.tetlet.2007.06.148] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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19
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Merino P, Pádár P, Delso I, Thirumalaikumar M, Tejero T, Kovács L. Stereoselective synthesis of pyrrolidinyl glycines from nitrones: complementarity of nucleophilic addition and 1,3-dipolar cycloaddition. Tetrahedron Lett 2006. [DOI: 10.1016/j.tetlet.2006.05.114] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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20
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Viso A, Fernández de la Pradilla R, García A, Flores A. α,β-Diamino Acids: Biological Significance and Synthetic Approaches. Chem Rev 2005; 105:3167-96. [PMID: 16092828 DOI: 10.1021/cr0406561] [Citation(s) in RCA: 239] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alma Viso
- Instituto de Química Orgánica, CSIC, Juan de la Cierva 3, E-28006 Madrid, Spain.
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21
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Foresti E, Palmieri G, Petrini M, Profeta R. Highly diastereoselective addition of nitromethane anion to chiral α-amidoalkylphenyl sulfones. Synthesis of optically active α-amino acid derivatives. Org Biomol Chem 2003; 1:4275-81. [PMID: 14685331 DOI: 10.1039/b309211a] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Optically active syn-alpha-amidoalkylphenyl sulfones can be prepared from chiral aldehydes in anhydrous conditions using benzenesulfinic acid. These sulfones in basic conditions give N-acylimines that react with sodium methanenitronate to afford the corresponding nitro adducts with high anti diastereoselectivity. PM3 semiempirical calculations provide a rationale for the observed opposite stereoselectivity. The obtained nitro derivatives undergo a Nef reaction followed by a methylation giving optically active beta-hydroxy-alpha-amino acid and alpha,beta-diamino acid esters in good yield. These amino acid derivatives are important building blocks for the preparation of biologically active compounds.
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Affiliation(s)
- Elisabetta Foresti
- Dipartimento di Chimica G. Ciamician, Università di Bologna, via Selmi, 2. 1-40126 Bologna, Italy
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