1
|
Gupta S, de Rink R, Klok JBM, Muyzer G, Plugge CM. Process conditions affect microbial diversity and activity in a haloalkaline biodesulfurization system. Appl Environ Microbiol 2024; 90:e0186423. [PMID: 38078763 PMCID: PMC10807427 DOI: 10.1128/aem.01864-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 10/30/2023] [Indexed: 01/25/2024] Open
Abstract
Biodesulfurization (BD) systems that treat sour gas employ mixtures of haloalkaliphilic sulfur-oxidizing bacteria to convert sulfide to elemental sulfur. In the past years, these systems have seen major technical innovations that have led to changes in microbial community composition. Different studies have identified and discussed the microbial communities in both traditional and improved systems. However, these studies do not identify metabolically active community members and merely focus on members' presence/absence. Therefore, their results cannot confirm the activity and role of certain bacteria in the BD system. To investigate the active community members, we determined the microbial communities of six different runs of a pilot-scale BD system. 16S rRNA gene-based amplicon sequencing was performed using both DNA and RNA. A comparison of the DNA- and RNA-based sequencing results identified the active microbes in the BD system. Statistical analyses indicated that not all the existing microbes were actively involved in the system and that microbial communities continuously evolved during the operation. At the end of the run, strains affiliated with Alkalilimnicola ehrlichii and Thioalkalivibrio sulfidiphilus were confirmed as the most active key bacteria in the BD system. This study determined that microbial communities were shaped predominantly by the combination of hydraulic retention time (HRT) and sulfide concentration in the anoxic reactor and, to a lesser extent, by other operational parameters.IMPORTANCEHaloalkaliphilic sulfur-oxidizing bacteria are integral to biodesulfurization (BD) systems and are responsible for converting sulfide to sulfur. To understand the cause of conversions occurring in the BD systems, knowing which bacteria are present and active in the systems is essential. So far, only a few studies have investigated the BD system's microbial composition, but none have identified the active microbial community. Here, we reveal the metabolically active community, their succession, and their influence on product formation.
Collapse
Affiliation(s)
- Suyash Gupta
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Leeuwarden, the Netherlands
- Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Rieks de Rink
- Environmental Technology, Wageningen University & Research, Wageningen, the Netherlands
- Paqell B.V., Utrecht, the Netherlands
| | - Johannes B. M. Klok
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Leeuwarden, the Netherlands
| | - Gerard Muyzer
- Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Caroline M. Plugge
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Leeuwarden, the Netherlands
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, the Netherlands
| |
Collapse
|
2
|
Zhang J, Li X, Qian A, Xu X, Lv Y, Zhou X, Yang X, Zhu W, Zhang H, Ding Y. Effects of operating conditions on the in situ control of sulfur-containing odors by using a novel alternative landfill cover and its transformation mechanism. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:7959-7976. [PMID: 38175505 DOI: 10.1007/s11356-023-31721-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 12/21/2023] [Indexed: 01/05/2024]
Abstract
Sulfur-containing gases are main sources of landfill odors, which has become a big issue for pollution to environment and human health. Biocover is promising for treating landfill odors, with advantages of durability and environmental friendliness. In this study, charcoal sludge compost was utilized as the main effective component of a novel alternative landfill cover and the in situ control of sulfur-containing odors from municipal solid waste landfilling process was simulated under nine different operating conditions. Results showed that five sulfur-containing odors (hydrogen sulfide, H2S; methyl mercaptan, CH3SH; dimethyl sulfide, CH3SCH3; ethylmercaptan, CH3CH2SH; carbon disulfide, CS2) were monitored and removed by the biocover, with the highest removal efficiencies of 77.18% for H2S, 87.36% for CH3SH, and 92.19% for CH3SCH3 in reactor 8#, and 95.94% for CH3CH2SH and 94.44% for CS2 in reactor 3#. The orthogonal experiment showed that the factors influencing the removal efficiencies of sulfur-containing odors were ranked from high to low as follows: temperature > weight ratio > humidity content. The combination of parameters of 20% weight ratio, 25°C temperature, and 30% water content was more recommended based on the consideration of the removal efficiencies and economic benefits. The mechanisms of sulfur conversion inside biocover were analyzed. Most organic sulfur was firstly degraded to reduced sulfides or element sulfur, and then oxidized to sulfate which could be stable in the layer as the final state. In this process, sulfur-oxidizing bacteria play a great role, and the distribution of them in reactor 1#, 5#, and 8# was specifically monitored. Bradyrhizobiaceae and Rhodospirillaceae were the dominant species which can utilize sulfide as substance to produce sulfate and element sulfur, respectively. Based on the results of OUTs, the biodiversity of these sulfur-oxidizing bacteria, these microorganisms, was demonstrated to be affected by the different parameters. These results indicate that the novel alternative landfill cover modified with bamboo charcoal compost is effective in removing sulfur odors from landfills. Meanwhile, the findings have direct implications for addressing landfill odor problems through parameter adjustment.
Collapse
Affiliation(s)
- Jiayi Zhang
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China
| | - Xiaowen Li
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China
| | - Aiai Qian
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China
| | - Xianwen Xu
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China
| | - Ya Lv
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China
| | - Xinrong Zhou
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China
| | - Xinrui Yang
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China
| | - Weiqin Zhu
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China
| | - Hangjun Zhang
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China
| | - Ying Ding
- Department of Environmental Science and Engineering, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China.
| |
Collapse
|
3
|
Johnston KKY, van Lankveld M, de Rink R, Roman P, Klok JBM, Mol AR, Keesman KJ, Buisman CJN. Polysulfide Concentration and Chain Length in the Biological Desulfurization Process: Effect of Biomass Concentration and the Sulfide Loading Rate. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:13530-13540. [PMID: 37639370 PMCID: PMC10501124 DOI: 10.1021/acs.est.3c03017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 08/11/2023] [Accepted: 08/11/2023] [Indexed: 08/31/2023]
Abstract
Removal of hydrogen sulfide (H2S) can be achieved using the sustainable biological desulfurization process, where H2S is converted to elemental sulfur using sulfide-oxidizing bacteria (SOB). A dual-bioreactor process was recently developed where an anaerobic (sulfidic) bioreactor was used between the absorber column and micro-oxic bioreactor. In the absorber column and sulfidic bioreactor, polysulfides (Sx2-) are formed due to the chemical equilibrium between H2S and sulfur (S8). Sx2- is thought to be the intermediate for SOB to produce sulfur via H2S oxidation. In this study, we quantify Sx2-, determine their chain-length distribution under high H2S loading rates, and elucidate the relationship between biomass and the observed biological removal of sulfides under anaerobic conditions. A linear relationship was observed between Sx2- concentration and H2S loading rates at a constant biomass concentration. Increasing biomass concentrations resulted in a lower measured Sx2- concentration at similar H2S loading rates in the sulfidic bioreactor. Sx2- of chain length 6 (S62-) showed a substantial decrease at higher biomass concentrations. Identifying Sx2- concentrations and their chain lengths as a function of biomass concentration and the sulfide loading rate is key in understanding and controlling sulfide uptake by the SOB. This knowledge will contribute to a better understanding of how to reach and maintain a high selectivity for S8 formation in the dual-reactor biological desulfurization process.
Collapse
Affiliation(s)
- Kestral
A. K. Y. Johnston
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700
AA Wageningen, The
Netherlands
- Wetsus,
European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 AD Leeuwarden, The Netherlands
| | - Mark van Lankveld
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700
AA Wageningen, The
Netherlands
- Paqell
B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
| | - Rieks de Rink
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700
AA Wageningen, The
Netherlands
- Paqell
B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
| | - Pawel Roman
- Wetsus,
European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 AD Leeuwarden, The Netherlands
| | - Johannes B. M. Klok
- Wetsus,
European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 AD Leeuwarden, The Netherlands
| | - Annemerel R. Mol
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700
AA Wageningen, The
Netherlands
| | - Karel J. Keesman
- Wetsus,
European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 AD Leeuwarden, The Netherlands
- Mathematical
and Statistical Methods − Biometris, Wageningen University & Research, P.O. Box 16, 6700 AA Wageningen, The Netherlands
| | - Cees J. N. Buisman
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700
AA Wageningen, The
Netherlands
- Wetsus,
European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 AD Leeuwarden, The Netherlands
| |
Collapse
|
4
|
Hu X, Yang H, Fang X, Shi T, Tan K. Recovery of bio‑sulfur and metal resources from mine wastewater by sulfide biological oxidation-alkali flocculation: A pilot-scale study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 876:162546. [PMID: 36870505 DOI: 10.1016/j.scitotenv.2023.162546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Revised: 02/21/2023] [Accepted: 02/25/2023] [Indexed: 06/18/2023]
Abstract
Mine wastewater treatment using bio-sulfate reduction technology forms sulfur-containing wastewater that comprises sulfides (HS- and S2-) and metal ions. Bio‑sulfur generated by sulfur-oxidizing bacteria in such wastewater is usually negatively charged hydrocolloidal particles. However, bio‑sulfur and metal resource recovery are difficult using traditional methods. In this study, the sulfide biological oxidation-alkali flocculation (SBO-AF) method was investigated to recover the above resources, and to provide a technical reference for mine wastewater resource recovery and heavy metal pollution control. Specifically, the performance of SBO in forming bio‑sulfur and the key parameters of SBO-AF were explored and then applied in a pilot-scale process to recover resources from wastewater. Results show that partial sulfide oxidation was achieved under a sulfide loading rate of 5.08 ± 0.39 kg/m3·d, dissolved oxygen of 2.9-3.5 mg/L and temperature of 27-30 °C. The average sulfide oxidation rate and sulfur selectivity ratio were 92.86 % and 90.22 %, respectively. At pH 10, metal hydroxide and bio‑sulfur colloids co-precipitated through the precipitation catching and adsorption charge neutralization effect. The average manganese, magnesium and aluminum concentrations and turbidity in the wastewater were 53.93 mg/L, 522.97 mg/L, 34.20 mg/L and 505 NTU, respectively, and decreased to 0.49 mg/L, 80.65 mg/L, 1.00 mg/L and 23.33 NTU, respectively, after treatment. The recovered precipitate mainly contained sulfur, along with metal hydroxides. The average sulfur, manganese, magnesium and aluminum contents were 45.6 %, 29.5 %, 15.1 % and 6.5 %, respectively. Economic feasibility analysis and the above results show that SBO-AF has obvious technical and economic advantages in the recovery resources from mine wastewater.
Collapse
Affiliation(s)
- Xin Hu
- Key Laboratory of Beijing for Water Quality Science and Water Environmental Recovery Engineering, Beijing University of Technology, Beijing 100124, China
| | - Hong Yang
- Key Laboratory of Beijing for Water Quality Science and Water Environmental Recovery Engineering, Beijing University of Technology, Beijing 100124, China.
| | - Xiaoyue Fang
- Beijing General Municipal Engineering Design & Research Institute Co.,Ltd, Beijing 100044, China
| | - Tongyu Shi
- Key Laboratory of Beijing for Water Quality Science and Water Environmental Recovery Engineering, Beijing University of Technology, Beijing 100124, China
| | - Keyan Tan
- Key Laboratory of Eco-Geochemistry, National Research Center for Geoanalysis, Ministry of Natural Resources, Beijing 100037, China
| |
Collapse
|
5
|
Linssen R, Slinkert T, Buisman CJN, Klok JBM, Ter Heijne A. Anaerobic sulphide removal by haloalkaline sulphide oxidising bacteria. BIORESOURCE TECHNOLOGY 2023; 369:128435. [PMID: 36481375 DOI: 10.1016/j.biortech.2022.128435] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 11/23/2022] [Accepted: 11/30/2022] [Indexed: 06/17/2023]
Abstract
Sulphide is a toxic and corrosive compound and requires removal from waste streams. Recent discoveries show that sulphide oxidising bacteria (SOB) from modern desulphurisation plants are able to spatially separate sulphide removal and oxygen reduction when exposed to intermittent anaerobic and aerobic environments. Here, SOB act as electron shuttles between electron donor and acceptor. The underlying mechanisms for electron shuttling are of yet unknown. To investigate the anaerobic sulphide removal of SOB, batch experiments and mathematical models were applied. The sulphide removal capacity decreased at increasing biomass concentrations. At 0.6 mgN/L SOB could remove up to 8 mgS/mgN in 30 min. It was found that biological activity determines sulphide removal, alongside chemical processes. Anaerobic oxidation of electron carriers was determined to only explain 0.1% of charge storage, where irreversible cleavage of long chain polysulphides could explain full sulphide storage. Different sulphide removal and intracellular storage processes are postulated.
Collapse
Affiliation(s)
- Rikke Linssen
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands
| | - Thomas Slinkert
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands
| | - Cees J N Buisman
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, Leeuwarden, The Netherlands
| | - Johannes B M Klok
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, Leeuwarden, The Netherlands; Paqell B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
| | - Annemiek Ter Heijne
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands.
| |
Collapse
|
6
|
Liu Z, Yang M, Mu T, Liu J, Chen L, Miao D, Xing J. Organic layer characteristics and microbial utilization of the biosulfur globules produced by haloalkaliphilic Thioalkalivibrio versutus D301 during biological desulfurization. Extremophiles 2022; 26:27. [PMID: 35962820 DOI: 10.1007/s00792-022-01274-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 07/13/2022] [Indexed: 11/26/2022]
Abstract
The haloalkaliphilic genus Thioalkalivibrio, widely used in bio-desulfurization, can oxidize H2S to So, which is excreted outside cells in the form of biosulfur globules. As by-product of bio-desulfurization, information on biosulfur globules is still very scant, which limits its high-value utilization. In this paper, the characteristics of biosulfur globules produced by Thioalkalivibrio versutus D301 and the possibility of cultivating sulfur-oxidizing bacteria as a high biological-activity sulfur source were studied. The sulfur element in the biosulfur globules existed in the form α-S8, which was similar to chemical sulfur. The biosulfur globule was wrapped with an organic layer composed of polysaccharides and proteins. The composition of this organic layer could change. In the formation stage of biosulfur globules, the organic layer was dominated by polysaccharides, and in later stage, proteins became the main component. We speculated that the organic layer was mainly formed by the passive adsorption of organic matter secreted by cells. The existence of organic layer endowed biosulfur with better bioavailability. Compared with those found using chemical sulfur, the growth rates of Acidithiobacillus thiooxidans ATCC 19377T, Thiomicrospira microaerophila BDL05 and Thioalkalibacter halophilus BDH06 using biosulfur increased several folds to an order of magnitude, indicating that biosulfur was a good sulfur source for cultivating sulfur-oxidizing bacteria.
Collapse
Affiliation(s)
- Zhixia Liu
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, China
- School of Biology and Engineering, Hebei University of Science and Technology, Shijiazhuang, 050018, China
| | - Maohua Yang
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, China.
| | - Tingzhen Mu
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, China
| | - Jinlong Liu
- School of Biology and Engineering, Hebei University of Science and Technology, Shijiazhuang, 050018, China
| | - Linxu Chen
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China
| | - Delu Miao
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, China
| | - Jianmin Xing
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, China
- College of Chemical Engineering, University of Chinese Academy of Sciences, Beijing, 100049, China
- Chemistry and Chemical Engineering Guangdong Laboratory, Shantou, 515031, China
| |
Collapse
|
7
|
Liu M, Liu H, Mei F, Yang N, Zhao D, Ai G, Xiang H, Zheng Y. Identification of the Biosynthetic Pathway of Glycine Betaine That Is Responsible for Salinity Tolerance in Halophilic Thioalkalivibrio versutus D301. Front Microbiol 2022; 13:875843. [PMID: 35516424 PMCID: PMC9062515 DOI: 10.3389/fmicb.2022.875843] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 03/25/2022] [Indexed: 11/24/2022] Open
Abstract
Thioalkalivibrio versutus D301 has been widely used in the biodesulfurization process, as it is capable of oxidizing hydrogen sulfide to elemental sulfur under strongly halo-alkaline conditions. Glycine betaine contributes to the increased tolerance to extreme environments in some of Thioalkalivibrio species. However, the biosynthetic pathway of glycine betaine in Thioalkalivibrio remained unknown. Here, we found that genes associated with nitrogen metabolism of T. versutus D301 were significantly upregulated under high-salt conditions, causing the enhanced production of glycine betaine that functions as a main compatible solute in response to the salinity stress. Glycine betaine was synthesized by glycine methylation pathway in T. versutus D301, with glycine N-methyltransferase (GMT) and sarcosine dimethylglycine N-methyltransferase (SDMT) as key enzymes in this pathway. Moreover, substrate specificities of GMT and SDMT were quite different from the well characterized enzymes for glycine methylation in halophilic Halorhodospira halochloris. Our results illustrate the glycine betaine biosynthetic pathway in the genus of Thioalkalivibrio for the first time, providing us with a better understanding of the biosynthesis of glycine betaine in haloalkaliphilic Thioalkalivibrio.
Collapse
Affiliation(s)
- Mengshuang Liu
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Science, University of Chinese Academy of Sciences, Beijing, China
| | - Hui Liu
- CAS Key Laboratory of Bio-based Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China
| | - Fangtong Mei
- College of Environment, Hohai University, Nanjing, China
| | - Niping Yang
- School of Life Sciences, Hebei University, Baoding, China
| | - Dahe Zhao
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Guomin Ai
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Hua Xiang
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Science, University of Chinese Academy of Sciences, Beijing, China
| | - Yanning Zheng
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- *Correspondence: Yanning Zheng,
| |
Collapse
|
8
|
Suenaga H, Matsuzawa T, Sahara T. Discovery by metagenomics of a functional tandem repeat sequence that controls gene expression in bacteria. FEMS Microbiol Ecol 2022; 98:6555030. [DOI: 10.1093/femsec/fiac037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Revised: 03/13/2022] [Accepted: 03/25/2022] [Indexed: 11/14/2022] Open
Abstract
Abstract
The ability to degrade exogenous compounds is acquired by adaptive processes of microorganisms when they are exposed to compounds that are foreign to their existing enzyme systems. Previously, we reported that simultaneous point mutations and mobile genetic elements cause the evolution and optimization of the degradation systems for aromatic compounds. In the present study, we propose another element with this role—tandem repeats. The novel metagenomic tandem repeat (MTR) sequence T(G/A)ACATG(A/C)T was identified in the 5′-untranslated regions of catechol 2,3-dioxygenase (C23O)-encoding genes by metagenomic analysis. Recombinant Escherichia coli carrying a C23O gene with various numbers of MTRs exhibited increased C23O protein expression and enzyme activity compared with cells expressing the C23O gene without MTRs. Real-time reverse transcription-PCR showed that changes in the numbers of MTRs affected the levels of detectable C23O mRNA in the E. coli host. Furthermore, the mRNAs transcribed from C23O genes containing various numbers of MTRs had longer half-lives than those transcribed from a C23O gene without MTRs. Thus, MTRs would affect the translation efficiency of the gene expression system. MTRs may change the expression levels of their downstream genes for adaptation to a fluctuating environment.
Collapse
Affiliation(s)
- Hikaru Suenaga
- Cellular and Molecular Biotechnology Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan
| | - Tomohiko Matsuzawa
- Department of Applied Biological Science, Faculty of Agriculture, Kagawa University, Miki-cho, Kagawa, Japan
| | - Takehiko Sahara
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan
| |
Collapse
|
9
|
Ma L, Yang W, Huang S, Liu R, Li H, Huang X, Xiong J, Liu X. Integrative Assessments on Molecular Taxonomy of Acidiferrobacter thiooxydans ZJ and Its Environmental Adaptation Based on Mobile Genetic Elements. Front Microbiol 2022; 13:826829. [PMID: 35250944 PMCID: PMC8889020 DOI: 10.3389/fmicb.2022.826829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 01/07/2022] [Indexed: 11/13/2022] Open
Abstract
Acidiferrobacter spp. are facultatively anaerobic acidophiles that belong to a distinctive Acidiferrobacteraceae family, which are similar to Ectothiorhodospiraceae phylogenetically, and are closely related to Acidithiobacillia class/subdivision physiologically. The limited genome information has kept them from being studied on molecular taxonomy and environmental adaptation in depth. Herein, Af. thiooxydans ZJ was isolated from acid mine drainage (AMD), and the complete genome sequence was reported to scan its genetic constitution for taxonomic and adaptative feature exploration. The genome has a single chromosome of 3,302,271 base pairs (bp), with a GC content of 63.61%. The phylogenetic tree based on OrthoANI highlighted the unique position of Af. thiooxydans ZJ, which harbored more unique genes among the strains from Ectothiorhodospiraceae and Acidithiobacillaceae by pan-genome analysis. The diverse mobile genetic elements (MGEs), such as insertion sequence (IS), clustered regularly interspaced short palindromic repeat (CRISPR), prophage, and genomic island (GI), have been identified and characterized in Af. thiooxydans ZJ. The results showed that Af. thiooxydans ZJ may effectively resist the infection of foreign viruses and gain functional gene fragments or clusters to shape its own genome advantageously. This study will offer more evidence of the genomic plasticity and improve our understanding of evolutionary adaptation mechanisms to extreme AMD environment, which could expand the potential utilization of Af. thiooxydans ZJ as an iron and sulfur oxidizer in industrial bioleaching.
Collapse
Affiliation(s)
- Liyuan Ma
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, China.,Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China
| | - Weiyi Yang
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Shanshan Huang
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China
| | - Rui Liu
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Huiying Li
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China
| | - Xinping Huang
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Junming Xiong
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Xueduan Liu
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China
| |
Collapse
|
10
|
Mol AR, van Langeveld LJ, van der Weijden RD, Klok JBM, Buisman CJN. Effect of sulfide on morphology and particle size of biologically produced elemental sulfur from industrial desulfurization reactors. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127696. [PMID: 34823957 DOI: 10.1016/j.jhazmat.2021.127696] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 10/12/2021] [Accepted: 11/01/2021] [Indexed: 06/13/2023]
Abstract
We investigated the effect of polysulfide formation on properties of biologically produced elemental sulfur (S8) crystals, which are produced during biological desulfurization (BD) of gas. The recent addition of an anoxic-sulfidic reactor (AnSuR) to the BD process resulted in agglomerated particles with better settleability for S8 separation. In the AnSuR, polysulfides are formed by the reaction of bisulfide (HS-) with S8 and are subsequently oxidized to S8 in a gas-lift reactor. Therefore, sulfur particles from the BD are shaped (i.e. morphology and particle size) both by formation and dissolution. We assessed the reaction of HS- with S8 particles in anoxic, abiotic experiments in a batch reactor using two S8 samples from industrial BD reactors. Under these conditions, the sulfur particle surface became coarser and more porous, and in addition the smallest particles disappeared. Agglomerates initially fell apart but were reformed at a later stage. Moreover, we found different observed polysulfide formation rates for each S8 sample, which was related to the initial morphology and size. Our findings show that particle properties can be controlled abiotically and that settleability of S8 is increased by increasing both the HS--S8 ratio and retention time.
Collapse
Affiliation(s)
- Annemerel R Mol
- Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands; Paqell B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands.
| | - Lourens J van Langeveld
- Paqell B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands; Department of Earth Sciences, Utrecht University, Princetonlaan 8, 3584 CB Utrecht, The Netherlands.
| | - Renata D van der Weijden
- Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, P.O: Box 1113, 8900 CC Leeuwarden, The Netherlands.
| | - Johannes B M Klok
- Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands; Paqell B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, P.O: Box 1113, 8900 CC Leeuwarden, The Netherlands.
| | - Cees J N Buisman
- Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, P.O: Box 1113, 8900 CC Leeuwarden, The Netherlands.
| |
Collapse
|
11
|
de Rink R, B Lavender M, Liu D, Klok JBM, Sorokin DY, Ter Heijne A, Buisman CJN. Continuous electron shuttling by sulfide oxidizing bacteria as a novel strategy to produce electric current. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127358. [PMID: 34879559 DOI: 10.1016/j.jhazmat.2021.127358] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 08/30/2021] [Accepted: 09/24/2021] [Indexed: 06/13/2023]
Abstract
Sulfide oxidizing bacteria (SOB) are widely applied in industry to convert toxic H2S into elemental sulfur. Haloalkaliphilic planktonic SOB can remove sulfide from solution under anaerobic conditions (SOB are 'charged'), and release electrons at an electrode (discharge of SOB). The effect of this electron shuttling on product formation and biomass growth is not known. Here, we study and demonstrate a continuous process in which SOB remove sulfide from solution in an anaerobic 'uptake chamber', and shuttle these electrons to the anode of an electrochemical cell, in the absence of dissolved sulfide. Two experiments over 31 and 41 days were performed. At a sulfide loading rate of 1.1 mmolS/day, electricity was produced continuously (3 A/m2) without dissolved sulfide in the anolyte. The main end product was sulfate (56% in experiment 1% and 78% in experiment 2), and 87% and 77% of the electrons in sulfide were recovered as electricity. It was found that the current density was dependent on the sulfide loading rate and not on the anode potential. Biological growth occurred, mainly at the anode as biofilm, in which the deltaproteobacterial genus Desulfurivibrio was dominating. Our results demonstrate a novel strategy to produce electricity from sulfide in an electrochemical system.
Collapse
Affiliation(s)
- Rieks de Rink
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands; Paqell B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
| | - Micaela B Lavender
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands
| | - Dandan Liu
- Paqell B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
| | - Johannes B M Klok
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands; Paqell B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, Leeuwarden, The Netherlands
| | - Dimitry Y Sorokin
- Winogradsky Institute of Microbiology, Research Centre of Biotechnology RAS, Leninskii Prospect, 33/2, 119071 Moscow, Russia; Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Annemiek Ter Heijne
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands.
| | - Cees J N Buisman
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, The Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, Leeuwarden, The Netherlands
| |
Collapse
|
12
|
Chen L, Li W, Zhao Y, Zhou Y, Zhang S, Meng L. Isolation and application of a mixotrophic sulfide-oxidizing Cohnella thermotolerans LYH-2 strain to sewage sludge composting for hydrogen sulfide odor control. BIORESOURCE TECHNOLOGY 2022; 345:126557. [PMID: 34906701 DOI: 10.1016/j.biortech.2021.126557] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 12/07/2021] [Accepted: 12/08/2021] [Indexed: 06/14/2023]
Abstract
To investigate the influences of sulfide oxidizing bacteria on H2S odor control in sewage sludge composting, a facultative chemolithotroph strain was isolated and identified as Cohnella thermotolerans LYH-2. Strain LYH-2 decreased the initially added sulfide by 94.6% when glucose and NH4Cl were used as the optimal energy substrates. The biotransformation of sulfide substrates followed first-order reaction kinetics, and the highest degradation rate constant (0.0537 h-1) and bacterial dry weight (0.745 g/L) were obtained at 300 mg/L of initial sulfide. The C. thermotolerans strain was inoculated as the bacterial agent into the sewage sludge and rice husk composting in forced ventilation composting reactors for 25 d; the bacterial inoculation prolonged the thermophilic period by 2 d, decreased 35.4% of H2S odor emission, and accelerated the composting process compared to the control group. The results demonstrated that C. thermotolerans inoculants effectively controlled H2S emission and promoted maturity in sewage sludge composting.
Collapse
Affiliation(s)
- Li Chen
- School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Weiguang Li
- School of Environment, Harbin Institute of Technology, Harbin 150090, PR China; State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin 150090, PR China.
| | - Yi Zhao
- School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Yujie Zhou
- School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Shumei Zhang
- Institute of Microbiology, Heilongjiang Academy of Sciences, Harbin 150010, PR China
| | - Liqiang Meng
- Institute of Microbiology, Heilongjiang Academy of Sciences, Harbin 150010, PR China
| |
Collapse
|
13
|
Mol A, Meuwissen DJM, Pruim SD, Zhou C, van Vught V, Klok JBM, Buisman CJN, van der Weijden RD. Novel Agglomeration Strategy for Elemental Sulfur Produced during Biological Gas Desulfurization. ACS OMEGA 2021; 6:27913-27923. [PMID: 34722991 PMCID: PMC8554788 DOI: 10.1021/acsomega.1c03701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Accepted: 09/28/2021] [Indexed: 06/13/2023]
Abstract
This article presents a novel crystal agglomeration strategy for elemental sulfur (S) produced during biological desulfurization (BD). A key element is the nucleophilic dissolution of S by sulfide (HS-) to polysulfides (S x 2-), which was enhanced by a sulfide-rich, anoxic reactor. This study demonstrates that with enhanced S x 2- formation, crystal agglomerates are formed with a uniform size (14.7 ± 3.1 μm). In contrast, with minimal S x 2- formation, particle size fluctuates markedly (5.6 ± 5.9 μm) due to the presence of agglomerates and single crystals. Microscopic analysis showed that the uniformly sized agglomerates had an irregular structure, whereas the loose particles and agglomerates were more defined and bipyramidal. The irregular agglomerates are explained by dissolution of S by (poly)sulfides, which likely changed the crystal surface structure and disrupted crystal growth. Furthermore, S from S x 2- appeared to form at least 5× faster than from HS- based on the average S x 2- chain length of x ≈ 5, thereby stimulating particle agglomeration. In addition, microscopy suggested that S crystal growth proceeded via amorphous S globules. Our findings imply that the crystallization product is controlled by the balance between dissolution and formation of S. This new insight has a strong potential to prevent poor S settleability in BD.
Collapse
Affiliation(s)
- Annemerel
R. Mol
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- Paqell
B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
| | - Derek J. M. Meuwissen
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Sebastian D. Pruim
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Chenyu Zhou
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Vincent van Vught
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Johannes B. M. Klok
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- Paqell
B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
- Wetsus,
European Centre of Excellence for Sustainable Water Technology, P.O. Box 1113, 8900 CC Leeuwarden, The Netherlands
| | - Cees J. N. Buisman
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- Wetsus,
European Centre of Excellence for Sustainable Water Technology, P.O. Box 1113, 8900 CC Leeuwarden, The Netherlands
| | - Renata D. van der Weijden
- Environmental
Technology, Wageningen University &
Research, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- Wetsus,
European Centre of Excellence for Sustainable Water Technology, P.O. Box 1113, 8900 CC Leeuwarden, The Netherlands
| |
Collapse
|
14
|
Liu ZX, Yang MH, Mu TZ, Liu JL, Zhang X, Xing JM. Transcriptional response of Thialkalivibrio versutus D301 to different sulfur sources and identification of the sulfur oxidation pathways. J Biotechnol 2021; 329:160-169. [PMID: 33592216 DOI: 10.1016/j.jbiotec.2021.02.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Revised: 01/26/2021] [Accepted: 02/07/2021] [Indexed: 12/27/2022]
Abstract
The genus Thialkalivibrio plays an essential role in the biological desulfurization system. However, to date, the sulfur oxidation pathways of Thialkalivibrio are not clearly understood. Here, we performed transcriptomic analysis on Thialkalivibrio versutus D301 with either thiosulfate or chemical sulfur as the sulfur source to understand it. The results show that T. versutus D301 has a higher growth rate and sulfur oxidation activity when thiosulfate is utilized. The use of chemical sulfur as sulfur source leads to decreased expression of genes involved in carbon metabolism, ribosome synthesis and oxidative phosphorylation in T. versutus D301. Potentially due to the adsorption to sulfur particles, the genes related to flagellum assembly and motivation are significantly induced in T. versutus D301 in the presence of chemical sulfur. In the periplasm, both thiosulfate and polysulfide from the chemical sulfur are oxidized to sulfate via the similar truncated Sox system (SoxAXYZB). Then, part of polysulfide reached to cytoplasm through an unidentified route is oxidized to sulfite by the Dsr-like system. The sulfite in the cytoplasm is further catalyzed to sulfate by SoxB or SoeABC. Overall, the difference in the oxidation rates of D301 can be mainly attributed to the bioavailability of the two sulfur sources, not the sulfur oxidation pathways.
Collapse
Affiliation(s)
- Zhi-Xia Liu
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, China; School of Biology and Engineering, Hebei University of Science and Technology, Shijiazhuang, Hebei Province 050018, China
| | - Mao-Hua Yang
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, China.
| | - Ting-Zhen Mu
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, China
| | - Jin-Long Liu
- School of Biology and Engineering, Hebei University of Science and Technology, Shijiazhuang, Hebei Province 050018, China.
| | - Xiang Zhang
- Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, 250100, China
| | - Jian-Min Xing
- CAS Key Laboratory of Green Process and Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, China.
| |
Collapse
|
15
|
Kiragosyan K, Picard M, Timmers PHA, Sorokin DY, Klok JBM, Roman P, Janssen AJH. Effect of methanethiol on process performance, selectivity and diversity of sulfur-oxidizing bacteria in a dual bioreactor gas biodesulfurization system. JOURNAL OF HAZARDOUS MATERIALS 2020; 398:123002. [PMID: 32506049 DOI: 10.1016/j.jhazmat.2020.123002] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Revised: 04/30/2020] [Accepted: 05/19/2020] [Indexed: 06/11/2023]
Abstract
This study provides important new insights on how to achieve high sulfur selectivities and stable gas biodesulfurization process operation in the presence of both methanethiol and H2S in the feed gas. On the basis of previous research, we hypothesized that a dual bioreactor lineup (with an added anaerobic bioreactor) would favor sulfur-oxidizing bacteria (SOB) that yield a higher sulfur selectivity. Therefore, the focus of the present study was to enrich thiol-resistant SOB that can withstand methanethiol, the most prevalent and toxic thiol in sulfur-containing industrial off gases. In addition, the effect of process conditions on the SOB population dynamics was investigated. The results confirmed that thiol-resistant SOB became dominant with a concomitant increase of the sulfur selectivity from 75 mol% to 90 mol% at a loading rate of 2 mM S methanethiol day-1. The abundant SOB in the inoculum - Thioalkalivibrio sulfidiphilus - was first outcompeted by Alkalilimnicola ehrlichii after which Thioalkalibacter halophilus eventually became the most abundant species. Furthermore, we found that the actual electron donor in our lab-scale biodesulfurization system was polysulfide, and not the primarily supplied sulfide.
Collapse
Affiliation(s)
- Karine Kiragosyan
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands; Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700 AA Wageningen, the Netherlands.
| | - Magali Picard
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands; Eurofins Agroscience Services Chem SAS 75, chemin de Sommières 30310, Vergèze, France
| | - Peer H A Timmers
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands; Laboratory of Microbiology, Wageningen University & Research, Wageningen, the Netherlands
| | - Dimitry Y Sorokin
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands; Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of Sciences, Prospect 60-let Oktyabrya 7/2, Moscow, Russian Federation; Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, the Netherlands
| | - Johannes B M Klok
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands; Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700 AA Wageningen, the Netherlands; Paqell B.V., Reactorweg 301, 3542 AD, Utrecht, the Netherlands
| | - Pawel Roman
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands
| | - Albert J H Janssen
- Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700 AA Wageningen, the Netherlands; Shell, Oostduinlaan 2, 2596 JM, the Hague, the Netherlands
| |
Collapse
|
16
|
A New Thioalkalivibrio sp. Strain Isolated from Petroleum-Contaminated Brackish Estuary Sediments: A New Candidate for Bio-Based Application for Sulfide Oxidation in Halo-Alkaline Conditions. WATER 2020. [DOI: 10.3390/w12051385] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
A new halo-alkaline sulfur-oxidising bacterial strain was isolated from brackish estuary sediments contaminated by total petroleum hydrocarbon. The isolate was classified as a new strain of Thioalkalivibrio sulfidiphilus sp., showing a higher capability of adaptation to pH and a higher optimal sodium concentration for growth, when compared to Thioalkalivibrio sulfidiphilus sp. HL-EbGr7, type strain of the species. The strain was capable to grow in saline concentrations up to 1.5 M Na+ and pH up to 10. The genome of the new isolate was sequenced and annotated. The comparison with the genome of Thioalkalivibrio sulfidiphilus sp. HL-EbGr7 showed a duplication of an operon encoding for a putative primary sodium extruding pump and the presence of a sodium/proton antiporter with optimal efficiency at halo-alkaline conditions. The new strain was able to oxidize sulfide at halo-alkaline conditions at the rate of 1 mmol/mg-N/h, suitable for industrial applications dedicated to the recovery of alkaline scrubber for H2S emission absorption and abatement.
Collapse
|
17
|
Fasihi M, Fazaelipoor MH, Rezakazemi M. H 2S removal from sour water in a combination system of trickling biofilter and biofilter. ENVIRONMENTAL RESEARCH 2020; 184:109380. [PMID: 32182483 DOI: 10.1016/j.envres.2020.109380] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Revised: 01/22/2020] [Accepted: 03/10/2020] [Indexed: 06/10/2023]
Abstract
Desulfurization of sour water was investigated in a combination system of trickling biofilter (BTF) and biofilter (BF) filled with ceramic packing materials. A critical elimination capacity (EC) of 251.93 g S m-3 h-1 was obtained for the BTF/BF system during a stepwise increase of sulfide concentration from 10 to 60 g S m-3. This stepwise increment of loading rate also led to critical ECs of 176.21 and 478.88 g S m-3 h-1 for BTF and BF, respectively. A dynamic model describing biological H2S removal from sour water in the BTF/BF was developed and calibrated by a set of experimental data. The model includes the main processes occurring in the BTF/BF such as mass transfer between phases, diffusion and biological reaction inside the biofilm. The model also considers the intermediate (elemental sulfur) production/consumption and sulfate formation through the different oxidation pathways. The model validation was performed under a starvation period and a dynamic H2S loading period. A sensitivity analysis was carried out to evaluate the relative importance of the key parameters on the performance of the BTF/BF system. Sensitivity analysis showed that the BTF performance is more affected by the parameters related to H2S mass transfer.
Collapse
Affiliation(s)
- Mojtaba Fasihi
- Department of Chemical Engineering, Faculty of Engineering, Shahid Bahonar University of Kerman, Iran
| | - Mohammad Hassan Fazaelipoor
- Department of Chemical Engineering, Faculty of Engineering, Shahid Bahonar University of Kerman, Iran; Department of Chemical and Polymer Engineering, Faculty of Engineering, Yazd University, Yazd, Iran.
| | - Mashallah Rezakazemi
- Faculty of Chemical and Materials Engineering, Shahrood University of Technology, Shahrood, Iran
| |
Collapse
|
18
|
Li W, Zhang M, Kang D, Chen W, Yu T, Xu D, Zeng Z, Li Y, Zheng P. Mechanisms of sulfur selection and sulfur secretion in a biological sulfide removal (BISURE) system. ENVIRONMENT INTERNATIONAL 2020; 137:105549. [PMID: 32086075 DOI: 10.1016/j.envint.2020.105549] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Revised: 01/06/2020] [Accepted: 02/03/2020] [Indexed: 06/10/2023]
Abstract
Biological desulfurization technology is a sustainable process for the sulfide removal from biogas, which has multiple advantages. In this study, a biological sulfide removal (BISURE) system was established to investigate the working performances and process mechanisms. The results showed that the sulfide removal rate was 2.30 kg-S/(m3 d), the sulfide removal efficiency was higher than 98%, the sulfur production rate was 1.76 kg-S/(m3 d), the sulfur selectivity was 75.02 ± 3.63% and the main form of products (sulfur compounds) was Rosickyite-S and S8. The performance of BISURE system was supported by the dominant genus (abundance more than 60%) of sulfur-oxidizing bacteria (SOB) which shifted to Thiovirga at the high SLR. The sqr and dsrA genes could serve as the indicators for the pathway of two-step sulfide oxidation, i.e. "partial sulfide oxidation (PSO, sulfide → sulfur)" and "complete sulfide oxidation (CSO, sulfur → sulfate)". The sulfur selectivity was improved by enhancing PSO and inhibiting CSO with the indication of two genes. The cellular sulfur secretion was revealed, and the "outer-membrane vesicles (OMVs)-dependent" sulfur-secreting hypothesis was proposed to explain the transportation of elemental sulfur from inside to outside of SOB cells. The findings of this work provide a new perspective to understand the sulfur selection of sulfide bio-oxidation and the sulfur secretion of SOB cells so as to promote the development of biological desulfurization technology.
Collapse
Affiliation(s)
- Wenji Li
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Meng Zhang
- Advanced Environmental Biotechnology Centre, Nanyang Environment & Water Research Institute, Nanyang Technological University, Singapore
| | - Da Kang
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Wenda Chen
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Tao Yu
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Dongdong Xu
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Zhuo Zeng
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Yiyu Li
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Ping Zheng
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China.
| |
Collapse
|
19
|
Kiragosyan K, Picard M, Sorokin DY, Dijkstra J, Klok JBM, Roman P, Janssen AJH. Effect of dimethyl disulfide on the sulfur formation and microbial community composition during the biological H 2S removal from sour gas streams. JOURNAL OF HAZARDOUS MATERIALS 2020; 386:121916. [PMID: 31884361 DOI: 10.1016/j.jhazmat.2019.121916] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 12/06/2019] [Accepted: 12/15/2019] [Indexed: 06/10/2023]
Abstract
Removal of organic and inorganic sulfur compounds from sour gases is required because of their toxicity and atmospheric pollution. The most common are hydrogen sulfide (H2S) and methanethiol (MT). Under oxygen-limiting conditions about 92 mol% of sulfide is oxidized to sulfur by haloalkaliphilic sulfur-oxidizing bacteria (SOB), whilst the remainder is oxidized either biologically to sulfate or chemically to thiosulfate. MT is spontaneously oxidized to dimethyl disulfide (DMDS), which was found to inhibit the oxidation of sulfide to sulfate. Hence, we assessed the effect of DMDS on product formation in a lab-scale biodesulfurization setup. DMDS was quantified using a newly, in-house developed analytical method. Subsequently, a chemical reaction mechanism was proposed for the formation of methanethiol and dimethyl trisulfide from the reaction between sulfide and DMDS. Addition of DMDS resulted in significant inhibition of sulfate formation, leading to 96 mol% of sulfur formation. In addition, a reduction in the dominating haloalkaliphilic SOB species, Thioalkalivibrio sulfidiphilus, was observed in favor of Thioalkaibacter halophilus as a more DMDS-tolerant with the 50 % inhibition coefficient at 2.37 mM DMDS.
Collapse
Affiliation(s)
- Karine Kiragosyan
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands; Environmental Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands.
| | - Magali Picard
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands; Eurofins Agroscience Services Chem SAS 75, chemin de Sommières 30310, Vergèze, France
| | - Dimitry Y Sorokin
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands; Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of Sciences, Prospect 60-let Oktyabrya 7/2, Moscow, Russian Federation; Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Jelmer Dijkstra
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands
| | - Johannes B M Klok
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands; Environmental Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands; Paqell B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
| | - Pawel Roman
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands
| | - Albert J H Janssen
- Environmental Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands; Shell, Oostduinlaan 2, 2596 JM the Hague, The Netherlands
| |
Collapse
|
20
|
de Rink R, Klok JBM, van Heeringen GJ, Keesman KJ, Janssen AJH, Ter Heijne A, Buisman CJN. Biologically enhanced hydrogen sulfide absorption from sour gas under haloalkaline conditions. JOURNAL OF HAZARDOUS MATERIALS 2020; 383:121104. [PMID: 31586887 DOI: 10.1016/j.jhazmat.2019.121104] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Revised: 07/21/2019] [Accepted: 08/26/2019] [Indexed: 06/10/2023]
Abstract
We studied a biotechnological desulfurization process for removal of toxic hydrogen sulfide (H2S) from sour gas. The process consists of two steps: i) Selective absorption of H2S into a (bi)carbonate solution in the absorber column and ii) conversion of sulfide to sulfur by sulfide oxidizing bacteria (SOB) in the aerated bioreactor. In previous studies, several physico-chemical factors were assessed to explain the observed enhancement of H2S absorption in the absorber, but a full explanation was not provided. We investigated the relation between the metabolic activity of SOB and the enhancement factor. Two continuous experiments on pilot-scale were performed to determine H2S absorption efficiencies at different temperatures and biomass concentrations. The absorption efficiency improved at increasing temperatures, i.e. H2S concentration in the treated gas decreased from 715 ± 265 ppmv at 25.4 °C to 69 ± 25 ppmv at 39.4 °C. The opposite trend is expected when H2S absorption is solely determined by physico-chemical factors. Furthermore, increasing biomass concentrations to the absorber also resulted in decreased H2S concentrations in the treated gas, from approximately 6000 ppmv without biomass to 1664 ± 126 ppmv at 44 mg N/L. From our studies it can be concluded that SOB activity enhances H2S absorption and leads to increased H2S removal efficiencies in biotechnological gas desulfurization.
Collapse
Affiliation(s)
- Rieks de Rink
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, the Netherlands; Paqell B.V., Reactorweg 301, 3542 AD Utrecht, the Netherlands
| | - Johannes B M Klok
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, the Netherlands; Paqell B.V., Reactorweg 301, 3542 AD Utrecht, the Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, Leeuwarden, the Netherlands
| | | | - Karel J Keesman
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, Leeuwarden, the Netherlands; Mathematical and Statistical methods, Wageningen University, P.O. Box 16, 6700 AA Wageningen, the Netherlands
| | - Albert J H Janssen
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, the Netherlands
| | - Annemiek Ter Heijne
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, the Netherlands.
| | - Cees J N Buisman
- Environmental Technology, Wageningen University, P.O. Box 17, Wageningen, the Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, Leeuwarden, the Netherlands
| |
Collapse
|
21
|
Abstract
Bacterial communities’ composition, activity and robustness determines the effectiveness of biofiltration units for the desulfurization of biogas. It is therefore important to get a better understanding of the bacterial communities that coexist in biofiltration units under different operational conditions for the removal of H2S, the main reduced sulfur compound to eliminate in biogas. This review presents the main characteristics of sulfur-oxidizing chemotrophic bacteria that are the base of the biological transformation of H2S to innocuous products in biofilters. A survey of the existing biofiltration technologies in relation to H2S elimination is then presented followed by a review of the microbial ecology studies performed to date on biotrickling filter units for the treatment of H2S in biogas under aerobic and anoxic conditions.
Collapse
|
22
|
Kiragosyan K, Klok JB, Keesman KJ, Roman P, Janssen AJ. Development and validation of a physiologically based kinetic model for starting up and operation of the biological gas desulfurization process under haloalkaline conditions. WATER RESEARCH X 2019; 4:100035. [PMID: 31334497 PMCID: PMC6614595 DOI: 10.1016/j.wroa.2019.100035] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Revised: 06/28/2019] [Accepted: 07/01/2019] [Indexed: 05/14/2023]
Abstract
Hydrogen sulfide is a toxic and corrosive gas that must be removed from gaseous hydrocarbon streams prior to combustion. This paper describes a gas biodesulfurization process where sulfur-oxidizing bacteria (SOB) facilitate sulfide conversion to both sulfur and sulfate. In order to optimize the formation of sulfur, it is crucial to understand the relations between the SOB microbial composition, kinetics of biological and abiotic sulfide oxidation and the effects on the biodesulfurization process efficiency. Hence, a physiologically based kinetic model was developed for four different inocula. The resulting model can be used as a tool to evaluate biodesulfurization process performance. The model relies on a ratio of two key enzymes involved in the sulfide oxidation process, i.e., flavocytochrome c and sulfide-quinone oxidoreductase (FCC and SQR). The model was calibrated by measuring biological sulfide oxidation rates for different inocula obtained from four full-scale biodesulfurization installations fed with gases from various industries. Experimentally obtained biological sulfide oxidation rates showed dissimilarities between the tested biomasses which could be explained by assuming distinctions in the key-enzyme ratios. Hence, we introduce a new model parameter α to whereby α describes the ratio between the relative expression levels of FCC and SQR enzymes. Our experiments show that sulfur production is the highest at low α values.
Collapse
Affiliation(s)
- Karine Kiragosyan
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911, MA, Leeuwarden, the Netherlands
- Environmental Technology, Wageningen University, P.O. Box 17, 6700, AA, Wageningen, the Netherlands
- Corresponding author. Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911, MA, Leeuwarden, the Netherlands.
| | - Johannes B.M. Klok
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911, MA, Leeuwarden, the Netherlands
- Environmental Technology, Wageningen University, P.O. Box 17, 6700, AA, Wageningen, the Netherlands
- Paqell B.V., Reactorweg 301, 3542, AD, Utrecht, the Netherlands
| | - Karel J. Keesman
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911, MA, Leeuwarden, the Netherlands
- Biobased Chemistry & Technology, Wageningen University, P.O. Box 17, 6700, AA, Wageningen, the Netherlands
| | - Pawel Roman
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911, MA, Leeuwarden, the Netherlands
| | - Albert J.H. Janssen
- Environmental Technology, Wageningen University, P.O. Box 17, 6700, AA, Wageningen, the Netherlands
- Shell, Oostduinlaan 2, 2596, M the Hague, the Netherlands
| |
Collapse
|
23
|
de Rink R, Klok JB, van Heeringen GJ, Sorokin DY, ter Heijne A, Zeijlmaker R, Mos YM, de Wilde V, Keesman KJ, Buisman CJ. Increasing the Selectivity for Sulfur Formation in Biological Gas Desulfurization. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:4519-4527. [PMID: 30882225 PMCID: PMC6581417 DOI: 10.1021/acs.est.8b06749] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
In the biotechnological desulfurization process under haloalkaline conditions, dihydrogen sulfide (H2S) is removed from sour gas and oxidized to elemental sulfur (S8) by sulfide-oxidizing bacteria. Besides S8, the byproducts sulfate (SO42-) and thiosulfate (S2O32-) are formed, which consume caustic and form a waste stream. The aim of this study was to increase selectivity toward S8 by a new process line-up for biological gas desulfurization, applying two bioreactors with different substrate conditions (i.e., sulfidic and microaerophilic), instead of one (i.e., microaerophilic). A 111-day continuous test, mimicking full scale operation, demonstrated that S8 formation was 96.6% on a molar H2S supply basis; selectivity for SO42- and S2O32- were 1.4 and 2.0% respectively. The selectivity for S8 formation in a control experiment with the conventional 1-bioreactor line-up was 75.6 mol %. At start-up, the new process line-up immediately achieved lower SO42- and S2O32- formations compared to the 1-bioreactor line-up. When the microbial community adapted over time, it was observed that SO42- formation further decreased. In addition, chemical formation of S2O32- was reduced due to biologically mediated removal of sulfide from the process solution in the anaerobic bioreactor. The increased selectivity for S8 formation will result in 90% reduction in caustic consumption and waste stream formation compared to the 1-bioreactor line-up.
Collapse
Affiliation(s)
- Rieks de Rink
- Environmental
Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- Paqell
B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
| | - Johannes B.M. Klok
- Paqell
B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
- Wetsus, European
Centre of Excellence for Sustainable Water
Technology, Oostergoweg
9, 8911 MA Leeuwarden, The Netherlands
| | | | - Dimitry Y. Sorokin
- Winogradsky
Institute of Microbiology, Research Centre
of Biotechnology, Russian Academy of Sciences, Prospect 60-let Oktyabrya 7/2, Moscow, Russian Federation
- Department
of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Annemiek ter Heijne
- Environmental
Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- E-mail:
| | | | - Yvonne M. Mos
- Environmental
Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Vinnie de Wilde
- Environmental
Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Karel J. Keesman
- Mathematical
and Statistical methods, Wageningen University, P.O. Box 16, 6700 AA Wageningen, The Netherlands
| | - Cees J.N. Buisman
- Environmental
Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- Wetsus, European
Centre of Excellence for Sustainable Water
Technology, Oostergoweg
9, 8911 MA Leeuwarden, The Netherlands
| |
Collapse
|
24
|
Berben T, Overmars L, Sorokin DY, Muyzer G. Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria. Front Microbiol 2019; 10:160. [PMID: 30837958 PMCID: PMC6382920 DOI: 10.3389/fmicb.2019.00160] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Accepted: 01/22/2019] [Indexed: 12/20/2022] Open
Abstract
Soda lakes are saline alkaline lakes characterized by high concentrations of sodium carbonate/bicarbonate which lead to a stable elevated pH (>9), and moderate to extremely high salinity. Despite this combination of extreme conditions, biodiversity in soda lakes is high, and the presence of diverse microbial communities provides a driving force for highly active biogeochemical cycles. The sulfur cycle is one of the most important of these and bacterial sulfur oxidation is dominated by members of the obligately chemolithoautotrophic genus Thioalkalivibrio. Currently, 10 species have been described in this genus, but over one hundred isolates have been obtained from soda lake samples. The genomes of 75 strains were sequenced and annotated previously, and used in this study to provide a comprehensive picture of the diversity and distribution of genes related to dissimilatory sulfur metabolism in Thioalkalivibrio. Initially, all annotated genes in 75 Thioalkalivibrio genomes were placed in ortholog groups and filtered by bi-directional best BLAST analysis. Investigation of the ortholog groups containing genes related to sulfur oxidation showed that flavocytochrome c (fcc), the truncated sox system, and sulfite:quinone oxidoreductase (soe) are present in all strains, whereas dissimilatory sulfite reductase (dsr; which catalyzes the oxidation of elemental sulfur) was found in only six strains. The heterodisulfide reductase system (hdr), which is proposed to oxidize sulfur to sulfite in strains lacking both dsr and soxCD, was detected in 73 genomes. Hierarchical clustering of strains based on sulfur gene repertoire correlated closely with previous phylogenomic analysis. The phylogenetic analysis of several sulfur oxidation genes showed a complex evolutionary history. All in all, this study presents a comprehensive investigation of sulfur metabolism-related genes in cultivated Thioalkalivibrio strains and provides several avenues for future research.
Collapse
Affiliation(s)
- Tom Berben
- Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands
| | - Lex Overmars
- Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands
| | - Dimitry Y Sorokin
- Winogradsky Institute for Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia.,Department of Biotechnology, Delft University of Technology, Delft, Netherlands
| | - Gerard Muyzer
- Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands
| |
Collapse
|
25
|
Hershey OS, Kallmeyer J, Wallace A, Barton MD, Barton HA. High Microbial Diversity Despite Extremely Low Biomass in a Deep Karst Aquifer. Front Microbiol 2018; 9:2823. [PMID: 30534116 PMCID: PMC6275181 DOI: 10.3389/fmicb.2018.02823] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 11/02/2018] [Indexed: 12/14/2022] Open
Abstract
Despite the importance of karst aquifers as a source of drinking water, little is known about the role of microorganisms in maintaining the quality of this water. One of the limitations in exploring the microbiology of these environments is access, which is usually limited to wells and surface springs. In this study, we compared the microbiology of the Madison karst aquifer sampled via the potentiometric lakes of Wind Cave with surface sampling wells and a spring. Our data indicated that only the Streeter Well (STR), which is drilled into the same hydrogeologic domain as the Wind Cave Lakes (WCL), allowed access to water with the same low biomass (1.56-9.25 × 103 cells mL-1). Filtration of ∼300 L of water from both of these sites through a 0.2 μm filter allowed the collection of sufficient cells for DNA extraction, PCR amplification of 16S rRNA gene sequences, and identification through pyrosequencing. The results indicated that bacteria (with limited archaea and no detectable eukaryotic organisms) dominated both water samples; however, there were significant taxonomic differences in the bacterial populations of the samples. The STR sample was dominated by a single phylotype within the Gammaproteobacteria (Order Acidithiobacillales), which dramatically reduced the overall diversity and species richness of the population. In WCL, despite less organic carbon, the bacterial population was significantly more diverse, including significant contributions from the Gammaproteobacteria, Firmicutes, Chloroflexi, Actinobacteria, Planctomycetes, Fusobacter, and Omnitrophica phyla. Comparisons with similar oligotrophic environments suggest that karst aquifers have a greater species richness than comparable surface environs. These data also demonstrate that Wind Cave provides a unique opportunity to sample a deep, subterranean aquifer directly, and that the microbiology of such aquifers may be more complex than previously anticipated.
Collapse
Affiliation(s)
- Olivia S Hershey
- Department of Biology, University of Akron, Akron, OH, United States
| | - Jens Kallmeyer
- GFZ German Research Centre for Geosciences, Potsdam, Germany
| | - Andrew Wallace
- Department of Biological Sciences, Northern Kentucky University, Highland Heights, KY, United States
| | | | - Hazel A Barton
- Department of Biology, University of Akron, Akron, OH, United States.,Department of Geosciences, University of Akron, Akron, OH, United States
| |
Collapse
|
26
|
Lin S, Mackey HR, Hao T, Guo G, van Loosdrecht MCM, Chen G. Biological sulfur oxidation in wastewater treatment: A review of emerging opportunities. WATER RESEARCH 2018; 143:399-415. [PMID: 29986249 DOI: 10.1016/j.watres.2018.06.051] [Citation(s) in RCA: 108] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Revised: 06/15/2018] [Accepted: 06/22/2018] [Indexed: 06/08/2023]
Abstract
Sulfide prevails in both industrial and municipal waste streams and is one of the most troublesome issues with waste handling. Various technologies and strategies have been developed and used to deal with sulfide for decades, among which biological means make up a considerable portion due to their low operation requirements and flexibility. Sulfur bacteria play a vital role in these biotechnologies. In this article, conventional biological approaches dealing with sulfide and functional microorganisms are systematically reviewed. Linking the sulfur cycle with other nutrient cycles such as nitrogen or phosphorous, and with continued focus of waste remediation by sulfur bacteria, has led to emerging biotechnologies. Furthermore, opportunities for energy harvest and resource recovery based on sulfur bacteria are also discussed. The electroactivity of sulfur bacteria indicates a broad perspective of sulfur-based bioelectrochemical systems in terms of bioelectricity production and bioelectrochemical synthesis. The considerable PHA accumulation, high yield and anoxygenic growth conditions in certain phototrophic sulfur bacteria could provide an interesting alternative for bioplastic production. In this review, new merits of biological sulfide oxidation from a traditional environmental management perspective as well as a waste to resource perspective are presented along with their potential applications.
Collapse
Affiliation(s)
- Sen Lin
- Department of Civil and Environmental Engineering, The Hong Kong University of Science & Technology, Clear Water Bay, Kowloon, Hong Kong, China
| | - Hamish R Mackey
- Division of Sustainable Development, College of Science and Engineering, Hamad Bin Khalifa University, Education City, Doha, Qatar
| | - Tianwei Hao
- Department of Civil and Environmental Engineering, Faculty of Science and Technology, University of Macau, Macau, China; Department of Civil and Environmental Engineering, The Hong Kong University of Science & Technology, Clear Water Bay, Kowloon, Hong Kong, China.
| | - Gang Guo
- Department of Civil and Environmental Engineering, The Hong Kong University of Science & Technology, Clear Water Bay, Kowloon, Hong Kong, China
| | - Mark C M van Loosdrecht
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC, Delft, The Netherlands
| | - Guanghao Chen
- Department of Civil and Environmental Engineering, The Hong Kong University of Science & Technology, Clear Water Bay, Kowloon, Hong Kong, China; Fok Ying Tung Research Institute, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China; Hong Kong Branch of Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.
| |
Collapse
|
27
|
ter Heijne A, de Rink R, Liu D, Klok JBM, Buisman CJN. Bacteria as an Electron Shuttle for Sulfide Oxidation. ENVIRONMENTAL SCIENCE & TECHNOLOGY LETTERS 2018; 5:495-499. [PMID: 30135862 PMCID: PMC6097799 DOI: 10.1021/acs.estlett.8b00319] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Revised: 07/31/2018] [Accepted: 07/31/2018] [Indexed: 05/13/2023]
Abstract
Biological desulfurization under haloalkaliphilic conditions is a widely applied process, in which haloalkalophilic sulfide-oxidizing bacteria (SOB) oxidize dissolved sulfide with oxygen as the final electron acceptor. We show that these SOB can shuttle electrons from sulfide to an electrode, producing electricity. Reactor solutions from two different biodesulfurization installations were used, containing different SOB communities; 0.2 mM sulfide was added to the reactor solutions with SOB in absence of oxygen, and sulfide was removed from the solution. Subsequently, the reactor solutions with SOB, and the centrifuged reactor solutions without SOB, were transferred to an electrochemical cell, where they were contacted with an anode. Charge recovery was studied at different anode potentials. At an anode potential of +0.1 V versus Ag/AgCl, average current densities of 0.48 and 0.24 A/m2 were measured for the two reactor solutions with SOB. Current was negligible for reactor solutions without SOB. We postulate that these differences in current are related to differences in microbial community composition. Potential mechanisms for charge storage in SOB are proposed. The ability of SOB to shuttle electrons from sulfide to an electrode offers new opportunities for developing a more sustainable desulfurization process.
Collapse
Affiliation(s)
- Annemiek ter Heijne
- Sub-department
of Environmental Technology, Wageningen
University, Bornse Weilanden
9, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- E-mail: . Telephone: +31 317 483447
| | - Rieks de Rink
- Sub-department
of Environmental Technology, Wageningen
University, Bornse Weilanden
9, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- Paqell
B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
| | - Dandan Liu
- Sub-department
of Environmental Technology, Wageningen
University, Bornse Weilanden
9, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Johannes B. M. Klok
- Sub-department
of Environmental Technology, Wageningen
University, Bornse Weilanden
9, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- Paqell
B.V., Reactorweg 301, 3542 AD Utrecht, The Netherlands
- Wetsus,
Centre of Excellence for Sustainable Water Technology, Oostergoweg 9,
P.O. Box 1113, 8900 CC Leeuwarden, The Netherlands
| | - Cees J. N. Buisman
- Sub-department
of Environmental Technology, Wageningen
University, Bornse Weilanden
9, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- Wetsus,
Centre of Excellence for Sustainable Water Technology, Oostergoweg 9,
P.O. Box 1113, 8900 CC Leeuwarden, The Netherlands
| |
Collapse
|
28
|
Kalantari H, Nosrati M, Shojaosadati SA, Shavandi M. Investigation of transient forms of sulfur during biological treatment of spent caustic. ENVIRONMENTAL TECHNOLOGY 2018; 39:1597-1606. [PMID: 28554258 DOI: 10.1080/09593330.2017.1334707] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Accepted: 05/20/2017] [Indexed: 06/07/2023]
Abstract
In the present study, the production of various transient forms of sulfur during biological oxidation of sulfidic spent caustics under haloalkaline conditions in a stirred tank bioreactor is investigated. Also, the effects of abiotic aeration (chemical oxidation), dissolved oxygen (DO) concentration and sodium concentration on forms of sulfur during biological treatment are demonstrated. Thioalkalivibrio versutus strain was used for sulfide oxidation in spent caustic (SC). The aeration had an important effect on sulfide oxidation and its final products. At DO concentrations above 2 mg l-1, majority of sulfide was oxidized to sulfate. Maximum sulfide removal efficiency (%R) and yield of sulfate production [Formula: see text] was obtained in Na+ concentration ranging from 0.6 to 2 M. Abiotic aeration, which is the most important factor of production of thiosulfate, resulted in the formation of an undesired product-polysulfide. However, abiotic aeration can be used as a pretreatment to biological treatment. In the bioreactor the removal efficiency was obtained as 82.7% and various forms of sulfur such as polysulfide, biosulfur, thiosulfate and sulfate was observed during biological treatment of SC.
Collapse
Affiliation(s)
- Hamed Kalantari
- a Biotechnology Group, Faculty of Chemical Engineering , Tarbiat Modares University , Tehran , Iran
| | - Mohsen Nosrati
- a Biotechnology Group, Faculty of Chemical Engineering , Tarbiat Modares University , Tehran , Iran
| | - Seyed Abbas Shojaosadati
- a Biotechnology Group, Faculty of Chemical Engineering , Tarbiat Modares University , Tehran , Iran
| | - Mahmoud Shavandi
- b Environment and Biotechnology Group , Research Institute of Petroleum Industry , Tehran , Iran
| |
Collapse
|
29
|
Lavy A, Keren R, Yu K, Thomas BC, Alvarez-Cohen L, Banfield JF, Ilan M. A novel Chromatiales bacterium is a potential sulfide oxidizer in multiple orders of marine sponges. Environ Microbiol 2018; 20:800-814. [PMID: 29194919 PMCID: PMC5812793 DOI: 10.1111/1462-2920.14013] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 11/23/2017] [Accepted: 11/24/2017] [Indexed: 01/09/2023]
Abstract
Sponges are benthic filter feeders that play pivotal roles in coupling benthic-pelagic processes in the oceans that involve transformation of dissolved and particulate organic carbon and nitrogen into biomass. While the contribution of sponge holobionts to the nitrogen cycle has been recognized in past years, their importance in the sulfur cycle, both oceanic and physiological, has only recently gained attention. Sponges in general, and Theonella swinhoei in particular, harbour a multitude of associated microorganisms that could affect sulfur cycling within the holobiont. We reconstructed the genome of a Chromatiales (class Gammaproteobacteria) bacterium from a metagenomic sequence dataset of a T. swinhoei-associated microbial community. This relatively abundant bacterium has the metabolic capability to oxidize sulfide yet displays reduced metabolic potential suggestive of its lifestyle as an obligatory symbiont. This bacterium was detected in multiple sponge orders, according to similarities in key genes such as 16S rRNA and polyketide synthase genes. Due to its sulfide oxidation metabolism and occurrence in many members of the Porifera phylum, we suggest naming the newly described taxon Candidatus Porisulfidus.
Collapse
Affiliation(s)
- Adi Lavy
- School of Zoology, Faculty of Life Sciences, Tel-Aviv University, Israel
- Earth and Planetary Science, 369 McCone Hall, University of California, Berkeley, USA
| | - Ray Keren
- School of Zoology, Faculty of Life Sciences, Tel-Aviv University, Israel
- Department of Civil and Environmental Engineering, University of California, Berkeley, USA
| | - Ke Yu
- Department of Civil and Environmental Engineering, University of California, Berkeley, USA
| | - Brian C. Thomas
- Earth and Planetary Science, 369 McCone Hall, University of California, Berkeley, USA
| | - Lisa Alvarez-Cohen
- Department of Civil and Environmental Engineering, University of California, Berkeley, USA
| | - Jillian F. Banfield
- Earth and Planetary Science, 369 McCone Hall, University of California, Berkeley, USA
| | - Micha Ilan
- School of Zoology, Faculty of Life Sciences, Tel-Aviv University, Israel
| |
Collapse
|
30
|
Corteselli EM, Aitken MD, Singleton DR. Description of Immundisolibacter cernigliae gen. nov., sp. nov., a high-molecular-weight polycyclic aromatic hydrocarbon-degrading bacterium within the class Gammaproteobacteria, and proposal of Immundisolibacterales ord. nov. and Immundisolibacteraceae fam. nov. Int J Syst Evol Microbiol 2017; 67:925-931. [PMID: 27926817 DOI: 10.1099/ijsem.0.001714] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The bacterial strain TR3.2T was isolated from aerobic bioreactor-treated soil from a polycyclic aromatic hydrocarbon (PAH)-contaminated site in Salisbury, NC, USA. Strain TR3.2T was identified as a member of 'Pyrene Group 2' or 'PG2', a previously uncultivated cluster of organisms associated with the degradation of high-molecular-weight PAHs by stable-isotope probing. Based on its 16S rRNA gene sequence, the strain was classified as a member of the class Gammaproteobacteria but possessed only 90.5 % gene identity to its closest described relative, Methylococcus capsulatus strain Bath. Strain TR3.2T grew on the PAHs pyrene, phenanthrene, anthracene, benz[a]anthracene and fluorene, as well as the azaarene carbazole, and could additionally metabolize a limited number of organic acids. Optimal growth occurred aerobically under mesophilic temperature, neutral pH and low salinity conditions. Strain TR3.2T was catalase and oxidase positive. Predominant fatty acids were C17 : 0 cyclo and C16 : 0. Genomic G+C content of the single chromosome was 67.79 mol% as determined by complete genome sequencing. Due to the high sequence divergence from any cultivated species and its unique physiological properties compared to its closest relatives, strain TR3.2T is proposed as a representative of a novel order, family, genus and species within the class Gammaproteobacteria, for which the name Immundisolibacter cernigliae gen. nov., sp. nov. is proposed. The associated order and family are therefore proposed as Immundisolibacteralesord. nov. and Immundisolibacteraceaefam. nov. The type strain of the species is TR3.2T (=ATCC TSD-58T=DSM 103040T).
Collapse
Affiliation(s)
- Elizabeth M Corteselli
- Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC 27599-7431, USA
| | - Michael D Aitken
- Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC 27599-7431, USA
| | - David R Singleton
- Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC 27599-7431, USA
| |
Collapse
|
31
|
Thiele S, Richter M, Balestra C, Glöckner FO, Casotti R. Taxonomic and functional diversity of a coastal planktonic bacterial community in a river-influenced marine area. Mar Genomics 2017; 32:61-69. [DOI: 10.1016/j.margen.2016.12.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Revised: 12/22/2016] [Accepted: 12/28/2016] [Indexed: 01/19/2023]
|
32
|
Berben T, Overmars L, Sorokin DY, Muyzer G. Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes. Front Microbiol 2017; 8:254. [PMID: 28293216 PMCID: PMC5328954 DOI: 10.3389/fmicb.2017.00254] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Accepted: 02/07/2017] [Indexed: 12/21/2022] Open
Abstract
Thiocyanate is a C1 compound containing carbon, nitrogen, and sulfur. It is a (by)product in a number of natural and industrial processes. Because thiocyanate is toxic to many organisms, including humans, its removal from industrial waste streams is an important problem. Although a number of bacteria can use thiocyanate as a nitrogen source, only a few can use it as an electron donor. There are two distinct pathways to use thiocyanate: (i) the “carbonyl sulfide pathway,” which has been extensively studied, and (ii) the “cyanate pathway,” whose key enzyme, thiocyanate dehydrogenase, was recently purified and studied. Three species of Thioalkalivibrio, a group of haloalkaliphilic sulfur-oxidizing bacteria isolated from soda lakes, have been described as thiocyanate oxidizers: (i) Thioalkalivibrio paradoxus (“cyanate pathway”), (ii) Thioalkalivibrio thiocyanoxidans (“cyanate pathway”) and (iii) Thioalkalivibrio thiocyanodenitrificans (“carbonyl sulfide pathway”). In this study we provide a comparative genome analysis of these described thiocyanate oxidizers, with genomes ranging in size from 2.5 to 3.8 million base pairs. While focusing on thiocyanate degradation, we also analyzed the differences in sulfur, carbon, and nitrogen metabolism. We found that the thiocyanate dehydrogenase gene is present in 10 different Thioalkalivibrio strains, in two distinct genomic contexts/genotypes. The first genotype is defined by having genes for flavocytochrome c sulfide dehydrogenase upstream from the thiocyanate dehydrogenase operon (present in two strains including the type strain of Tv. paradoxus), whereas in the second genotype these genes are located downstream, together with two additional genes of unknown function (present in eight strains, including the type strains of Tv. thiocyanoxidans). Additionally, we found differences in the presence/absence of genes for various sulfur oxidation pathways, such as sulfide:quinone oxidoreductase, dissimilatory sulfite reductase, and sulfite dehydrogenase. One strain (Tv. thiocyanodenitrificans) lacks genes encoding a carbon concentrating mechanism and none of the investigated genomes were shown to contain known bicarbonate transporters. This study gives insight into the genomic variation of thiocyanate oxidizing bacteria and may lead to improvements in the application of these organisms in the bioremediation of industrial waste streams.
Collapse
Affiliation(s)
- Tom Berben
- Microbial Systems Ecology, Department of Aquatic Microbiology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam Amsterdam, Netherlands
| | - Lex Overmars
- Microbial Systems Ecology, Department of Aquatic Microbiology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam Amsterdam, Netherlands
| | - Dimitry Y Sorokin
- Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of SciencesMoscow, Russia; Department of Biotechnology, Delft University of TechnologyDelft, Netherlands
| | - Gerard Muyzer
- Microbial Systems Ecology, Department of Aquatic Microbiology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam Amsterdam, Netherlands
| |
Collapse
|
33
|
Roman P, Lipińska J, Bijmans MFM, Sorokin DY, Keesman KJ, Janssen AJH. Inhibition of a biological sulfide oxidation under haloalkaline conditions by thiols and diorgano polysulfanes. WATER RESEARCH 2016; 101:448-456. [PMID: 27295619 DOI: 10.1016/j.watres.2016.06.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2016] [Revised: 05/30/2016] [Accepted: 06/02/2016] [Indexed: 05/27/2023]
Abstract
A novel approach has been developed for the simultaneous description of reaction kinetics to describe the formation of polysulfide and sulfate anions from the biological oxidation of hydrogen sulfide (H2S) using a quick, sulfide-dependent respiration test. Next to H2S, thiols are commonly present in sour gas streams. We investigated the inhibition mode and the corresponding inhibition constants of six thiols and the corresponding diorgano polysulfanes on the biological oxidation of H2S. A linear relationship was found between the calculated IC50 values and the lipophilicity of the inhibitors. Moreover, a mathematical model was proposed to estimate the biomass activity in the absence and presence of sulfurous inhibitors. The biomass used in the respiration tests originated from a full-scale biodesulfurization reactor. A microbial community analysis of this biomass revealed that two groups of microorganism are abundant, viz. Ectothiorhodospiraceae and Piscirickettsiaceae.
Collapse
Affiliation(s)
- Pawel Roman
- Sub-department of Environmental Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands.
| | - Joanna Lipińska
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands; Faculty of Chemistry, Warsaw University of Technology, Noakowskiego St. 3, 00-664 Warsaw, Poland
| | - Martijn F M Bijmans
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands
| | - Dimitry Y Sorokin
- Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of Sciences, Prospect 60-let Oktyabrya 7/2, 117811 Moscow, Russia; Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands
| | - Karel J Keesman
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands; Biobased Chemistry & Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Albert J H Janssen
- Sub-department of Environmental Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands; Shell Technology Centre Bangalore, RMZ Centennial Campus B, Kundalahalli Main Road, 560 048 Bengaluru, India
| |
Collapse
|
34
|
Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)). Stand Genomic Sci 2016; 11:38. [PMID: 27274784 PMCID: PMC4891895 DOI: 10.1186/s40793-016-0162-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2015] [Accepted: 05/24/2016] [Indexed: 02/01/2023] Open
Abstract
Thioalkalimicrobium cyclicum Sorokin et al. 2002 is a member of the family Piscirickettsiaceae in the order Thiotrichales. The γ-proteobacterium belongs to the colourless sulfur-oxidizing bacteria isolated from saline soda lakes with stable alkaline pH, such as Lake Mono (California) and Soap Lake (Washington State). Strain ALM 1T is characterized by its adaptation to life in the oxic/anoxic interface towards the less saline aerobic waters (mixolimnion) of the stable stratified alkaline salt lakes. Strain ALM 1T is the first representative of the genus Thioalkalimicrobium whose genome sequence has been deciphered and the fourth genome sequence of a type strain of the Piscirickettsiaceae to be published. The 1,932,455 bp long chromosome with its 1,684 protein-coding and 50 RNA genes was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008.
Collapse
|
35
|
Mu T, Zhou J, Yang M, Xing J. Complete genome sequence of Thialkalivibrio versutus D301 isolated from Soda Lake in northern China, a typical strain with great ability to oxidize sulfide. J Biotechnol 2016; 227:21-22. [DOI: 10.1016/j.jbiotec.2016.04.019] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2016] [Accepted: 04/08/2016] [Indexed: 11/15/2022]
|
36
|
Tian RM, Sun J, Cai L, Zhang WP, Zhou GW, Qiu JW, Qian PY. The deep-sea glass sponge Lophophysema eversa harbours potential symbionts responsible for the nutrient conversions of carbon, nitrogen and sulfur. Environ Microbiol 2016; 18:2481-94. [PMID: 26637128 DOI: 10.1111/1462-2920.13161] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2015] [Accepted: 11/27/2015] [Indexed: 11/30/2022]
Abstract
Glass sponge (Hexactinellida, Porifera) is a special lineage because of its unique tissue organization and skeleton material. Structure and physiology of glass sponge have been extensively studied. However, our knowledge of the glass sponge-associated microbial community and of the interaction with the host is rather limited. Here, we performed genomic studies on the microbial community in the glass sponge Lophophysema eversa in seamount. The microbial community was dominated by an ammonia-oxidizing archaeum (AOA), a nitrite-oxidizing bacterium (NOB) and a sulfur-oxidizing bacterium (SOB), all of which were autotrophs. Genomic analysis on the AOA, NOB and SOB in the sponge revealed specific functional features of sponge-associated microorganisms in comparison with the closely related free-living relatives, including chemotaxis, phage defence, vitamin biosynthesis and nutrient uptake among others, which are related to ecological functions. The three autotrophs play essential roles in the cycles of carbon, nitrogen and sulfur in the microenvironment inside the sponge body, and they are considered to play symbiotic roles in the host as scavengers of toxic ammonia, nitrite and sulfide. Our study extends knowledge regarding the metabolism and the evolution of chemolithotrophs inside the invertebrate body.
Collapse
Affiliation(s)
- Ren-Mao Tian
- Divison of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong
| | - Jin Sun
- Divison of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong
| | - Lin Cai
- Divison of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong
| | - Wei-Peng Zhang
- Divison of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong
| | - Guo-Wei Zhou
- Divison of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong
| | - Jian-Wen Qiu
- Department of Biology, Hong Kong Baptist University, Hong Kong
| | - Pei-Yuan Qian
- Divison of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong
| |
Collapse
|
37
|
Roman P, Bijmans MFM, Janssen AJH. Influence of methanethiol on biological sulphide oxidation in gas treatment system. ENVIRONMENTAL TECHNOLOGY 2016; 37:1693-703. [PMID: 26652658 DOI: 10.1080/09593330.2015.1128001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Inorganic and organic sulphur compounds such as hydrogen sulphide (H2S) and thiols (RSH) are unwanted components in sour gas streams (e.g. biogas and refinery gases) because of their toxicity, corrosivity and bad smell. Biological treatment processes are often used to remove H2S at small and medium scales (<50 tons per day of H2S). Preliminarily research by our group focused on achieving maximum sulphur production from biological H2S oxidation in the presence of methanethiol. In this paper the underlying principles have been further studied by assessing the effect of methanethiol on the biological conversion of H2S under a wide range of redox conditions covering not only sulphur but also sulphate-producing conditions. Furthermore, our experiments were performed in an integrated system consisting of a gas absorber and a bioreactor in order to assess the effect of methanethiol on the overall gas treatment efficiency. This study shows that methanethiol inhibits the biological oxidation of H2S to sulphate by way of direct suppression of the cytochrome c oxidase activity in biomass, whereas the oxidation of H2S to sulphur was hardly affected. We estimated the kinetic parameters of biological H2S oxidation that can be used to develop a mathematical model to quantitatively describe the biodesulphurization process. Finally, it was found that methanethiol acts as a competitive inhibitor; therefore, its negative effect can be minimized by increasing the enzyme (biomass) concentration and the substrate (sulphide) concentration, which in practice means operating the biodesulphurization systems under low redox conditions.
Collapse
Affiliation(s)
- Pawel Roman
- a Sub-department of Environmental Technology , Wageningen , The Netherlands
- b Wetsus , European Centre of Excellence for Sustainable Water Technology , Leeuwarden , The Netherlands
| | - Martijn F M Bijmans
- b Wetsus , European Centre of Excellence for Sustainable Water Technology , Leeuwarden , The Netherlands
| | - Albert J H Janssen
- a Sub-department of Environmental Technology , Wageningen , The Netherlands
- c Shell Technology Centre Bangalore , Bengaluru , India
| |
Collapse
|
38
|
From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization. Sci Rep 2015; 5:12978. [PMID: 26268667 PMCID: PMC4534789 DOI: 10.1038/srep12978] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Accepted: 07/16/2015] [Indexed: 12/02/2022] Open
Abstract
Engineering microbial diversity to enhance soil functions may improve the success of direct revegetation in sulphidic mine tailings. Therefore, it is essential to explore how remediation and initial plant establishment can alter microbial communities, and, which edaphic factors control these changes under field conditions. A long-term revegetation trial was established at a Pb-Zn-Cu tailings impoundment in northwest Queensland. The control and amended and/or revegetated treatments were sampled from the 3-year-old trial. In total, 24 samples were examined using pyrosequencing of 16S rRNA genes and various chemical properties. The results showed that the microbial diversity was positively controlled by soil soluble Si and negatively controlled by soluble S, total Fe and total As, implying that pyrite weathering posed a substantial stress on microbial development in the tailings. All treatments were dominated by typical extremophiles and lithotrophs, typically Truepera, Thiobacillus, Rubrobacter; significant increases in microbial diversity, biomass and frequency of organotrophic genera (typically Nocardioides and Altererythrobacter) were detected in the revegetated and amended treatment. We concluded that appropriate phytostabilization options have the potential to drive the microbial diversity and community structure in the tailings toward those of natural soils, however, inherent environmental stressors may limit such changes.
Collapse
|
39
|
Roman P, Veltman R, Bijmans MFM, Keesman KJ, Janssen AJH. Effect of Methanethiol Concentration on Sulfur Production in Biological Desulfurization Systems under Haloalkaline Conditions. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2015; 49:9212-21. [PMID: 26154624 DOI: 10.1021/acs.est.5b01758] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Bioremoval of H2S from gas streams became popular in recent years because of high process efficiency and low operational costs. To expand the scope of these processes to gas streams containing volatile organic sulfur compounds, like thiols, it is necessary to provide new insights into their impact on overall biodesulfurization process. Published data on the effect of thiols on biodesulfurization processes are scarce. In this study, we investigated the effect of methanethiol on the selectivity for sulfur production in a bioreactor integrated with a gas absorber. This is the first time that the inhibition of biological sulfur formation by methanethiol is investigated. In our reactor system, inhibition of sulfur production started to occur at a methanethiol loading rate of 0.3 mmol L(-1) d(-1). The experimental results were also described by a mathematical model that includes recent findings on the mode of biomass inhibition by methanethiol. We also found that the negative effect of methanethiol can be mitigated by lowering the salinity of the bioreactor medium. Furthermore, we developed a novel approach to measure the biological activity by sulfide measurements using UV-spectrophotometry. On the basis of this measurement method, it is possible to accurately estimate the unknown kinetic parameters in the mathematical model.
Collapse
Affiliation(s)
- Pawel Roman
- †Sub-department of Environmental Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- ‡Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands
| | - René Veltman
- ‡Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands
| | - Martijn F M Bijmans
- ‡Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, The Netherlands
| | - Karel J Keesman
- †Sub-department of Environmental Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Albert J H Janssen
- †Sub-department of Environmental Technology, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
- ∥Shell Technology Centre Bangalore, RMZ Centennial Campus B, Kundalahalli Main Road, Bengaluru 560 048 India
| |
Collapse
|
40
|
Banciu HL, Muntyan MS. Adaptive strategies in the double-extremophilic prokaryotes inhabiting soda lakes. Curr Opin Microbiol 2015; 25:73-9. [PMID: 26025020 DOI: 10.1016/j.mib.2015.05.003] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2015] [Revised: 04/27/2015] [Accepted: 05/01/2015] [Indexed: 10/23/2022]
Abstract
Haloalkaliphiles are double extremophilic organisms thriving both at high salinity and alkaline pH. Although numerous haloalkaliphilic representatives have been identified among Archaea and Bacteria over the past 15 years, the adaptations underlying their prosperity at haloalkaline conditions are scarcely known. A multi-level adaptive strategy was proposed to occur in haloalkaliphilic organisms isolated from saline alkaline and soda environments including adjustments in the cell wall structure, plasma membrane lipid composition, membrane transport systems, bioenergetics, and osmoregulation. Isolation of chemolithoautotrophic sulfur-oxidizing γ-Proteobacteria from soda lakes allowed the elucidation of the structural and physiological differences between haloalkaliphilic (prefer NaCl) and natronophilic (prefer NaHCO3/Na2CO3, i.e. soda) microbes.
Collapse
Affiliation(s)
- Horia Leonard Banciu
- Institute for Interdisciplinary Research in Bio-Nano-Sciences, Molecular Biology Center, Babeş-Bolyai University, 400271 Cluj-Napoca, Romania; Department of Molecular Biology and Biotechnology, Faculty of Biology and Geology, Babeş-Bolyai University, 400006 Cluj-Napoca, Romania.
| | - Maria S Muntyan
- Lomonosov Moscow State University, Belozersky Institute of Physico-Chemical Biology, Moscow 119991, Russia
| |
Collapse
|
41
|
Walter MC, Öhrman C, Myrtennäs K, Sjödin A, Byström M, Larsson P, Macellaro A, Forsman M, Frangoulidis D. Genome sequence of Coxiella burnetii strain Namibia. Stand Genomic Sci 2014; 9:22. [PMID: 25593636 PMCID: PMC4286197 DOI: 10.1186/1944-3277-9-22] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Accepted: 11/17/2014] [Indexed: 11/28/2022] Open
Abstract
We present the whole genome sequence and annotation of the Coxiella burnetii strain Namibia. This strain was isolated from an aborting goat in 1991 in Windhoek, Namibia. The plasmid type QpRS was confirmed in our work. Further genomic typing placed the strain into a unique genomic group. The genome sequence is 2,101,438 bp long and contains 1,979 protein-coding and 51 RNA genes, including one rRNA operon. To overcome the poor yield from cell culture systems, an additional DNA enrichment with whole genome amplification (WGA) methods was applied. We describe a bioinformatics pipeline for improved genome assembly including several filters with a special focus on WGA characteristics.
Collapse
Affiliation(s)
- Mathias C Walter
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.,Department of Genome-Oriented Bioinformatics, Center of Life and Food Science Weihenstephan, Technische Universität München, Freising, Germany
| | - Caroline Öhrman
- CBRN Defence and Security, Swedish Defence Research Agency (FOI), Umeå, Sweden
| | - Kerstin Myrtennäs
- CBRN Defence and Security, Swedish Defence Research Agency (FOI), Umeå, Sweden
| | - Andreas Sjödin
- CBRN Defence and Security, Swedish Defence Research Agency (FOI), Umeå, Sweden
| | - Mona Byström
- CBRN Defence and Security, Swedish Defence Research Agency (FOI), Umeå, Sweden
| | - Pär Larsson
- CBRN Defence and Security, Swedish Defence Research Agency (FOI), Umeå, Sweden
| | - Anna Macellaro
- CBRN Defence and Security, Swedish Defence Research Agency (FOI), Umeå, Sweden
| | - Mats Forsman
- CBRN Defence and Security, Swedish Defence Research Agency (FOI), Umeå, Sweden
| | | |
Collapse
|
42
|
Sorokin DY, Berben T, Melton ED, Overmars L, Vavourakis CD, Muyzer G. Microbial diversity and biogeochemical cycling in soda lakes. Extremophiles 2014; 18:791-809. [PMID: 25156418 PMCID: PMC4158274 DOI: 10.1007/s00792-014-0670-9] [Citation(s) in RCA: 143] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2014] [Accepted: 06/26/2014] [Indexed: 01/26/2023]
Abstract
Soda lakes contain high concentrations of sodium carbonates resulting in a stable elevated pH, which provide a unique habitat to a rich diversity of haloalkaliphilic bacteria and archaea. Both cultivation-dependent and -independent methods have aided the identification of key processes and genes in the microbially mediated carbon, nitrogen, and sulfur biogeochemical cycles in soda lakes. In order to survive in this extreme environment, haloalkaliphiles have developed various bioenergetic and structural adaptations to maintain pH homeostasis and intracellular osmotic pressure. The cultivation of a handful of strains has led to the isolation of a number of extremozymes, which allow the cell to perform enzymatic reactions at these extreme conditions. These enzymes potentially contribute to biotechnological applications. In addition, microbial species active in the sulfur cycle can be used for sulfur remediation purposes. Future research should combine both innovative culture methods and state-of-the-art 'meta-omic' techniques to gain a comprehensive understanding of the microbes that flourish in these extreme environments and the processes they mediate. Coupling the biogeochemical C, N, and S cycles and identifying where each process takes place on a spatial and temporal scale could unravel the interspecies relationships and thereby reveal more about the ecosystem dynamics of these enigmatic extreme environments.
Collapse
Affiliation(s)
- Dimitry Y. Sorokin
- Winogradsky Institute of Microbiology, RAS, Moscow, Russia
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
| | - Tom Berben
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Emily Denise Melton
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Lex Overmars
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Charlotte D. Vavourakis
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Gerard Muyzer
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| |
Collapse
|
43
|
Tian RM, Wang Y, Bougouffa S, Gao ZM, Cai L, Bajic V, Qian PY. Genomic analysis reveals versatile heterotrophic capacity of a potentially symbiotic sulfur-oxidizing bacterium in sponge. Environ Microbiol 2014; 16:3548-61. [DOI: 10.1111/1462-2920.12586] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2014] [Revised: 07/24/2014] [Accepted: 07/24/2014] [Indexed: 11/30/2022]
Affiliation(s)
- Ren-Mao Tian
- Divison of Life Science; Hong Kong University of Science and Technology; Hong Kong
| | - Yong Wang
- Divison of Life Science; Hong Kong University of Science and Technology; Hong Kong
- Sanya Institute of Deep Sea Science and Engineering; Chinese Academy of Sciences; San Ya Hai Nan China
| | - Salim Bougouffa
- Computational Bioscience Research Center (CBRC); King Abdullah University of Science and Technology (KAUST); Thuwal Saudi Arabia
| | - Zhao-Ming Gao
- Divison of Life Science; Hong Kong University of Science and Technology; Hong Kong
- Sanya Institute of Deep Sea Science and Engineering; Chinese Academy of Sciences; San Ya Hai Nan China
| | - Lin Cai
- Divison of Life Science; Hong Kong University of Science and Technology; Hong Kong
| | - Vladimir Bajic
- Computational Bioscience Research Center (CBRC); King Abdullah University of Science and Technology (KAUST); Thuwal Saudi Arabia
| | - Pei-Yuan Qian
- Divison of Life Science; Hong Kong University of Science and Technology; Hong Kong
| |
Collapse
|
44
|
Klok JBM, de Graaff M, van den Bosch PLF, Boelee NC, Keesman KJ, Janssen AJH. A physiologically based kinetic model for bacterial sulfide oxidation. WATER RESEARCH 2013; 47:483-492. [PMID: 23177655 DOI: 10.1016/j.watres.2012.09.021] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2012] [Revised: 09/04/2012] [Accepted: 09/08/2012] [Indexed: 05/27/2023]
Abstract
In the biotechnological process for hydrogen sulfide removal from gas streams, a variety of oxidation products can be formed. Under natron-alkaline conditions, sulfide is oxidized by haloalkaliphilic sulfide oxidizing bacteria via flavocytochrome c oxidoreductase. From previous studies, it was concluded that the oxidation-reduction state of cytochrome c is a direct measure for the bacterial end-product formation. Given this physiological feature, incorporation of the oxidation state of cytochrome c in a mathematical model for the bacterial oxidation kinetics will yield a physiologically based model structure. This paper presents a physiologically based model, describing the dynamic formation of the various end-products in the biodesulfurization process. It consists of three elements: 1) Michaelis-Menten kinetics combined with 2) a cytochrome c driven mechanism describing 3) the rate determining enzymes of the respiratory system of haloalkaliphilic sulfide oxidizing bacteria. The proposed model is successfully validated against independent data obtained from biological respiration tests and bench scale gas-lift reactor experiments. The results demonstrate that the model is a powerful tool to describe product formation for haloalkaliphilic biomass under dynamic conditions. The model predicts a maximum S⁰ formation of about 98 mol%. A future challenge is the optimization of this bioprocess by improving the dissolved oxygen control strategy and reactor design.
Collapse
Affiliation(s)
- Johannes B M Klok
- Sub-department of Environmental Technology, Wageningen University, Bornse Weilanden 9, P.O. Box 17, 6700 AA Wageningen, The Netherlands.
| | | | | | | | | | | |
Collapse
|
45
|
Adaptation in Haloalkaliphiles and Natronophilic Bacteria. CELLULAR ORIGIN, LIFE IN EXTREME HABITATS AND ASTROBIOLOGY 2013. [DOI: 10.1007/978-94-007-6488-0_5] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
|
46
|
Klok JBM, van den Bosch PLF, Buisman CJN, Stams AJM, Keesman KJ, Janssen AJH. Pathways of sulfide oxidation by haloalkaliphilic bacteria in limited-oxygen gas lift bioreactors. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2012; 46:7581-6. [PMID: 22697609 DOI: 10.1021/es301480z] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Physicochemical processes, such as the Lo-cat and Amine-Claus process, are commonly used to remove hydrogen sulfide from hydrocarbon gas streams such as landfill gas, natural gas, and synthesis gas. Biodesulfurization offers environmental advantages, but still requires optimization and more insight in the reaction pathways and kinetics. We carried out experiments with gas lift bioreactors inoculated with haloalkaliphilic sulfide-oxidizing bacteria. At oxygen-limiting levels, that is, below an O(2)/H(2)S mole ratio of 1, sulfide was oxidized to elemental sulfur and sulfate. We propose that the bacteria reduce NAD(+) without direct transfer of electrons to oxygen and that this is most likely the main route for oxidizing sulfide to elemental sulfur which is subsequently oxidized to sulfate in oxygen-limited bioreactors. We call this pathway the limited oxygen route (LOR). Biomass growth under these conditions is significantly lower than at higher oxygen levels. These findings emphasize the importance of accurate process control. This work also identifies a need for studies exploring similar pathways in other sulfide oxidizers such as Thiobacillus bacteria.
Collapse
Affiliation(s)
- Johannes B M Klok
- Systems and Control group, Wageningen University, Bornse Weilanden 9, P.O. Box 17, 6700 AA Wageningen, The Netherlands.
| | | | | | | | | | | |
Collapse
|
47
|
Muyzer G, Sorokin DY, Mavromatis K, Lapidus A, Foster B, Sun H, Ivanova N, Pati A, D'haeseleer P, Woyke T, Kyrpides NC. Complete genome sequence of Thioalkalivibrio sp. K90mix. Stand Genomic Sci 2011; 5:341-55. [PMID: 22675584 PMCID: PMC3368412 DOI: 10.4056/sigs.2315092] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Abstract
Thioalkalivibrio sp. K90mix is an obligately chemolithoautotrophic, natronophilic sulfur-oxidizing bacterium (SOxB) belonging to the family Ectothiorhodospiraceae within the Gammaproteobacteria. The strain was isolated from a mixture of sediment samples obtained from different soda lakes located in the Kulunda Steppe (Altai, Russia) based on its extreme potassium carbonate tolerance as an enrichment method. Here we report the complete genome sequence of strain K90mix and its annotation. The genome was sequenced within the Joint Genome Institute Community Sequencing Program, because of its relevance to the sustainable removal of sulfide from wastewater and gas streams.
Collapse
Affiliation(s)
- Gerard Muyzer
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
- Department of Aquatic Microbiology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Dimitry Y. Sorokin
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
- Winogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia
| | | | - Alla Lapidus
- Joint Genome Institute, Walnut Creek, California, USA
| | - Brian Foster
- Joint Genome Institute, Walnut Creek, California, USA
| | - Hui Sun
- Joint Genome Institute, Walnut Creek, California, USA
| | | | - Amrita Pati
- Joint Genome Institute, Walnut Creek, California, USA
| | | | - Tanja Woyke
- Joint Genome Institute, Walnut Creek, California, USA
| | | |
Collapse
|
48
|
Sorokin DY, Muntyan MS, Panteleeva AN, Muyzer G. Thioalkalivibrio sulfidiphilus sp. nov., a haloalkaliphilic, sulfur-oxidizing gammaproteobacterium from alkaline habitats. Int J Syst Evol Microbiol 2011; 62:1884-1889. [PMID: 21984678 DOI: 10.1099/ijs.0.034504-0] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A moderately salt-tolerant and obligately alkaliphilic, chemolithoautotrophic sulfur-oxidizing bacterium, strain HL-EbGr7(T), was isolated from a full-scale bioreactor removing H(2)S from biogas under oxygen-limited conditions. Another strain, ALJ17, closely related to HL-EbGr7(T), was isolated from a Kenyan soda lake. Cells of the isolates were relatively long, slender rods, motile by a polar flagellum. Although both strains were obligately aerobic, micro-oxic conditions were preferred, especially at the beginning of growth. Chemolithoautotrophic growth was observed with sulfide and thiosulfate in a pH range of 8.0-10.5 (optimum at pH 10.0) and a salinity range of 0.2-1.5 M total Na(+) (optimum at 0.4 M). The genome sequence of strain HL-EbGr7(T) demonstrated the presence of genes encoding the reverse Dsr pathway and a truncated Sox pathway for sulfur oxidation and enzymes of the Calvin-Benson cycle of autotrophic CO(2) assimilation with ribulose-bisphosphate carboxylase/oxygenase (RuBisCO) type I. The dominant cellular fatty acids were C(18:1)ω7, C(16:0) and C(19:0) cyclo. Based on 16S rRNA gene sequencing, the two strains belonged to a single phylotype within the genus Thioalkalivibrio in the Gammaproteobacteria. Despite being related most closely to Thioalkalivibrio denitrificans, the isolates were unable to grow by denitrification. On the basis of phenotypic and phylogenetic analysis, the novel isolates are proposed to represent a novel species, Thioalkalivibrio sulfidiphilus sp. nov., with the type strain HL-EbGr7(T) ( = NCCB 100376(T) = UNIQEM U246(T)).
Collapse
Affiliation(s)
- Dimitry Y Sorokin
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands
- Winogradsky Institute of Microbiology, Russian Academy of Sciences, Prospect 60-let Oktyabrya 7/2, 117811 Moscow, Russia
| | - Maria S Muntyan
- Belozersky Institute of Physico-Chemical Biology, Moscow State University, Vorob'evy Gory, 119992 Moscow, Russia
| | - Anzhela N Panteleeva
- Bioengineering Centre, Russian Academy of Sciences, Prospect 60-let Oktyabrya 7/1, 117811 Moscow, Russia
| | - Gerard Muyzer
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands
| |
Collapse
|
49
|
Sorokin DY, Kuenen JG, Muyzer G. The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes. Front Microbiol 2011; 2:44. [PMID: 21747784 PMCID: PMC3128939 DOI: 10.3389/fmicb.2011.00044] [Citation(s) in RCA: 112] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2011] [Accepted: 02/25/2011] [Indexed: 11/13/2022] Open
Abstract
Soda lakes represent a unique ecosystem with extremely high pH (up to 11) and salinity (up to saturation) due to the presence of high concentrations of sodium carbonate in brines. Despite these double extreme conditions, most of the lakes are highly productive and contain a fully functional microbial system. The microbial sulfur cycle is among the most active in soda lakes. One of the explanations for that is high-energy efficiency of dissimilatory conversions of inorganic sulfur compounds, both oxidative and reductive, sufficient to cope with costly life at double extreme conditions. The oxidative part of the sulfur cycle is driven by chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacteria (SOB), which are unique for soda lakes. The haloalkaliphilic SOB are present in the surface sediment layer of various soda lakes at high numbers of up to 10(6) viable cells/cm(3). The culturable forms are so far represented by four novel genera within the Gammaproteobacteria, including the genera Thioalkalivibrio, Thioalkalimicrobium, Thioalkalispira, and Thioalkalibacter. The latter two were only found occasionally and each includes a single species, while the former two are widely distributed in various soda lakes over the world. The genus Thioalkalivibrio is the most physiologically diverse and covers the whole spectrum of salt/pH conditions present in soda lakes. Most importantly, the dominant subgroup of this genus is able to grow in saturated soda brines containing 4 M total Na(+) - a so far unique property for any known aerobic chemolithoautotroph. Furthermore, some species can use thiocyanate as a sole energy source and three out of nine species can grow anaerobically with nitrogen oxides as electron acceptor. The reductive part of the sulfur cycle is active in the anoxic layers of the sediments of soda lakes. The in situ measurements of sulfate reduction rates and laboratory experiments with sediment slurries using sulfate, thiosulfate, or elemental sulfur as electron acceptors demonstrated relatively high sulfate reduction rates only hampered by salt-saturated conditions. However, the highest rates of sulfidogenesis were observed not with sulfate, but with elemental sulfur followed by thiosulfate. Formate, but not hydrogen, was the most efficient electron donor with all three sulfur electron acceptors, while acetate was only utilized as an electron donor under sulfur-reducing conditions. The native sulfidogenic populations of soda lakes showed a typical obligately alkaliphilic pH response, which corresponded well to the in situ pH conditions. Microbiological analysis indicated a domination of three groups of haloalkaliphilic autotrophic sulfate-reducing bacteria belonging to the order Desulfovibrionales (genera Desulfonatronovibrio, Desulfonatronum, and Desulfonatronospira) with a clear tendency to grow by thiosulfate disproportionation in the absence of external electron donor even at salt-saturating conditions. Few novel representatives of the order Desulfobacterales capable of heterotrophic growth with volatile fatty acids and alcohols at high pH and moderate salinity have also been found, while acetate oxidation was a function of a specialized group of haloalkaliphilic sulfur-reducing bacteria, which belong to the phylum Chrysiogenetes.
Collapse
Affiliation(s)
- Dimitry Y Sorokin
- Winogradsky Institute of Microbiology, Russian Academy of Sciences Moscow, Russia
| | | | | |
Collapse
|