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Dip-Pen Nanolithography(DPN): from Micro/Nano-patterns to Biosensing. Chem Res Chin Univ 2021; 37:846-854. [PMID: 34376961 PMCID: PMC8339700 DOI: 10.1007/s40242-021-1197-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 06/06/2021] [Indexed: 02/02/2023]
Abstract
Dip-pen nanolithography is an emerging and attractive surface modification technique that has the capacity to directly and controllably write micro/nano-array patterns on diverse substrates. The superior throughput, resolution, and registration enable DPN an outstanding candidate for biological detection from the molecular level to the cellular level. Herein, we overview the technological evolution of DPN in terms of its advanced derivatives and DPN-enabled versatile sensing patterns featuring multiple compositions and structures for biosensing. Benefitting from uniform, reproducible, and large-area array patterns, DPN-based biosensors have shown high sensitivity, excellent selectivity, and fast response in target analyte detection and specific cellular recognition. We anticipate that DPN-based technologies could offer great potential opportunities to fabricate multiplexed, programmable, and commercial array-based sensing biochips.
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Ohlsson M, Hellmark T, Bengtsson AA, Theander E, Turesson C, Klint C, Wingren C, Ekstrand AI. Proteomic Data Analysis for Differential Profiling of the Autoimmune Diseases SLE, RA, SS, and ANCA-Associated Vasculitis. J Proteome Res 2020; 20:1252-1260. [PMID: 33356304 PMCID: PMC7872503 DOI: 10.1021/acs.jproteome.0c00657] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
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Early
and correct diagnosis of inflammatory rheumatic diseases
(IRD) poses a clinical challenge due to the multifaceted nature of
symptoms, which also may change over time. The aim of this study was
to perform protein expression profiling of four systemic IRDs, systemic
lupus erythematosus (SLE), ANCA-associated systemic vasculitis (SV),
rheumatoid arthritis (RA), and Sjögren’s syndrome (SS),
and healthy controls to identify candidate biomarker signatures for
differential classification. A total of 316 serum samples collected
from patients with SLE, RA, SS, or SV and from healthy controls were
analyzed using 394-plex recombinant antibody microarrays. Differential
protein expression profiling was examined using Wilcoxon signed rank
test, and condensed biomarker panels were identified using advanced
bioinformatics and state-of-the art classification algorithms to pinpoint
signatures reflecting each disease (raw data set available at https://figshare.com/s/3bd3848a28ef6e7ae9a9.). In this study, we were able to classify the included individual
IRDs with high accuracy, as demonstrated by the ROC area under the
curve (ROC AUC) values ranging between 0.96 and 0.80. In addition,
the groups of IRDs could be separated from healthy controls at an
ROC AUC value of 0.94. Disease-specific candidate biomarker signatures
and general autoimmune signature were identified, including several
deregulated analytes. This study supports the rationale of using multiplexed
affinity-based technologies to reflect the biological complexity of
autoimmune diseases. A multiplexed approach for decoding multifactorial
complex diseases, such as autoimmune diseases, will play a significant
role for future diagnostic purposes, essential to prevent severe organ-
and tissue-related damage.
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Affiliation(s)
- Mattias Ohlsson
- Computational Biology & Biological Physics, Department of Astronomy and Theoretical Physics, Lund University, Sölvegatan 14A, Lund SE-221 00, Sweden.,Center for Applied Intelligent Systems Research (CAISR), Halmstad University, Halmstad SE-301 18, Sweden
| | - Thomas Hellmark
- Department of Clinical Sciences Lund, Nephrology, Skåne University Hospital Lund, Lund University, Lund SE-221 85, Sweden
| | - Anders A Bengtsson
- Rheumatology, Department of Clinical Sciences, Lund, Lund University, Lund SE-221 00, Sweden.,Department of Rheumatology, Skåne University Hospital, Lund and Malmö SE-214 28, Sweden
| | - Elke Theander
- Rheumatology, Department of Clinical Sciences, Malmö, Lund University, Malmö SE-221 00, Sweden
| | - Carl Turesson
- Department of Rheumatology, Skåne University Hospital, Lund and Malmö SE-214 28, Sweden.,Rheumatology, Department of Clinical Sciences, Malmö, Lund University, Malmö SE-221 00, Sweden
| | | | - Christer Wingren
- Department of Immunotechnology, Lund University, Medicon Village, Scheelevägen 2, Lund SE-223 81, Sweden
| | - Anna Isinger Ekstrand
- Department of Immunotechnology, Lund University, Medicon Village, Scheelevägen 2, Lund SE-223 81, Sweden
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Thatikonda N, Delfani P, Jansson R, Petersson L, Lindberg D, Wingren C, Hedhammar M. Genetic fusion of single-chain variable fragments to partial spider silk improves target detection in micro- and nanoarrays. Biotechnol J 2015; 11:437-48. [PMID: 26470853 DOI: 10.1002/biot.201500297] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2015] [Revised: 08/18/2015] [Accepted: 10/07/2015] [Indexed: 12/20/2022]
Abstract
Immobilizing biomolecules with retained functionality and stability on solid supports is crucial for generation of sensitive immunoassays. However, upon use of conventional immobilization strategies, a major portion of the biomolecules (e.g. antibodies) frequently tends to lose their bioactivity. In this study, we describe a procedure to immobilize human single-chain variable fragment (scFv) via genetic fusion to partial spider silk, which have a high tendency to adhere to solid supports. Two scFvs, directed towards serum proteins, were genetically fused to partial spider silk proteins and expressed as silk fusion proteins in E. coli. Antigen binding ability of scFvs attached to a partial silk protein denoted RC was investigated using microarray analysis, whereas scFvs fused to the NC silk variant were examined using nanoarrays. Results from micro- and nanoarrays confirmed the functionality of scFvs attached to both RC and NC silk, and also for binding of targets in crude serum. Furthermore, the same amount of added scFv gives higher signal intensity when immobilized via partial spider silk compared to when immobilized alone. Together, the results suggest that usage of scFv-silk fusion proteins in immunoassays could improve target detection, in the long run enabling novel biomarkers to be detected in crude serum proteomes.
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Affiliation(s)
- Naresh Thatikonda
- Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Payam Delfani
- Department of Immunotechnology and CREATE Health, Lund University, Lund, Sweden
| | - Ronnie Jansson
- Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Linn Petersson
- Department of Immunotechnology and CREATE Health, Lund University, Lund, Sweden
| | | | - Christer Wingren
- Department of Immunotechnology and CREATE Health, Lund University, Lund, Sweden.
| | - My Hedhammar
- Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden. .,Division of Protein Technology, School of Biotechnology, KTH Royal Institute of Technology, Stockholm, Sweden.
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Screening hybridomas for anabolic androgenic steroids by steroid analog antigen microarray. Bioanalysis 2015; 7:1201-9. [PMID: 25973986 DOI: 10.4155/bio.15.67] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
BACKGROUND Currently, dozens of anabolic androgenic steroids (AAS) are forbidden in the World Anti-Doping Agency Prohibited List, however, despite extensive investigation, there are still lots of AAS without corresponding monoclonal antibodies. RESULTS A steroid analog antigen microarray made up of ten AAS was fabricated to screen the hybridoma and it was found an original unsuccessful clone turned out to be a candidate anti-boldenone antibody, without any cross-reactions with endogenous AAS or 44 different AAS standard reference materials tested. CONCLUSION Our findings suggested that steroid analog antigen microarray could be a promising tool to screen and characterize new applications of antibodies for structure analogs, and this also exhibits the potential to fast identify effective epitopes of hybridomas in a single assay.
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