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Number Cited by Other Article(s)
1
Xia Q, Fu Q, Shen C, Brenk R, Huang N. Assessing small molecule conformational sampling methods in molecular docking. J Comput Chem 2025;46:e27516. [PMID: 39476310 DOI: 10.1002/jcc.27516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Revised: 09/05/2024] [Accepted: 10/13/2024] [Indexed: 01/01/2025]
2
Folmsbee D, Koes DR, Hutchison GR. Systematic Comparison of Experimental Crystallographic Geometries and Gas-Phase Computed Conformers for Torsion Preferences. J Chem Inf Model 2023;63:7401-7411. [PMID: 38000780 PMCID: PMC10716907 DOI: 10.1021/acs.jcim.3c01278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 11/07/2023] [Accepted: 11/13/2023] [Indexed: 11/26/2023]
3
Foloppe N, Chen IJ. The reorganization energy of compounds upon binding to proteins, from dynamic and solvated bound and unbound states. Bioorg Med Chem 2021;51:116464. [PMID: 34798378 DOI: 10.1016/j.bmc.2021.116464] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 09/26/2021] [Accepted: 10/01/2021] [Indexed: 11/30/2022]
4
Tong J, Zhao S. Large-Scale Analysis of Bioactive Ligand Conformational Strain Energy by Ab Initio Calculation. J Chem Inf Model 2021;61:1180-1192. [PMID: 33630603 DOI: 10.1021/acs.jcim.0c01197] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
5
Hassan M, Coutsias EA. Protein secondary structure motifs: A kinematic construction. J Comput Chem 2021;42:271-292. [PMID: 33306852 DOI: 10.1002/jcc.26448] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 09/02/2020] [Accepted: 09/29/2020] [Indexed: 12/19/2022]
6
Hawkins PCD, Wlodek S. Decisions with Confidence: Application to the Conformation Sampling of Molecules in the Solid State. J Chem Inf Model 2020;60:3518-3533. [DOI: 10.1021/acs.jcim.0c00358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
7
Habgood M, James T, Heifetz A. Conformational Searching with Quantum Mechanics. Methods Mol Biol 2020;2114:207-229. [PMID: 32016896 DOI: 10.1007/978-1-0716-0282-9_14] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
8
Modelling the binding mode of macrocycles: Docking and conformational sampling. Bioorg Med Chem 2019;28:115143. [PMID: 31771798 DOI: 10.1016/j.bmc.2019.115143] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Revised: 09/12/2019] [Accepted: 09/25/2019] [Indexed: 11/21/2022]
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