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Yperman K, Papageorgiou AC, Merceron R, De Munck S, Bloch Y, Eeckhout D, Jiang Q, Tack P, Grigoryan R, Evangelidis T, Van Leene J, Vincze L, Vandenabeele P, Vanhaecke F, Potocký M, De Jaeger G, Savvides SN, Tripsianes K, Pleskot R, Van Damme D. Distinct EH domains of the endocytic TPLATE complex confer lipid and protein binding. Nat Commun 2021; 12:3050. [PMID: 34031427 PMCID: PMC8144573 DOI: 10.1038/s41467-021-23314-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Accepted: 04/22/2021] [Indexed: 01/07/2023] Open
Abstract
Clathrin-mediated endocytosis (CME) is the gatekeeper of the plasma membrane. In contrast to animals and yeasts, CME in plants depends on the TPLATE complex (TPC), an evolutionary ancient adaptor complex. However, the mechanistic contribution of the individual TPC subunits to plant CME remains elusive. In this study, we used a multidisciplinary approach to elucidate the structural and functional roles of the evolutionary conserved N-terminal Eps15 homology (EH) domains of the TPC subunit AtEH1/Pan1. By integrating high-resolution structural information obtained by X-ray crystallography and NMR spectroscopy with all-atom molecular dynamics simulations, we provide structural insight into the function of both EH domains. Both domains bind phosphatidic acid with a different strength, and only the second domain binds phosphatidylinositol 4,5-bisphosphate. Unbiased peptidome profiling by mass-spectrometry revealed that the first EH domain preferentially interacts with the double N-terminal NPF motif of a previously unidentified TPC interactor, the integral membrane protein Secretory Carrier Membrane Protein 5 (SCAMP5). Furthermore, we show that AtEH/Pan1 proteins control the internalization of SCAMP5 via this double NPF peptide interaction motif. Collectively, our structural and functional studies reveal distinct but complementary roles of the EH domains of AtEH/Pan1 in plant CME and connect the internalization of SCAMP5 to the TPLATE complex.
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Affiliation(s)
- Klaas Yperman
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Anna C Papageorgiou
- CEITEC-Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Romain Merceron
- Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
- VIB Center for Inflammation Research, Ghent, Belgium
| | - Steven De Munck
- Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
- VIB Center for Inflammation Research, Ghent, Belgium
| | - Yehudi Bloch
- Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
- VIB Center for Inflammation Research, Ghent, Belgium
| | - Dominique Eeckhout
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Qihang Jiang
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Pieter Tack
- Department of Chemistry, X-ray Microspectroscopy and Imaging - XMI Research Unit, Ghent University, Ghent, Belgium
| | - Rosa Grigoryan
- Department of Chemistry, Atomic & Mass Spectrometry - A&MS Research Unit, Ghent University, Ghent, Belgium
| | - Thomas Evangelidis
- CEITEC-Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Jelle Van Leene
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Laszlo Vincze
- Department of Chemistry, X-ray Microspectroscopy and Imaging - XMI Research Unit, Ghent University, Ghent, Belgium
| | - Peter Vandenabeele
- Department of Chemistry, X-ray Microspectroscopy and Imaging - XMI Research Unit, Ghent University, Ghent, Belgium
- Archaeometry Research Group, Department of Archaeology, Ghent University, Ghent, Belgium
| | - Frank Vanhaecke
- Department of Chemistry, Atomic & Mass Spectrometry - A&MS Research Unit, Ghent University, Ghent, Belgium
| | - Martin Potocký
- Institute of Experimental Botany, Academy of Sciences of the Czech Republic, Prague 6, Czech Republic
| | - Geert De Jaeger
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Savvas N Savvides
- Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.
- VIB Center for Inflammation Research, Ghent, Belgium.
| | | | - Roman Pleskot
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
- VIB Center for Plant Systems Biology, Ghent, Belgium.
- Institute of Experimental Botany, Academy of Sciences of the Czech Republic, Prague 6, Czech Republic.
| | - Daniel Van Damme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
- VIB Center for Plant Systems Biology, Ghent, Belgium.
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2
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Frescatada-Rosa M, Robatzek S, Kuhn H. Should I stay or should I go? Traffic control for plant pattern recognition receptors. CURRENT OPINION IN PLANT BIOLOGY 2015; 28:23-9. [PMID: 26344487 DOI: 10.1016/j.pbi.2015.08.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2015] [Revised: 08/10/2015] [Accepted: 08/14/2015] [Indexed: 05/17/2023]
Abstract
Plants employ cell surface-localised receptors to recognise potential invaders via perception of microbe-derived molecules. This is mediated by pattern recognition receptors (PRRs) that bind microbe-associated or damage-associated molecular patterns or perceive apoplastic effector proteins secreted by microorganisms. In either case, effective recognition and initiation of appropriate defence responses rely on a signalling competent pool of receptors at the cell surface. Maintenance of this pool of receptors at the plasma membrane is guaranteed by sorting of properly folded ligand-unbound and ligand-bound receptors via the secretory-endosomal network in an activation-dependent manner. Recent findings highlight that ligand-induced endocytosis is found across members of distinct PRR families suggesting a conserved mechanism by which PRRs and immunity is regulated.
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Affiliation(s)
| | - Silke Robatzek
- The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom.
| | - Hannah Kuhn
- The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom
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3
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Du J, Verzaux E, Chaparro-Garcia A, Bijsterbosch G, Keizer LCP, Zhou J, Liebrand TWH, Xie C, Govers F, Robatzek S, van der Vossen EAG, Jacobsen E, Visser RGF, Kamoun S, Vleeshouwers VGAA. Elicitin recognition confers enhanced resistance to Phytophthora infestans in potato. NATURE PLANTS 2015; 1:15034. [PMID: 27247034 DOI: 10.1038/nplants.2015.34] [Citation(s) in RCA: 75] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2014] [Accepted: 02/26/2015] [Indexed: 05/20/2023]
Abstract
Potato late blight, caused by the destructive Irish famine pathogen Phytophthora infestans, is a major threat to global food security(1,2). All late blight resistance genes identified to date belong to the coiled-coil, nucleotide-binding, leucine-rich repeat class of intracellular immune receptors(3). However, virulent races of the pathogen quickly evolved to evade recognition by these cytoplasmic immune receptors(4). Here we demonstrate that the receptor-like protein ELR (elicitin response) from the wild potato Solanum microdontum mediates extracellular recognition of the elicitin domain, a molecular pattern that is conserved in Phytophthora species. ELR associates with the immune co-receptor BAK1/SERK3 and mediates broad-spectrum recognition of elicitin proteins from several Phytophthora species, including four diverse elicitins from P. infestans. Transfer of ELR into cultivated potato resulted in enhanced resistance to P. infestans. Pyramiding cell surface pattern recognition receptors with intracellular immune receptors could maximize the potential of generating a broader and potentially more durable resistance to this devastating plant pathogen.
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Affiliation(s)
- Juan Du
- Wageningen UR Plant Breeding, Wageningen University and Research Centre, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands
- Key Laboratory of Horticultural Plant Biology, Ministry of Education National Center for Vegetable Improvement (Central China); Potato Engineering and Technology Research Center of Hubei Province, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Estelle Verzaux
- Wageningen UR Plant Breeding, Wageningen University and Research Centre, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands
| | | | - Gerard Bijsterbosch
- Wageningen UR Plant Breeding, Wageningen University and Research Centre, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands
| | | | - Ji Zhou
- The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
| | - Thomas W H Liebrand
- Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands
| | - Conghua Xie
- Key Laboratory of Horticultural Plant Biology, Ministry of Education National Center for Vegetable Improvement (Central China); Potato Engineering and Technology Research Center of Hubei Province, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Francine Govers
- Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands
| | - Silke Robatzek
- The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
| | - Edwin A G van der Vossen
- Wageningen UR Plant Breeding, Wageningen University and Research Centre, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands
| | - Evert Jacobsen
- Wageningen UR Plant Breeding, Wageningen University and Research Centre, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands
| | - Richard G F Visser
- Wageningen UR Plant Breeding, Wageningen University and Research Centre, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands
| | - Sophien Kamoun
- The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
| | - Vivianne G A A Vleeshouwers
- Wageningen UR Plant Breeding, Wageningen University and Research Centre, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands
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4
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Ben Khaled S, Postma J, Robatzek S. A moving view: subcellular trafficking processes in pattern recognition receptor-triggered plant immunity. ANNUAL REVIEW OF PHYTOPATHOLOGY 2015; 53:379-402. [PMID: 26243727 DOI: 10.1146/annurev-phyto-080614-120347] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
A significant challenge for plants is to induce localized defense responses at sites of pathogen attack. Therefore, host subcellular trafficking processes enable accumulation and exchange of defense compounds, which contributes to the plant on-site defenses in response to pathogen perception. This review summarizes our current understanding of the transport processes that facilitate immunity, the significance of which is highlighted by pathogens reprogramming membrane trafficking through host cell translocated effectors. Prominent immune-related cargos of plant trafficking pathways are the pattern recognition receptors (PRRs), which must be present at the plasma membrane to sense microbes in the apoplast. We focus on the dynamic localization of the FLS2 receptor and discuss the pathways that regulate receptor transport within the cell and their link to FLS2-mediated immunity. One emerging theme is that ligand-induced late endocytic trafficking is conserved across different PRR protein families as well as across different plant species.
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Affiliation(s)
- Sara Ben Khaled
- The Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH, United Kingdom;
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5
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Bar M, Avni A. Endosomal trafficking and signaling in plant defense responses. CURRENT OPINION IN PLANT BIOLOGY 2014; 22:86-92. [PMID: 25282589 DOI: 10.1016/j.pbi.2014.09.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Revised: 09/15/2014] [Accepted: 09/16/2014] [Indexed: 06/03/2023]
Abstract
Plant defense responses are initiated by ligand-receptor recognition. The receptor may contain a motif for endocytosis and endocytosis is important for defense signaling in some cases. Recently, endosomal trafficking during defense has begun to be elucidated. In some cases, defense receptors are internalized into early endosomes, recycled back to the plasma membrane (PM) on recycling endosomes, and targeted for degradation via the late endosome pathway in an ESCRT dependent manner. Endosomal signaling has been proposed for several receptors. Defense receptors have been shown to reside on endosomes during the signaling time window. Increasing the endosomal presence of a receptor can cause a concomitant increase in signaling, while abolishing the formation of endosomes after the receptor has already been internalized can cause signaling attenuation.
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Affiliation(s)
- Maya Bar
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture and The Otto Warburg Minerva Center for Agricultural Biotechnology, Hebrew University, Rehovot 76100, Israel
| | - Adi Avni
- Department of Molecular Biology and Ecology of Plants, Tel Aviv University, Tel Aviv 69978, Israel.
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6
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Bar M, Schuster S, Leibman M, Ezer R, Avni A. The function of EHD2 in endocytosis and defense signaling is affected by SUMO. PLANT MOLECULAR BIOLOGY 2014; 84:509-18. [PMID: 24154852 DOI: 10.1007/s11103-013-0148-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2013] [Accepted: 10/16/2013] [Indexed: 06/02/2023]
Abstract
Post-translational modification of target proteins by the small ubiquitin-like modifier protein (SUMO) regulates many cellular processes. SUMOylation has been shown to regulate cellular localization and function of a variety of proteins, in some cases affecting nuclear import or export. We have previously characterized two EHDs (EH domain containing proteins) in Arabidospis and showed their involvement in plant endocytosis. AtEHD2 has an inhibitory effect on endocytosis of transferrin, FM-4-64, and the leucine rich repeat receptor like protein LeEix2, an effect that requires and intact coiled-coil domain. Inhibition of endocytosis of LeEix2 by EHD2 is effective in inhibiting defense responses mediated by the LeEix2 receptor in response to its ligand EIX. In the present work we demonstrate that SUMOylation of EHD2 appears to be required for EHD2-induced inhibition of LeEix2 endocytosis. Indeed, we found that a mutant form of EHD2, possessing a defective SUMOylation site, has an increased nuclear abundance, can no longer be SUMOylated and is no longer effective in inhibiting LeEix2 endocytosis or defense signaling in response to EIX.
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Affiliation(s)
- Maya Bar
- Department of Molecular Biology and Ecology of Plants, Tel-Aviv University, 69978, Tel-Aviv, Israel
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7
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Tintor N, Saijo Y. ER-mediated control for abundance, quality, and signaling of transmembrane immune receptors in plants. FRONTIERS IN PLANT SCIENCE 2014; 5:65. [PMID: 24616730 PMCID: PMC3933923 DOI: 10.3389/fpls.2014.00065] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2014] [Accepted: 02/07/2014] [Indexed: 05/03/2023]
Abstract
Plants recognize a wide range of microbes with cell-surface and intracellular immune receptors. Transmembrane pattern recognition receptors (PRRs) initiate immune responses upon recognition of cognate ligands characteristic of microbes or aberrant cellular states, designated microbe-associated molecular patterns or danger-associated molecular patterns (DAMPs), respectively.Pattern-triggered immunity provides a first line of defense that restricts the invasion and propagation of both adapted and non-adapted pathogens. Receptor kinases (RKs) and receptor-like proteins (RLPs) with an extracellular leucine-rich repeat or lysine-motif (LysM) domain are extensively used as PRRs. The correct folding of the extracellular domain of these receptors is under quality control (QC) in the endoplasmic reticulum (ER), which thus provides a critical step in plant immunity. Genetic and structural insight suggests that ERQC regulates not only the abundance and quality of transmembrane receptors but also affects signal sorting between multi-branched pathways downstream of the receptor. However, ERQC dysfunction can also positively stimulate plant immunity, possibly through cell death and DAMP signaling pathways.
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Affiliation(s)
- Nico Tintor
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding ResearchCologne, Germany
| | - Yusuke Saijo
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding ResearchCologne, Germany
- Laboratory of Plant Immunity, Graduate School of Biological Sciences, Nara Institute of Science and TechnologyIkoma, Japan
- Japan Science and Technology, Precursory Research for Embryonic Science and TechnologyKawaguchi, Japan
- *Correspondence: Yusuke Saijo, Laboratory of Plant Immunity, Graduate School of Biological Sciences, Nara Institute of Science and Technology, 630-0192 Ikoma, Japan e-mail:
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8
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Bar M, Sharfman M, Avni A. LeEix1 functions as a decoy receptor to attenuate LeEix2 signaling. PLANT SIGNALING & BEHAVIOR 2011; 6:455-7. [PMID: 21364318 PMCID: PMC3142438 DOI: 10.4161/psb.6.3.14714] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2011] [Accepted: 01/04/2011] [Indexed: 05/20/2023]
Abstract
The receptors for the fungal elicitor EIX (LeEix1 and LeEix2) belong to a class of leucine-rich repeat cell-surface glycoproteins with a signal for receptor-mediated endocytosis. Both receptors are able to bind the EIX elicitor while only the LeEix2 receptor mediates defense responses. We show that LeEix1 acts as a decoy receptor and attenuates EIX induced internalization and signaling of the LeEix2 receptor. We demonstrate that BAK1 binds LeEix1 but not LeEix2. In plants where BAK1 was silenced, LeEix1 was no longer able to attenuate plant responses to EIX, indicating that BAK1 is required for this attenuation. We suggest that LeEix1 functions as a decoy receptor for LeEix2, a function which requires the kinase activity of BAK1.
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Affiliation(s)
- Maya Bar
- Tel Aviv University, Plant Sciences, Haim Levanon, Tel Aviv, Israel
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9
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Leborgne-Castel N, Adam T, Bouhidel K. Endocytosis in plant-microbe interactions. PROTOPLASMA 2010; 247:177-93. [PMID: 20814704 DOI: 10.1007/s00709-010-0195-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2010] [Accepted: 08/04/2010] [Indexed: 05/10/2023]
Abstract
Plants encounter throughout their life all kinds of microorganisms, such as bacteria, fungi, or oomycetes, with either friendly or unfriendly intentions. During evolution, plants have developed a wide range of defense mechanisms against attackers. In return, adapted microbes have developed strategies to overcome the plant lines of defense, some of these microbes engaging in mutualistic or parasitic endosymbioses. By sensing microbe presence and activating signaling cascades, the plasma membrane through its dynamics plays a crucial role in the ongoing molecular dialogue between plants and microbes. This review describes the contribution of endocytosis to different aspects of plant-microbe interactions, microbe recognition and development of a basal immune response, and colonization of plant cells by endosymbionts. The putative endocytic routes for the entry of microbe molecules or microbes themselves are explored with a special emphasis on clathrin-mediated endocytosis. Finally, we evaluate recent findings that suggest a link between the compartmentalization of plant plasma membrane into microdomains and endocytosis.
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Affiliation(s)
- Nathalie Leborgne-Castel
- UMR Plante-Microbe-Environnement 1088 INRA/5184 CNRS/Université de Bourgogne, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France.
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Bar M, Sharfman M, Ron M, Avni A. BAK1 is required for the attenuation of ethylene-inducing xylanase (Eix)-induced defense responses by the decoy receptor LeEix1. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010; 63:791-800. [PMID: 20561260 DOI: 10.1111/j.1365-313x.2010.04282.x] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Elicitor recognition plays a key role in the reaction of plants to pathogens and the induction of plant defense responses. Furthermore, plant-microbe interactions involve numerous regulatory systems essential for plant defense against pathogens. Ethylene-inducing xylanase (Eix) is a potent elicitor of plant defense responses in specific cultivars of tobacco (Nicotiana tabacum) and tomato (Solanum lycopersicum). The Eix receptors (LeEix1 and LeEix2) belong to a superclade of leucine-rich repeat receptor-like proteins (RLP) with a signal for receptor-mediated endocytosis, which was shown to be essential for proper induction of defense responses. Both receptors are able to bind Eix, while only LeEix2 mediates defense responses. Here we demonstrate that LeEix1 heterodimerizes with LeEix2 upon application of the Eix elicitor. We show that LeEix1 attenuates Eix-induced internalization and signaling of the LeEix2 receptor. Furthermore, we demonstrate, using yeast two-hybrid and in planta bimolecular fluorescence complementation assays, that the brassinosteroid co-receptor, BAK1, binds LeEix1 but not LeEix2. In BAK1-silenced plants, LeEix1 was no longer able to attenuate plant responses to Eix, indicating that BAK1 is required for this attenuation. We suggest that LeEix1 functions as a decoy receptor for LeEix2, a function which requires BAK1.
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Affiliation(s)
- Maya Bar
- Department of Plant Sciences, Tel-Aviv University, Tel-Aviv, Israel
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