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Dynamic Variations in Rumen Fermentation Characteristics and Bacterial Community Composition during In Vitro Fermentation. FERMENTATION-BASEL 2022. [DOI: 10.3390/fermentation8060276] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
This study aimed to explore the dynamic variations of rumen fermentation characteristics and bacterial community composition during a 24 h in vitro fermentation. A total of twenty-three samples were collected from original rumen fluid (ORF, n = 3), fermentation at 12 h (R12, n = 10), and fermentation at 24 h (R24, n = 10). Results showed that gas production, concentrations of microbial crude protein, ammonia nitrogen, and individual volatile fatty acids (VFA), as well as total VFA and branched-chain VFA concentrations, were higher in R24 when compared with R12 (p < 0.05). However, no significant differences were observed in acetate to propionate ratio and fermentation efficiency between R12 and R24 (p > 0.05). Bacterial diversity analysis found that Shannon index and Simpson index were higher in R24 (p < 0.05), and obvious clusters were observed in rumen bacterial community between R12 and R24. Taxonomic analysis at the phylum level showed that the abundances of Proteobacteria and Fibrobacteres were higher in R12 than that in R24, and inverse results were observed in Bacteroidetes, Firmicutes, Cyanobacteria, Verrucomicrobia, Lentisphaerae, and Synergistetes abundances. Taxonomic analysis at the genus level revealed that the abundances of Rikenellaceae RC9 gut group, Succiniclasticum, Prevotellaceae UCG-003, Christensenellaceae R-7 group, Ruminococcaceae UCG-002, Veillonellaceae UCG-001, and Ruminococcaceae NK4A214 group were higher in R24, whereas higher abundances of Succinivibrionaceae UCG-002, Ruminobacter, and Fibrobacter, were found in R12. Correlation analysis revealed the negative associations between gas production and abundances of Proteobacteria, Succinivibrionaceae UCG-002, and Ruminobacter. Moreover, the abundances of Firmicutes, Rikenellaceae RC9 gut group, Christensenellaceae R-7 group, and Ruminococcaceae UCG-002 positively correlated with VFA production. These results indicate that both rumen fermentation characteristics and bacterial community composition were dynamic during in vitro fermentation, whereas the fermentation pattern, efficiency, and bacterial richness remained similar. This study provide insight into the dynamics of rumen fermentation characteristics and bacterial composition during in vitro fermentation. This study may also provide a reference for decision-making for the sampling time point when conducting an in vitro fermentation for bacterial community investigation.
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Angulo-Montoya C, Ruiz Barrera O, Castillo-Castillo Y, Marrero-Rodriguez Y, Elias-Iglesias A, Estrada-Angulo A, Contreras-Pérez G, Arzola-Álvarez C, Carlos-Valdez L. Growth of Candida norvegensis (strain Levazoot 15) with different energy, nitrogen, vitamin, and micromineral sources. Braz J Microbiol 2019; 50:533-537. [PMID: 30637628 DOI: 10.1007/s42770-018-0015-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Accepted: 10/10/2018] [Indexed: 11/29/2022] Open
Abstract
To examine the growth of Candida norvegensis (strain Levazoot 15), four experiments were conducted with different sources of energy, nitrogen, vitamins, and microminerals. Optical density was used as an indirect measure of strain growth in a fully randomized factorial design, in which principal factor A was the source of energy, nitrogen, vitamins, or microminerals and principal factor B was the measurement time point (0, 20, or 40 h). The results showed that the yeast strain used glucose (primarily sucrose and lactose) as the energy source and tryptone as the nitrogen source. The addition of B-complex vitamins or microminerals was not necessary for strain growth. It is concluded that the strain Levazoot 15 preferentially utilizes glucose as a source of energy, tryptone as a source of nitrogen and manganese as a mineral source, and that no vitamin source was necessary for growth.
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Affiliation(s)
- C Angulo-Montoya
- Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Chihuahua, Mexico
| | - O Ruiz Barrera
- Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Chihuahua, Mexico
| | - Y Castillo-Castillo
- Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Chihuahua, Mexico.
| | | | | | - A Estrada-Angulo
- Facultad de Medicina Veterinaria y Zootecnia, Universidad Autónoma de Sinaloa, Culiacán, Sinaloa, Mexico
| | - G Contreras-Pérez
- Facultad de Medicina Veterinaria y Zootecnia, Universidad Autónoma de Sinaloa, Culiacán, Sinaloa, Mexico
| | - C Arzola-Álvarez
- Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Chihuahua, Mexico
| | - L Carlos-Valdez
- Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Chihuahua, Mexico
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McCann JC, Elolimy AA, Loor JJ. Rumen Microbiome, Probiotics, and Fermentation Additives. Vet Clin North Am Food Anim Pract 2017; 33:539-553. [PMID: 28764865 DOI: 10.1016/j.cvfa.2017.06.009] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
Abstract
Fermentation of a variety of feedstuffs by the ruminal microbiome is the distinctive feature of the ruminant digestive tract. The host derives energy and nutrients from microbiome activity; these organisms are essential to survival. Advances in DNA sequencing and bioinformatics have redefined the rumen microbial community. Current research seeks to connect our understanding of the rumen microbiome with nutritional strategies in ruminant livestock systems and their associated digestive disorders. These efforts align with a growing number of products designed to improve ruminal fermentation to benefit the overall efficiency of ruminant livestock production and health.
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Affiliation(s)
- Joshua C McCann
- Department of Animal Sciences, Division of Nutritional Sciences, University of Illinois, 1207 West Gregory Drive, Urbana, IL 61801, USA.
| | - Ahmed A Elolimy
- Department of Animal Sciences, Division of Nutritional Sciences, University of Illinois, 1207 West Gregory Drive, Urbana, IL 61801, USA
| | - Juan J Loor
- Department of Animal Sciences, Division of Nutritional Sciences, University of Illinois, 1207 West Gregory Drive, Urbana, IL 61801, USA.
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Castillo-Castillo Y, Ruiz-Barrera O, Burrola-Barraza ME, Marrero-Rodriguez Y, Salinas-Chavira J, Angulo-Montoya C, Corral-Luna A, Arzola-Alvarez C, Itza-Ortiz M, Camarillo J. Isolation and characterization of yeasts from fermented apple bagasse as additives for ruminant feeding. Braz J Microbiol 2016; 47:889-895. [PMID: 27520528 PMCID: PMC5052383 DOI: 10.1016/j.bjm.2016.07.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2015] [Accepted: 03/06/2016] [Indexed: 10/26/2022] Open
Abstract
Solid-state fermentation can be used to produce feeds for ruminants, which can provide an enriched population of yeasts to improve ruminal fermentation. Fermentation of apple bagasse was performed to obtain a yeast-rich product, with the objective of isolating, identifying, and characterizing yeast strains and testing their capability to enhance in vitro ruminal fermentation of fibrous feeds. Yeasts were isolated from apple bagasse fermented under in vitro conditions, using rumen liquor obtained from cannulated cows and alfalfa as a fibrous substrate. A total of 16 new yeast strains were isolated and identified by biochemical and molecular methods. The strains were designated Levazot, followed by the isolate number. Their fermentative capacity was assessed using an in vitro gas production method. Strain Levazot 15 (Candida norvegensis) showed the greatest increase in gas production (p<0.05) compared with the yeast-free control and positively affected in vitro ruminal fermentation parameters of alfalfa and oat straw. Based on these results, it was concluded that the Levazot 15 yeast strain could be potentially used as an additive for ruminants consuming high-fiber diets. However, further studies of effects of these additives on rumen digestion, metabolism, and productive performance of ruminants are required.
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Affiliation(s)
- Y Castillo-Castillo
- Universidad Autonoma de Cd. Juarez, Division Multidisciplinaria, Departamento de Medicina Veterinaria, Nuevo Casas Grandes, Mexico
| | - O Ruiz-Barrera
- Universidad Autonoma de Chihuahua, Facultad de Zootecnia y Ecologia, Chihuahua, Mexico.
| | - M E Burrola-Barraza
- Universidad Autonoma de Chihuahua, Facultad de Zootecnia y Ecologia, Chihuahua, Mexico
| | | | - J Salinas-Chavira
- Universidad Autonoma de Tamaulipas, Facultad de Medicina Veterinaria y Zootecnia, Cd. Victoria, Mexico
| | - C Angulo-Montoya
- Universidad Autonoma de Sinaloa, Culiacan, Facultad de Medicina Veterinaria y Zootecnia, Sin, Mexico
| | - A Corral-Luna
- Universidad Autonoma de Chihuahua, Facultad de Zootecnia y Ecologia, Chihuahua, Mexico
| | - C Arzola-Alvarez
- Universidad Autonoma de Chihuahua, Facultad de Zootecnia y Ecologia, Chihuahua, Mexico
| | - M Itza-Ortiz
- Universidad Autonoma de Cd. Juarez, Division Multidisciplinaria, Departamento de Medicina Veterinaria, Nuevo Casas Grandes, Mexico
| | - J Camarillo
- Universidad Autonoma de Chihuahua, Facultad de Zootecnia y Ecologia, Chihuahua, Mexico
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