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Lee D, Lee J, Heo KN, Kwon K, Moon Y, Lim D, Lee KT, Kim J. Population analysis of the Korean native duck using whole-genome sequencing data. BMC Genomics 2020; 21:554. [PMID: 32787779 PMCID: PMC7430827 DOI: 10.1186/s12864-020-06933-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 07/20/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Advances in next-generation sequencing technologies have provided an opportunity to perform population-level comparative genomic analysis to discover unique genomic characteristics of domesticated animals. Duck is one of the most popular domesticated waterfowls, which is economically important as a source of meat, eggs, and feathers. The objective of this study is to perform population and functional analyses of Korean native duck, which has a distinct meat flavor and texture phenotype, using whole-genome sequencing data. To study the distinct genomic features of Korean native duck, we conducted population-level genomic analysis of 20 Korean native ducks together with 15 other duck breeds. RESULTS A total of 15.56 million single nucleotide polymorphisms were detected in Korean native duck. Based on the unique existence of non-synonymous single nucleotide polymorphisms in Korean native duck, a total of 103 genes related to the unique genomic characteristics of Korean native duck were identified in comparison with 15 other duck breeds, and their functions were investigated. The nucleotide diversity and population structures among the used duck breeds were then compared, and their phylogenetic relationship was analyzed. Finally, highly differentiated genomic regions among Korean native duck and other duck breeds were identified, and functions of genes in those regions were examined. CONCLUSIONS This is the first study to compare the population of Korean native duck with those of other duck breeds by using whole-genome sequencing data. Our findings can be used to expand our knowledge of genomic characteristics of Korean native duck, and broaden our understanding of duck breeds.
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Affiliation(s)
- Daehwan Lee
- Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea
| | - Jongin Lee
- Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea
| | - Kang-Neung Heo
- National Institute of Animal Science, Wanju, 55365, Republic of Korea
| | - Kisang Kwon
- Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea
| | - Youngbeen Moon
- Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea
| | - Dajeong Lim
- National Institute of Animal Science, Wanju, 55365, Republic of Korea
| | - Kyung-Tai Lee
- National Institute of Animal Science, Wanju, 55365, Republic of Korea
| | - Jaebum Kim
- Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
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Kokoszyński D, Wasilewski R, Stęczny K, Kotowicz M, Hrnčar C, Arpášová H. Carcass composition and selected meat quality traits of Pekin ducks from genetic resources flocks. Poult Sci 2019; 98:3029-3039. [DOI: 10.3382/ps/pez073] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Accepted: 01/30/2019] [Indexed: 11/20/2022] Open
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Jiang G, Li C, Huang X, Zhang X, Hu Y, Wang X, Wu D, Dai Q. The Effects of Threonine on Performance Parameters, Carcass Traits, Visceral Organ Indices and Serum Biochemical Parameters of Linwu Ducks, Aged 4 to 8 Weeks. BRAZILIAN JOURNAL OF POULTRY SCIENCE 2018. [DOI: 10.1590/1806-9061-2017-0614] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- G Jiang
- Chinese Academy of Agricultural Sciences, P. R. China; Hunan Institute of Animal Science and Veterinary Medicine; Hunan Co-Innovation Center of Animal Production Safety, China
| | - C Li
- Hunan Institute of Animal Science and Veterinary Medicine; Hunan Co-Innovation Center of Animal Production Safety, China
| | - X Huang
- Hunan Institute of Animal Science and Veterinary Medicine; Hunan Co-Innovation Center of Animal Production Safety, China
| | - X Zhang
- Hunan Institute of Animal Science and Veterinary Medicine; Hunan Co-Innovation Center of Animal Production Safety, China
| | - Y Hu
- Hunan Co-Innovation Center of Animal Production Safety, China
| | - X Wang
- Hunan Institute of Animal Science and Veterinary Medicine; Hunan Co-Innovation Center of Animal Production Safety, China
| | - D Wu
- Chinese Academy of Agricultural Sciences, P. R. China
| | - Q Dai
- Chinese Academy of Agricultural Sciences, P. R. China; Hunan Institute of Animal Science and Veterinary Medicine; Hunan Co-Innovation Center of Animal Production Safety, China
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Yoo J, Yi YJ, Wickramasuriya SS, Kim E, Shin TK, Cho HM, Kim N, Heo JM. Evaluation of sulphur amino acid requirement of male Korean native ducklings from hatch to 21 day of age. Br Poult Sci 2017; 58:272-277. [PMID: 28100065 DOI: 10.1080/00071668.2017.1280722] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
1. A dose-response experiment was conducted with male Korean native ducklings (KND) to evaluate the total sulphur amino acid (TSAA) requirement from hatch to 21 d of age. 2. A completely randomised design with 7 dietary TSAA concentrations (0.62%, 0.65%, 0.68%, 0.71%, 0.74%, 0.77% and 0.80%) were used with 6 replications per treatment. 3. Body weight (BW) and feed intake were measured weekly to calculate average daily gain (ADG), average daily feed intake (ADFI) and feed conversion ratio (FCR). One duckling per pen (n = 6) was killed by cervical dislocation to weigh empty body and drumsticks at the conclusion of experiment. 4. BW was improved significantly with increasing TSAA content, in a non-linear manner. A significant decrease of FCR was shown with increasing TSAA contents. TSAA requirement was determined by taking a mean value after fitting the data to both a linear-plateau and a quadratic-plateau model. Estimated TSAA requirements were 0.70%, 0.70%, 0.66% and 0.70% for the maximum BW, ADG and ADFI and for the minimum FCR, respectively. Increasing TSAA content improved quantity of full body weight (FBW), empty body weight (EBW) and drumstick weight (DSW), but there was no effect on proportion of DSW in relation to EBW and proportion of EBW to FBW. 5. In conclusion, the growth of male KND during 1 to 21 d of age was improved with increasing TSAA content, suggesting optimal TSAA requirements estimated by two analysis models.
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Affiliation(s)
- J Yoo
- a Department of Animal Science and Biotechnology , Chungnam National University , Daejeon 34134 , South Korea
| | - Y J Yi
- b Division of Biotechnology , Chonbuk National University , Iksan 54596 , South Korea
| | - S S Wickramasuriya
- a Department of Animal Science and Biotechnology , Chungnam National University , Daejeon 34134 , South Korea
| | - E Kim
- a Department of Animal Science and Biotechnology , Chungnam National University , Daejeon 34134 , South Korea
| | - T K Shin
- a Department of Animal Science and Biotechnology , Chungnam National University , Daejeon 34134 , South Korea
| | - H M Cho
- a Department of Animal Science and Biotechnology , Chungnam National University , Daejeon 34134 , South Korea
| | - N Kim
- a Department of Animal Science and Biotechnology , Chungnam National University , Daejeon 34134 , South Korea
| | - J M Heo
- a Department of Animal Science and Biotechnology , Chungnam National University , Daejeon 34134 , South Korea
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Hwang JW, Cheong SH, Kim YS, Lee JW, You BI, Moon SH, Jeon BT, Park PJ. Effects of dietary supplementation of oriental herbal medicine residue and methyl sulfonyl methane on the growth performance and meat quality of ducks. ANIMAL PRODUCTION SCIENCE 2017. [DOI: 10.1071/an15134] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The present study was conducted to determine the effect of supplementation with oriental herbal medicine residue (OHMR) and methyl sulfonyl methane (MSM) on the growth performance and meat quality of ducks during a 42-day feeding period. In total, 270 Cherry Valley male ducklings were fed diets supplemented with 0.03% MSM alone (MSM group) and with a combination of 0.03% MSM and 0.5% OHMR (MSM–OHMR group). Supplementing the diet with a combination of OHMR and MSM resulted in a significant (P < 0.05) decrease in the mortality rate and serum total cholesterol concentration, and in an increase in the antioxidant enzyme activities of superoxide dismutase and catalase in duck breast muscle (Musculus pectoralis) by 3 and 6 weeks. Moreover, MSM–OHMR as well as MSM alone affected meat quality of ducks by increasing the concentrations of crude protein and sulfur content, and water-holding capacity, and by decreasing percentage moisture loss and thiobarbituric acid-reactive substances during cold storage. Significant differences were detected in concentrations of total unsaturated fatty acids, monounsaturated fatty acids and polyunsaturated fatty acids, which were significantly (P < 0.05) higher in the MSM–OHMR group. These results suggest that diets containing MSM and OHMR possessing free-radical scavenging activities, such as for 1,1-diphenyl-2-picrylhydrazyl and alkyl radicals, may beneficially affect growth performance and meat quality in ducks.
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Wickramasuriya S, Yi Y, Yoo J, Kim J, Heo K, Heo J. Lysine requirements of Korean native ducklings for three weeks after hatch. J APPL POULTRY RES 2016. [DOI: 10.3382/japr/pfw019] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Wickramasuriya SS, Yi YJ, Yoo J, Kang NK, Heo JM. A review of canola meal as an alternative feed ingredient for ducks. JOURNAL OF ANIMAL SCIENCE AND TECHNOLOGY 2015; 57:29. [PMID: 26473064 PMCID: PMC4607012 DOI: 10.1186/s40781-015-0062-4] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Accepted: 08/07/2015] [Indexed: 11/10/2022]
Abstract
This review provides an overview of the published data on the canola meal and its suitability for duck as an alternative plant-origin protein source to soybean meal. Canola meal is a legume origin protein source containing comparable amino acid profile to soybean meal and rich in essential minerals and vitamins. Nonetheless, it is known to contain less in energy content than soybean meal. Factors like field conditions and processing methods creates compositional variations among canola meal. Presence of anti-nutritional factors such as phenolic substances, phytate and glucosinolates which are known to reduce growth performance in livestock animals, are the major drawbacks for canola meal to be a competitive plant-origin protein source in the feed industry. This review is focused to address i) nutritional characteristics and feeding value of canola meal for ducks and ii) impacts of feeding canola meal on performances of ducks.
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Affiliation(s)
| | - Young-Joo Yi
- />Division of Biotechnology, College of Environmental & Bioresources, Chonbuk National University, Iksan-si, Jeollabuk-do 570-752 Republic of Korea
| | - Jaehong Yoo
- />Division of Animal and Dairy Science, Chungnam National University, Daejeon, 305-764 Republic of Korea
| | - Nam Kyu Kang
- />Division of Animal and Dairy Science, Chungnam National University, Daejeon, 305-764 Republic of Korea
| | - Jung Min Heo
- />Division of Animal and Dairy Science, Chungnam National University, Daejeon, 305-764 Republic of Korea
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Kwon HJ, Choo YK, Choi YI, Kim EJ, Kim HK, Heo KN, Choi HC, Lee SK, Kim CJ, Kim BG, Kang CW, An BK. Carcass Characteristics and Meat Quality of Korean Native Ducks and Commercial Meat-type Ducks Raised under Same Feeding and Rearing Conditions. ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES 2014; 27:1638-43. [PMID: 25358325 PMCID: PMC4213710 DOI: 10.5713/ajas.2014.14191] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Revised: 05/18/2014] [Accepted: 06/12/2014] [Indexed: 12/02/2022]
Abstract
This study was conducted to compare carcass characteristics and physico-chemical meat quality in two different genotype ducks raised under identical feeding and rearing conditions. A total of ninety 1-d-old Korean native ducks (KND, n = 45) and commercial meat-type ducks (Grimaud, n = 45) were fed same experimental diets during 56 d and 42 d, respectively to obtain similar slaughter weights. The experimental diet for starter period contained 20% crude protein (CP) and 2,900 kcal nitrogen corrected true metabolizable energy (TMEn)/kg of diet and that for grower period contained 17% CP and 3,050 TMEn/kg of diet. Average daily gain and feed efficiency of KND were inferior to those of commercial meat-type ducks (p<0.05). Carcass weight was not different between two genetically different ducks, but carcass yield of KND was significantly higher (p<0.05) than that of commercial meat-type ducks. There were no significant differences in cooking loss and pH of breast meat between two genetically different ducks, but water holding capacity of KND was significantly higher than that of commercial meat-type ducks. The linoleic acid and total polyunsaturated fatty acid of breast meat from KND were significantly higher (p<0.05) than the corresponding part from commercial meat-type ducks. Significant differences were detected in water holding capacity and the content of linoleic acid and polyunsaturated fatty acid, which were significantly higher in KND, whereas growth performance tended to be superior in commercial ducks. At the market weight, the meat from KND was judged to have better qualities with regard to higher water holding capacity and greater content of polyunsaturated fatty acid compare with meat from commercial meat-type duck.
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Affiliation(s)
| | | | | | - E. J. Kim
- Division of Animal Husbandry, Cheonan Yonam College, Cheonan 330-709,
Korea
| | - H. K. Kim
- Poultry Science Division, National Institute of Animal Science, RDA, Seonghwan 330-801,
Korea
| | - K. N. Heo
- Poultry Science Division, National Institute of Animal Science, RDA, Seonghwan 330-801,
Korea
| | - H. C. Choi
- Poultry Science Division, National Institute of Animal Science, RDA, Seonghwan 330-801,
Korea
| | - S. K. Lee
- Department of Animal Products and Food Science, Kangwon National University, Chuncheon 200-701,
Korea
| | - C. J. Kim
- Department of Food Science and Biotechnology of Animal Resources, Konkuk University, Seoul 143-701,
Korea
| | | | | | - B. K. An
- Corresponding Author: B. K. An. Tel: +82-2-450-3669, Fax: +82-2-452-9946, E-mail:
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