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Zhang YP, Li Y, Nakasone KK, He SH. Stratocorticium sinensis gen. et sp. nov. and Cericium gloeocystidiatum sp. nov. ( Cyphellaceae, Agaricales) from East Asia. J Fungi (Basel) 2024; 10:722. [PMID: 39452674 PMCID: PMC11509246 DOI: 10.3390/jof10100722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Revised: 10/15/2024] [Accepted: 10/15/2024] [Indexed: 10/26/2024] Open
Abstract
Cyphellaceae, a small and under-studied family of Agaricales, includes mostly saprophytic taxa with varied basidiomes. In this study, we focus on wood-decay species with corticioid or stereoid basidiomes. Phylogenetic analyses of concatenated ITS-nrLSU sequences uncovered seven generic lineages of corticioid or stereoid fungi-Acanthocorticium, Cericium, Chondrostereum, Cunninghammyces, Gloeostereum, Granulobasidium, and Stratocorticium gen. nov. The genus Cericium is shown to be in the Cyphellaceae family, and two new species, Cericium gloeocystidiatum and Stratocorticium sinensis, are described from East Asia. Morphologically, Ce. gloeocystidiatum is characterized by resupinate basidiomes with smooth hymenophores, a dimitic hyphal system with clamped generative hyphae and micro-binding hyphae, cystidia with resinous-like or golden yellow contents, and ellipsoid basidiospores. Stratocorticium is monotypic, differing from Cericium by a trimitic hyphal system of clamped generative, micro-binding, and brown, thick-walled skeletal-like hyphae, clavate to cylindrical cystidia with homogenous, colorless contents, and hyphidia. Descriptions and illustrations are provided for the new taxa and Cericium luteoincrustatum, and a key to corticioid or stereoid genera in Cyphellaceae is included.
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Affiliation(s)
- Yu-Peng Zhang
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China; (Y.-P.Z.)
| | - Yue Li
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China; (Y.-P.Z.)
| | - Karen K. Nakasone
- Center for Forest Mycology Research, Northern Research Station, U.S. Forest Service, Madison, WI 53726, USA;
| | - Shuang-Hui He
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China; (Y.-P.Z.)
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Kim D, Cho Y, Lim YW. Taxonomic Re-Evaluation of the Genus Fuscoporia in the Republic of Korea Including Three Unrecorded Species. MYCOBIOLOGY 2024; 52:236-249. [PMID: 39445130 PMCID: PMC11494702 DOI: 10.1080/12298093.2024.2378565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Revised: 07/02/2024] [Accepted: 07/07/2024] [Indexed: 10/25/2024]
Abstract
The genus Fuscoporia (Hymenochaetaceae, Basidiomycota) comprises poroid white-rot fungi characterized by dark brown hymenial setae, a dimitic hyphal system, and encrusted generative hyphae. Despite the ecological and commercial significance of Fuscoporia species, their identification has been challenging owing to their morphological overlap with other genera of Hymenochaetaceae and to the limited resolution of nuclear ribosomal DNA markers. With the advances in molecular research, Fuscoporia has been revised to include species from Inonotus sensu lato and Phellinus sensu lato, and 71 new species have been reported over the past decade. In Korea, a comprehensive taxonomic study elucidating the true diversity of Fuscoporia is yet to be conducted. Among the 11 Fuscoporia species reported in Korea, two were identified solely based on morphological characteristics, and four were identified based on nuclear ribosomal DNA regions, which have limited resolution for species identification in Fuscoporia. To investigate the current status of Fuscoporia species native to Korea, we conducted a phylogenetic study using four genetic markers (ITS + nrLSU + RPB2 + TEF1), along with morphological characteristics, and re-analyzed the GenBank records deposited from Korea. Ten Fuscoporia species were identified, including three previously unrecorded species. A detailed description of the unrecorded species and a list of proposed Korean names for all Fuscoporia species in Korea are provided. This study will guide further taxonomic and applied research of Fuscoporia by providing a species identification key and a verified multigenetic database, in addition to confirming the sequences in public database.
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Affiliation(s)
- Dohye Kim
- School of Biological Sciences and Institute of Biodiversity, Seoul National University, Seoul, Republic of Korea
| | - Yoonhee Cho
- School of Biological Sciences and Institute of Biodiversity, Seoul National University, Seoul, Republic of Korea
| | - Young Woon Lim
- School of Biological Sciences and Institute of Biodiversity, Seoul National University, Seoul, Republic of Korea
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Cho Y, Kim D, Lim YW. Phylogenetic Assessment of Understudied Families in Hymenochaetales (Basidiomycota, Fungi)-Reporting Uncovered Species and Reflecting the Recent Taxonomic Updates in the Republic of Korea. J Microbiol 2024; 62:429-447. [PMID: 38753127 PMCID: PMC11224081 DOI: 10.1007/s12275-024-00120-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 01/30/2024] [Accepted: 02/12/2024] [Indexed: 07/05/2024]
Abstract
Hymenochaetales Oberw. is an order classified in Basidiomycota of Fungi, and species in this order display notable diversity. They exhibit various fruiting body shapes, including clavarioid, effused-reflexed, and resupinate basidiomes. Few mycorrhizal species have been reported in Hymenochaetales, but wood-decaying species dominate the order. Hymenochaetaceae Imazeki & Toki and Schizoporaceae Jülich are the most species-rich families within Hymenochaetales, and most species in the Republic of Korea belong to these two families. As such, current taxonomic classification and nomenclature are not reflected upon species in the remaining Hymenochaetales families. For this study, a multifaceted morphological and multigenetic marker-based phylogenetic investigation was conducted to, firstly, comprehensively identify understudied Hymenochaetales specimens in Korea and, secondly, reflect the updates on the species classification. Five genetic markers were assessed for the phylogenetic analysis: nuclear small subunit ribosomal DNA (nSSU), internal transcribed spacer (ITS), nuclear large subunit ribosomal DNA (nLSU), RNA polymerase II subunit 2 gene (RPB2), and translation elongation factor 1 gene (TEF1). The results from phylogenetic analysis supported 18 species classified under eight families (excluding Hymenochaetaceae and Schizoporaceae) in Korea. Species formerly placed in Rickenellaceae and Trichaptum sensu lato have been systematically revised based on recent taxonomic reconstructions. In addition, our findings revealed one new species, Rickenella umbelliformis, and identified five formerly nationally unreported species classified under five understudied families. Our findings contribute to a better understanding of Hymenochaetales diversity and highlight the need for continued research.
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Affiliation(s)
- Yoonhee Cho
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 08826, Republic of Korea
| | - Dohye Kim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 08826, Republic of Korea
| | - Young Woon Lim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 08826, Republic of Korea.
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Ji XH, Sun B, He G, Sun QB. Scytinostromabambusinum sp. nov. (Russulales, Basidiomycota) in China evidenced by morphological characteristics and phylogenetic analyses. Biodivers Data J 2024; 12:e115975. [PMID: 38841136 PMCID: PMC11150869 DOI: 10.3897/bdj.12.e115975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Accepted: 05/06/2024] [Indexed: 06/07/2024] Open
Abstract
Background Wood-rotting fungi as an important group within the Basidiomycota are known for their ecological role in the forest ecosystem in terms of decaying living and dead trees and recycling nutrients in forest ecosystems. Many new species were revealed in the last five years. In the present study, during an ongoing study on Scytinostroma, a new species of Scytinostroma was found from China. It is described and illustrated on the basis of the morphological and phylogenetic evidence. New information Scytinostromabambusinum sp. nov. is described as a new species, based on morphological and molecular evidence. It is characterised by annual, resupinate and broadly ellipsoid basidiomata with white to cream hymenophore, a dimitic hyphal structure with generative hyphae bearing simple septa, the presence of cystidioles and amyloid basidiospores measuring 5.5-7 × 4-5.3 µm. Phylogeny, based on molecular data of ITS and nLSU sequences, shows that the new species forms an independent lineage and is different in morphology from the existing species of Scytinostroma.
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Affiliation(s)
- Xiao-Hong Ji
- College of Pharmacy and Life Sciences, Jiujiang University, Jiujiang, ChinaCollege of Pharmacy and Life Sciences, Jiujiang UniversityJiujiangChina
- Key Laboratory of Watershed Ecological Process and Information of Jiangxi Province, Jiujiang, ChinaKey Laboratory of Watershed Ecological Process and Information of Jiangxi ProvinceJiujiangChina
- Jiujiang Key Laboratory of Fungal Resources Conservation and Utilization, Jiujiang, ChinaJiujiang Key Laboratory of Fungal Resources Conservation and UtilizationJiujiangChina
| | - Bin Sun
- College of Pharmacy and Life Sciences, Jiujiang University, Jiujiang, ChinaCollege of Pharmacy and Life Sciences, Jiujiang UniversityJiujiangChina
| | - Gang He
- College of Pharmacy and Life Sciences, Jiujiang University, Jiujiang, ChinaCollege of Pharmacy and Life Sciences, Jiujiang UniversityJiujiangChina
- Key Laboratory of Watershed Ecological Process and Information of Jiangxi Province, Jiujiang, ChinaKey Laboratory of Watershed Ecological Process and Information of Jiangxi ProvinceJiujiangChina
- Jiujiang Key Laboratory of Fungal Resources Conservation and Utilization, Jiujiang, ChinaJiujiang Key Laboratory of Fungal Resources Conservation and UtilizationJiujiangChina
| | - Qi-Biao Sun
- College of Pharmacy and Life Sciences, Jiujiang University, Jiujiang, ChinaCollege of Pharmacy and Life Sciences, Jiujiang UniversityJiujiangChina
- Key Laboratory of Watershed Ecological Process and Information of Jiangxi Province, Jiujiang, ChinaKey Laboratory of Watershed Ecological Process and Information of Jiangxi ProvinceJiujiangChina
- Jiujiang Key Laboratory of Fungal Resources Conservation and Utilization, Jiujiang, ChinaJiujiang Key Laboratory of Fungal Resources Conservation and UtilizationJiujiangChina
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Cho M, Kwon SL, Kim C, Kim JJ. Notes of Five Wood-Decaying Fungi from Juwangsan National Park in Korea. MYCOBIOLOGY 2024; 52:30-41. [PMID: 38415179 PMCID: PMC10896149 DOI: 10.1080/12298093.2023.2299098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 12/20/2023] [Indexed: 02/29/2024]
Abstract
Wood-decaying fungi are essential decomposers in forest ecosystems. They decompose wood substrates by producing various lignocellulolytic enzymes, which have significant industrial and medical applications. A survey was conducted at the Juwangsan National Park from 2018 to 2019 to determine the diversity of macrofungi in Korea. Five previously unrecorded wood-decaying polyporoid and corticioid fungi were identified among the collected specimens: Eichleriella sinensis, Hymenochaete anomala, Hyphoderma subsetigerum, Lyomyces orientalis, and Pseudowrightoporia crassihypha. These species were identified based on morphological, molecular, and phylogenetic analyses of the internal transcribed spacer (ITS) and nuclear large subunit rDNA (nLSU) region. In this study, we provide detailed macro- and micro-morphological figures with phylogenetic trees to support the discovery of five new species in Korea.
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Affiliation(s)
- Minseo Cho
- Division of Environmental Science and Ecological Engineering, College of Life Sciences and Biotechnology, Korea University, Seoul, Republic of Korea
| | - Sun Lul Kwon
- Division of Environmental Science and Ecological Engineering, College of Life Sciences and Biotechnology, Korea University, Seoul, Republic of Korea
| | - Changmu Kim
- Species Diversity Research Division, National Institute of Biological Resources, Incheon, Republic of Korea
| | - Jae-Jin Kim
- Division of Environmental Science and Ecological Engineering, College of Life Sciences and Biotechnology, Korea University, Seoul, Republic of Korea
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Cho Y, Kim D, Lee Y, Jeong J, Hussain S, Lim YW. Validation of Fuscoporia (Hymenochaetales, Basidiomycota) ITS sequences and five new species based on multi-marker phylogenetic and morphological analyses. IMA Fungus 2023; 14:12. [PMID: 37381063 DOI: 10.1186/s43008-023-00117-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 05/30/2023] [Indexed: 06/30/2023] Open
Abstract
Although there is a continuous increase in available molecular data, not all sequence identities in public databases are always properly verified and managed. Here, the sequences available in GenBank for Fuscoporia (Hymenochaetales) were validated. Many morphological characters of Fuscoporia overlap among the species, emphasizing the role of molecular identification for accuracy. The identities of 658 Fuscoporia GenBank internal transcribed spacer (ITS) sequences were assessed using ITS phylogeny, revealing 109 (16.6%) misidentified and 196 (29.8%) unspecified sequences. They were validated and re-identified based on the research articles they were published in and, if unpublished, based on sequences from the type, type locality-derived sequences, or otherwise reliable sequences. To enhance the resolution of species delimitation, a phylogenetic assessment of a multi-marker dataset (ITS + nrLSU + rpb2 + tef1) was conducted. The multi-marker phylogeny resolved five of the twelve species complexes found in the ITS phylogeny and uncovered five new Fuscoporia species: F. dolichoseta, F. gilvoides, F. koreana, F. reticulata, and F. semicephala. The validated ITS sequences in this study may prevent further accumulation of misidentified sequences in public databases and contribute to a more accurate taxonomic evaluation of Fuscoporia species.
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Affiliation(s)
- Yoonhee Cho
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, Republic of Korea
| | - Dohye Kim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, Republic of Korea
| | - Yoongil Lee
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, Republic of Korea
| | - Juhwan Jeong
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, Republic of Korea
| | - Shahid Hussain
- Centre for Plant Sciences and Biodiversity, University of Swat, Swat, Khyber Pakhtunkhwa, Pakistan
| | - Young Woon Lim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, Republic of Korea.
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Zhang QY, Liu HG, Bian LS, Chen Q. Two new species of Scytinostroma (Russulales, Basidiomycota) in Southwest China. Front Cell Infect Microbiol 2023; 13:1189600. [PMID: 37284500 PMCID: PMC10240063 DOI: 10.3389/fcimb.2023.1189600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Accepted: 04/28/2023] [Indexed: 06/08/2023] Open
Abstract
Two new species of Scytinostroma viz. S. acystidiatum and S. macrospermum, are described from southwest China. Phylogeny based on ITS + nLSU dataset demonstrates that samples of the two species form two independent lineages and are different in morphology from the existing species of Scytinostroma. Scytinostroma acystidiatum is characterized by resupinate, coriaceous basidiomata with cream to pale yellow hymenophore, a dimitic hyphal structure with generative hyphae bearing simple septa, the absence of cystidia, and amyloid, broadly ellipsoid basidiospores measuring 4.7-7 × 3.5-4.7 μm. Scytinostroma macrospermum is characterized by resupinate, coriaceous basidiomata with cream to straw yellow hymenophore, a dimitic hyphal structure with generative hyphae bearing simple septa, numerous cystidia embedded or projecting from hymenium, and inamyloid, ellipsoid basidiospores measuring 9-11 × 4.5-5.5 μm. The differences between the new species and morphologically similar and phylogenetically related species are discussed.
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Affiliation(s)
- Qiu-Yue Zhang
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, China
| | - Hong-Gao Liu
- Yunnan Key Laboratory of Gastrodia and Fungi Symbiotic Biology, Zhaotong University, Zhaotong, Yunnan, China
| | - Lu-Sen Bian
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, China
- Experimental Centre of Forestry in North China, Warm Temperate Zone Forestry Jiulong Mountain National Permanent Scientific Research Base, Chinese Academy of Forestry, Beijing, China
| | - Qian Chen
- College of Architecture and Urban Planning, Chongqing Jiaotong University, Chongqing, China
- College of Architecture and Urban Planning, Tongji University, Shanghai, China
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Liu S, Sun YF, Ji X, Song CG, Xu TM, Cui BK. Molecular phylogeny and taxonomy of the remarkable genus Leptoporus (Polyporales, Basidiomycota) with description of a new species from Southwest China. Front Cell Infect Microbiol 2023; 12:1116035. [PMID: 36755851 PMCID: PMC9901564 DOI: 10.3389/fcimb.2022.1116035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 12/28/2022] [Indexed: 01/24/2023] Open
Abstract
Leptoporus is a rare and remarkable genus, mainly occurring in coniferous forests in the Northern Hemisphere. Recent phylogenetic studies showed that Leptoporus belongs to Irpicaceae in the phlebioid clade. It is worth noting that most species in the phlebioid clade can cause white-rot decay, except for the Leptoporus species, which can cause a brown-rot decay. In this study, we performed phylogenetic and taxonomic studies of Leptoporus and related genera. Molecular phylogenetic analyses were conducted based on sequences from multiple loci including the internal transcribed spacer (ITS) regions, the large subunit of nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II gene (RPB1), the second largest subunit of RNA polymerase II gene (RPB2), and the translation elongation factor 1-α gene (TEF1). Combined with morphological characteristics, a new species, Leptoporus submollis sp. nov., is discovered and illustrated from Southwest China.
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Affiliation(s)
| | | | | | | | | | - Bao-Kai Cui
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, China
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Olou B, Langer E, Ryvarden L, Krah FS, Hounwanou G, Piepenbring M, Yorou N. New records and barcode sequence data of wood-inhabiting polypores in Benin with notes on their phylogenetic placements and distribution. Fungal Syst Evol 2023; 11:11-42. [PMID: 37469936 PMCID: PMC10353294 DOI: 10.3114/fuse.2023.11.02] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 01/13/2023] [Indexed: 07/21/2023] Open
Abstract
Wood-inhabiting fungi (WIF), such as polypores, are extremely species-rich and play vital roles in the functioning of forest ecosystems as decomposers. Despite the importance of polypores, our knowledge of the diversity and distribution of these fungi is still poor in general and especially for West Africa. To advance our knowledge we here summarise results from field collections between 2017 and 2021 and present (i) a taxonomic overview, (ii) phylogenetic placements and (iii) an illustrated catalogue of wood-inhabiting polypore fungi with colour pictures. During the field sampling campaigns, we collected 647 specimens. Based on morphological characteristics and molecular barcode data, 76 polypore species belonging to six orders, 15 families and 39 genera were identified. Of the 76 species, 30 are new to the West Africa, 69 new to Benin, and two new combinations Fuscoporia beninensis and Megasporia minuta are proposed. With this summary, we provide new data for further research. Citation: Olou BA, Langer E, Ryvarden L, Krah F-S, Hounwanou GB, Piepenbring M, Yorou NS (2023). New records and barcode sequence data of wood-inhabiting polypores in Benin with notes on their phylogenetic placements and distribution. Fungal Systematics and Evolution 11: 11-42. doi: 10.3114/fuse.2023.11.02.
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Affiliation(s)
- B.A. Olou
- Research Unit Tropical Mycology and Plants-Soil Fungi Interactions (MyTIPS), Faculty of Agronomy, University of Parakou, BP 123 Parakou, Benin
| | - E. Langer
- Department of Ecology, University of Kassel, Heinrich-Plett-Str. 40, Kassel, Germany
| | - L. Ryvarden
- Institute of Biology, University of Oslo, P.O. Box 1066, Blindern, N-0316 Oslo, Norway
| | - F.-S. Krah
- Faculty of Biological Sciences, Institute for Ecology, Evolution and Diversity, Conservation Biology, Goethe University Frankfurt, Frankfurt am Main, Germany
| | - G.B. Hounwanou
- Research Unit Tropical Mycology and Plants-Soil Fungi Interactions (MyTIPS), Faculty of Agronomy, University of Parakou, BP 123 Parakou, Benin
| | - M. Piepenbring
- Department of Mycology, Goethe University Frankfurt am Main, Biologicum, Max-von-Laue-Str. 13, 60438, Frankfurt am Main, Germany
| | - N.S. Yorou
- Research Unit Tropical Mycology and Plants-Soil Fungi Interactions (MyTIPS), Faculty of Agronomy, University of Parakou, BP 123 Parakou, Benin
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Cheng T, Kolařík M, Quijada L, Stadler M. A re-assessment of Taxomyces andreanae, the alleged taxol-producing fungus, using comparative genomics. IMA Fungus 2022; 13:17. [PMID: 36163041 PMCID: PMC9511726 DOI: 10.1186/s43008-022-00103-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 09/15/2022] [Indexed: 11/10/2022] Open
Abstract
The monotypic "bulbilliferous hyphomycete" genus Taxomyces was erected in 1993 for a fungal endophyte isolated from the Yew tree Taxus brevifolia and named Taxomyces andreanae. This fungus was reported to produce the plant-derived anti-cancer drug taxol. The original description of the fungus was not conclusive as to its taxonomic position because no sporulation or other salient morphological features were reported. Consequently, the taxonomic affinities of this fungus have remained obscure. However, a full genome sequence of this strain was generated by a German research group in 2013, in an unsuccessful attempt to detect the biosynthesis genes encoding for taxol. This prompted us to search for phylogenetic marker genes and compare those with the data that recently have become available from state-of-the-art polyphasic taxonomic studies. Surprisingly, the strain turned out to belong to the phlebioid clade of wood-destroying Basidiomycota as inferred from a comparison of its partial ITS, the 28S rDNA (LSU), the RNA polymerase II largest subunit (rpb1), the RNA polymerase II second largest subunit (rpb2), and the translation elongation factor 1-α (tef1) sequences. A multi gene genealogy based on these loci revealed that the closest relative is Ceriporiopsis (syn. Mycoacia) gilvescens. Even though such wood-destroying Basidiomycota are regularly encountered among the endophytic isolates after surface-disinfection of plant organs, the vast majority of the reported endophytic fungi belong to the Ascomycota. Nevertheless, the data available now allow for synonymizing Taxomyces with Ceriporiopsis, and the necessary new combination is made.
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Affiliation(s)
- Tian Cheng
- Department Microbial Drugs, Helmholtz Centre for Infection Research (HZI), Inhoffenstraße 7, 38124, Braunschweig, Germany.,German Centre for Infection Research (DZIF), Partner Site Hannover-Braunschweig, Inhoffenstraße 7, 38124, Braunschweig, Germany.,Institute of Microbiology of the ASCR, v.v.i., Vídeňská 1083, 14220, Prague, Czech Republic
| | - Miroslav Kolařík
- Institute of Microbiology of the ASCR, v.v.i., Vídeňská 1083, 14220, Prague, Czech Republic
| | - Luis Quijada
- Department of Organismic and Evolutionary Biology, The Farlow Reference Library and Herbarium of Cryptogamic Botany, Harvard University, 22 Divinity Avenue, Cambridge, MA, 02138, USA
| | - Marc Stadler
- Department Microbial Drugs, Helmholtz Centre for Infection Research (HZI), Inhoffenstraße 7, 38124, Braunschweig, Germany. .,Institute of Microbiology, Technische Universität Braunschweig, Spielmannstraße 7, 38106, Braunschweig, Germany.
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11
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Li Y, He SH, Chen CC, Nakasone KK, Ma HX. Global Taxonomy and Phylogeny of Irpicaceae (Polyporales, Basidiomycota) With Descriptions of Seven New Species and Proposals of Two New Combinations. Front Microbiol 2022; 13:911978. [PMID: 35794917 PMCID: PMC9251475 DOI: 10.3389/fmicb.2022.911978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Accepted: 05/17/2022] [Indexed: 11/20/2022] Open
Abstract
The phylogenetic analyses of the family Irpicaceae were carried out based on a complete global sampling. The dataset that included concatenated ITS1-5.8S-ITS2 and nrLSU sequences of 67 taxa of Irpicaceae from around the world was subjected to the maximum likelihood analyses and Bayesian inference. In the phylogenetic tree, species from 14 genera were distributed in nine clades, among which five genera—Irpex, Phanerochaetella, Byssomerulius, Cytidiella, and Meruliopsis, received high support values. The genus Efibula was shown to be paraphyletic and four subclades could be recognized, while Phanerochaete allantospora, Leptoporus mollis, and several species from Ceriporia and Candelabrochaete formed a large clade with relatively strong support. Based on the molecular and morphological evidence, seven new corticioid species—Candelabrochaete guangdongensis, Efibula grandinosa, E. hainanensis, E. shenghuae, E. taiwanensis, Irpex alboflavescens, and Phanerochaetella sinensis, were revealed from the materials mostly from East Asia. The monotypic genus Flavodontia, newly described from southwestern China, is regarded as a later synonym of Irpex, and the new combination I. rosea is proposed. In addition, Phanerochaetella queletii is proposed for a taxon first described from Italy and newly recorded from China; Phanerochaete jose-ferreirae from Portugal is determined to be a later synonym. Descriptions and illustrations of the new species and the newly combined taxa are presented, and morphological comparisons for the known species of Efibula and Phanerochaetella are provided.
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Affiliation(s)
- Yue Li
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, China
| | - Shuang-Hui He
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, China
- *Correspondence: Shuang-Hui He
| | - Che-Chih Chen
- Department of Biology, National Museum of Natural Science, Taichung, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Karen K. Nakasone
- Center for Forest Mycology Research, Northern Research Station, U.S. Forest Service, Madison, WI, United States
| | - Hai-Xia Ma
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
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Liu S, Sun YF, Wang Y, Xu TM, Song CG, Chen YY, Cui BK. Taxonomy and molecular phylogeny of Trametopsis (Polyporales, Basidiomycota) with descriptions of two new species. MycoKeys 2022; 90:31-51. [PMID: 36760426 PMCID: PMC9849083 DOI: 10.3897/mycokeys.90.84717] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 05/17/2022] [Indexed: 11/12/2022] Open
Abstract
Trametopsis is a worldwide genus belonging to Irpicaceae in the phlebioid clade, which can cause a white decay of wood. Previously, only three species were ascribed to the genus. In this study, we performed a morphological and phylogenetic study of Trametopsis. Molecular phylogenetic analyses of multiple loci included the internal transcribed spacer (ITS) regions, the large subunit nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II (RPB1), the second largest subunit of RNA polymerase II (RPB2) and the translation elongation factor 1-α gene (TEF1). Phylogenetic trees were inferred from the combined datasets of ITS+nLSU sequences and ITS+nLSU+RPB1+RPB2+TEF1 sequences by using maximum parsimony, maximum likelihood and Bayesian inference analyses. Combined with molecular data, morphological characters and ecological traits, two new species of Trametopsis are discovered. Trametopsisabieticola is characterised by its pileate, solitary or imbricate basidiomata, buff to buff-yellow pileal surface when fresh, becoming pinkish buff to clay-buff when dry, cream to buff pore surface when fresh, becoming pinkish buff to greyish brown upon drying, round to angular and large pores (0.5-1 per mm), cylindrical basidiospores (5.8-7.2 × 1.9-2.6 μm), distributed in the high altitude of mountains and grows on Abies sp. Trametopsistasmanica is characterised by its resupinate basidiomata, cream to pinkish-buff pore surface when fresh, becoming honey-yellow to snuff brown upon drying, cylindrical basidiospores (5.2-6.3 × 1.8-2.2 μm), and by growing on Eucalyptus sp. Detailed descriptions and illustrations of the two novel species are provided.
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Affiliation(s)
- Shun Liu
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, ChinaBeijing Forestry UniversityBeijingChina
| | - Yi-Fei Sun
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, ChinaBeijing Forestry UniversityBeijingChina
| | - Yan Wang
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, ChinaBeijing Forestry UniversityBeijingChina
| | - Tai-Min Xu
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, ChinaBeijing Forestry UniversityBeijingChina
| | - Chang-Ge Song
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, ChinaBeijing Forestry UniversityBeijingChina
| | - Yuan-Yuan Chen
- College of Forestry, Henan Agricultural University, Zhengzhou, Henan 450002, ChinaHenan Agricultural UniversityZhengzhouChina
| | - Bao-Kai Cui
- Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, ChinaBeijing Forestry UniversityBeijingChina
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Taxonomy and Phylogeny of Meruliaceae with Descriptions of Two New Species from China. J Fungi (Basel) 2022; 8:jof8050501. [PMID: 35628756 PMCID: PMC9146420 DOI: 10.3390/jof8050501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Revised: 05/09/2022] [Accepted: 05/10/2022] [Indexed: 01/27/2023] Open
Abstract
Two new wood-inhabiting fungi Hermanssonia fimbriata sp. nov. and Phlebia austroasiana sp. nov. in the Meruliaceae family are described and illustrated from southwestern China based on molecular and morphological evidence. The characteristics of H. fimbriata include annual, resupinate basidiomata, the absence of cystidia and cystidioles, oblong ellipsoid basidiospores of 5–6 × 2.4–3 μm, and growth on rotten gymnosperm wood in the east Himalayas. Its basidiomata change drastically upon drying, from being a light-coloured, juicy, papillose-to-wrinkled hymenophore, to a dark-coloured, corky-to-gelatinous, and more or less smooth hymenophore. The characteristics of Ph. austroasiana include annual, resupinate basidiomata, a hydnoid hymenophore, 2–3 spines per mm, the presence of tubular cystidia of 20–25 × 3–3.5 µm, oblong ellipsoid basidiospores of 4.4–5.2 × 2.1–3 μm, and growth on angiosperm wood in tropical forests in the southern Yunnan Province. The phylogenetic analyses based on the combined 2-locus dataset (ITS1-5.8S-ITS2 (ITS) + nuclear large subunit RNA (nLSU)) confirm the placement of two new species, respectively, in Hermanssonia and Phlebia s. lato. Phylogenetically, the closely-related species to these two new species are discussed.
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15
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New data in Porotheleaceae and Cyphellaceae: epitypification of Prunulus scabripes Murrill, the status of Mycopan Redhead, Moncalvo & Vilgalys and a new combination in Pleurella Horak emend. Mycol Prog 2022. [DOI: 10.1007/s11557-022-01795-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
AbstractMycopan is a genus established for Hydropus scabripes by Redhead, Moncalvo & Vilgalys (in Redhead 2013). They considered the genus to be distinct based on morphology and the phylogenetic analysis by Moncalvo et al. (2002) which included a sequence of Hydropus scabripes (AF042635, DAOM 192847) unrelated to the type species of Hydropus (H. fuliginarius). Subsequent sequences of material identified as Hydropus scabripes are not conspecific with the sequence of DAOM 192847. We consider this sequence (obtained from a mycelium culture) to be misidentified. We investigated the true phylogenetic position of authentic Mycopan including genera previously included in Cyphellaceae and Porotheleaceae. Sixteen collections of M. scabripes from Europe and North America were studied on morphological and molecular basis (nrITS and nrLSU sequences). No sequences were obtained from the holotype of Mycopan scabripes, and we designate an epitype to fix the interpretation of this species and the genus Mycopan. Mycopan is maintained as a good genus nested within Cyphellaceae as sister to the mycenoid genus Atheniella. The misidentified Hydropus scabripes AF042635 (DAOM 192847) represents a different species that is closely related to the holotype (and a new Italian collection) of Hebelomina microspora and the monospecific genus Pleurella described from New Zealand. Consequently, Hebelomina microspora is transferred to the emended genus Pleurella, which is sister to Baeospora within the Cyphellaceae. Additionally, based on these phylogenetic results, an updated taxonomic arrangement of Cyphellaceae and Porotheleaceae is proposed, emphasizing once again the polyphyletic nature of Hydropus and Gerronema.
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16
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Species diversity, taxonomy and multi-gene phylogeny of phlebioid clade (Phanerochaetaceae, Irpicaceae, Meruliaceae) of Polyporales. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00490-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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17
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Lin YC, Wei CL, Chen CY, Chen CC, Wu SH. Three new species of Cylindrobasidium (Physalacriaceae, Agaricales) from East Asia. Mycol Prog 2021. [DOI: 10.1007/s11557-021-01730-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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18
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Chemical constituents from basidiomycete Basidioradulum radula culture medium and their cytotoxic effect on human prostate cancer DU-145 cells. Bioorg Chem 2021; 114:105064. [PMID: 34134032 DOI: 10.1016/j.bioorg.2021.105064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 05/12/2021] [Accepted: 06/02/2021] [Indexed: 11/21/2022]
Abstract
Eight new naphtho[1,2-c]furan derivatives (1-8) along with six known analogues (9-14) were isolated from culture medium of the basidiomycete Basidioradulum radula. The structures of these compounds were identified using spectroscopic analysis, and their absolute configurations were resolved using X-ray diffraction, ECD, and VCD. Compounds 7 and 14 inhibited the cell viability of human prostate cancer DU-145 cells with IC50 values of 7.54 ± 0.03 μM and 5.04 ± 0.03 μM, respectively. At 8 μM, compounds 7 and 14 increased the percentage of apoptotic cells and upregulated the protein expression related to the apoptosis caspase pathways in DU-145 cells. Furthermore, the hallmarks of cells undergoing apoptosis, such as chromatin condensation, were also observed at this concentration. However, compound 7 and 14 showed no effect on the proliferation of splenocytes isolated from cyclophosphamide-induce immunosuppressed mice.
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Decock CA, Wagara I, Balezi A, Yombiyeni P. Haploporus (Basidiomycota, Polyporales) in sub-Saharan Africa: Poria eichelbaumii, a long-forgotten name, is reinstated in Haploporus and H. grandisporus sp. nov. is proposed. Mycol Prog 2021. [DOI: 10.1007/s11557-020-01660-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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20
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Successional Variation in the Soil Microbial Community in Odaesan National Park, Korea. SUSTAINABILITY 2020. [DOI: 10.3390/su12114795] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Succession is defined as variation in ecological communities caused by environmental changes. Environmental succession can be caused by rapid environmental changes, but in many cases, it is slowly caused by climate change or constant low-intensity disturbances. Odaesan National Park is a well-preserved forest located in the Taebaek mountain range in South Korea. The forest in this national park is progressing from a mixed-wood forest to a broad-leaved forest. In this study, microbial community composition was investigated using 454 sequencing of soil samples collected from 13 different locations in Odaesan National Park. We assessed whether microbial communities are affected by changes in environmental factors such as water content (WC), nutrient availability (total carbon (TC) and total nitrogen (TN)) and pH caused by forest succession. WC, TC, TN and pH significantly differed between the successional stages of the forest. The WC, TC and TN of the forest soils tended to increase as succession progressed, while pH tended to decrease. In both successional stages, the bacterial genus Pseudolabrys was the most abundant, followed by Afipia and Bradyrhizobium. In addition, the fungal genus Saitozyma showed the highest abundance in the forest soils. Microbial community composition changed according to forest successional stage and soil properties (WC, TC, TN, and pH). Furthermore, network analysis of both bacterial and fungal taxa revealed strong relationships of the microbial community depending on the soil properties affected by forest succession.
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Cho SE, Kwag YN, Jo JW, Han SK, Oh SH, Kim CS. Macrofungal diversity of urbanized areas in southern part of Korea. JOURNAL OF ASIA-PACIFIC BIODIVERSITY 2020. [DOI: 10.1016/j.japb.2020.01.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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22
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Yurchenko E, Riebesehl J, Langer E. Fasciodontia gen. nov. (Hymenochaetales, Basidiomycota) and the taxonomic status of Deviodontia. Mycol Prog 2020. [DOI: 10.1007/s11557-019-01554-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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23
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Chen CC, Chen CY, Lim YW, Wu SH. Phylogeny and taxonomy of Ceriporia and other related taxa and description of three new species. Mycologia 2020; 112:64-82. [PMID: 31906813 DOI: 10.1080/00275514.2019.1664097] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Species of Ceriporia (Irpicaceae, Basidiomycota) are saprotrophs or endophytes in forest ecosystems. To evaluate the taxonomy and generic relationships of Ceriporia and other related taxa, we used morphology and multigene phylogenetic analyses based on sequence data from nuc rDNA internal transcribed spacer ITS1-5.8S-ITS2 (ITS) region, nuc 28S rDNA (28S), and RNA polymerase II largest subunit (rpb1). Our results show that Ceriporia sensu lato is polyphyletic and distributed across multiple clades in the Irpicaceae, Phanerochaetaceae, and Meruliaceae. Some species previously considered in Ceriporia are now recovered in Meruliopsis, resulting in four new combinations: M. albomellea, M. crassitunicata, M. nanlingensis, and M. pseudocystidiata. Two new species of Meruliopsis are described: M. leptocystidiata from northeast China and South Korea and M. parvispora from Taiwan. Ceriporia arbuscula is described as a new species from Taiwan. Ceriporia mellita and Meruliopsis nanlingensis are newly recorded from Japan and Taiwan, and M. taxicola is recorded from Taiwan for the first time.
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Affiliation(s)
- Che-Chih Chen
- Department of Plant Pathology, National Chung Hsing University, Taichung 40227, Taiwan
| | - Chi-Yu Chen
- Department of Plant Pathology, National Chung Hsing University, Taichung 40227, Taiwan
| | - Young Woon Lim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Republic of Korea
| | - Sheng-Hua Wu
- Department of Plant Pathology, National Chung Hsing University, Taichung 40227, Taiwan.,Department of Biology, National Museum of Natural Science, Taichung 40419, Taiwan
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24
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He MQ, Zhao RL, Hyde KD, Begerow D, Kemler M, Yurkov A, McKenzie EHC, Raspé O, Kakishima M, Sánchez-Ramírez S, Vellinga EC, Halling R, Papp V, Zmitrovich IV, Buyck B, Ertz D, Wijayawardene NN, Cui BK, Schoutteten N, Liu XZ, Li TH, Yao YJ, Zhu XY, Liu AQ, Li GJ, Zhang MZ, Ling ZL, Cao B, Antonín V, Boekhout T, da Silva BDB, De Crop E, Decock C, Dima B, Dutta AK, Fell JW, Geml J, Ghobad-Nejhad M, Giachini AJ, Gibertoni TB, Gorjón SP, Haelewaters D, He SH, Hodkinson BP, Horak E, Hoshino T, Justo A, Lim YW, Menolli N, Mešić A, Moncalvo JM, Mueller GM, Nagy LG, Nilsson RH, Noordeloos M, Nuytinck J, Orihara T, Ratchadawan C, Rajchenberg M, Silva-Filho AGS, Sulzbacher MA, Tkalčec Z, Valenzuela R, Verbeken A, Vizzini A, Wartchow F, Wei TZ, Weiß M, Zhao CL, Kirk PM. Notes, outline and divergence times of Basidiomycota. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00435-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
AbstractThe Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406–430 Mya, classes are 211–383 Mya, and orders are 99–323 Mya, which are largely consistent with previous studies. In this study, all phylogenetically supported families were dated, with the families of Agaricomycotina diverging from 27–178 Mya, Pucciniomycotina from 85–222 Mya, and Ustilaginomycotina from 79–177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.
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25
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Riebesehl J, Yurchenko E, Nakasone KK, Langer E. Phylogenetic and morphological studies in Xylodon (Hymenochaetales, Basidiomycota) with the addition of four new species. MycoKeys 2019; 47:97-137. [PMID: 30858753 PMCID: PMC6405736 DOI: 10.3897/mycokeys.47.31130] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Accepted: 01/31/2019] [Indexed: 11/12/2022] Open
Abstract
Xylodon (Hymenochaetales, Basidiomycota) is the largest segregate genus of Hyphodontia s.l. Based on molecular and morphological data, 77 species are accepted in Xylodon to date. Phylogenetic analyses of ITS and 28S sequences, including 38 new ITS and 20 28S sequences of Xylodon species, revealed four species new to science. The new taxa X.exilis, X.filicinus, X.follis and X.pseudolanatus from Taiwan, Nepal, Réunion, Belize, and USA are described and illustrated. In addition, species concepts for Odontiavesiculosa from New Zealand and Xylodonlanatus from U.S.A. are revised and the new name X.vesiculosus is proposed. Phylogenetic analyses of the ITS region placed X.spathulatus, X.bubalinus and X.chinensis in a strongly supported clade and demonstrated that they are conspecific. Palifer and Odontiopsis are synonymised under Xylodon based on morphological and sequence data. The following new combinations are proposed: X.erikssonii, X.gamundiae, X.hjortstamii, X.hyphodontinus, X.septocystidiatus and X.verecundus. Line drawings of X.cystidiatus, X.hyphodontinus, X.lanatus and X.vesiculosus, as well as photographs of X.raduloides basidiomata, are provided. A key to X.lanatus and similar species is presented.
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Affiliation(s)
- Janett Riebesehl
- Department of Ecology, University of Kassel, Heinrich-Plett-Str. 40, DE-34132, Kassel, Germany University of Kassel Kassel Germany
| | - Eugene Yurchenko
- Department of Biotechnology, Polessky State University, Dnyaprouskai flatylii str. 23, BY-225710, Pinsk, Belarus Polessky State University Pinsk Belarus
| | - Karen K Nakasone
- Center for Forest Mycology Research, Northern Research Station, U.S. Forest Service, One Gifford Pinchot Drive, Madison, WI 53726-2398, USA U.S. Forest Service Madison United States of America
| | - Ewald Langer
- Department of Ecology, University of Kassel, Heinrich-Plett-Str. 40, DE-34132, Kassel, Germany University of Kassel Kassel Germany
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26
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Viner I, Spirin V, Zíbarová L, Larsson KH. Additions to the taxonomy of Lagarobasidium and Xylodon (Hymenochaetales, Basidiomycota). MycoKeys 2018:65-90. [PMID: 30386167 PMCID: PMC6207632 DOI: 10.3897/mycokeys.41.28987] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Accepted: 09/26/2018] [Indexed: 11/12/2022] Open
Abstract
Lagarobasidium is a small genus of wood-decaying basidiomycetes in the order Hymenochaetales. Molecular phylogenetic analyses have either supported Lagarobasidium as a distinct taxon or indicated that it should be subsumed under Xylodon, a genus that covers the majority of species formerly placed in Hyphodontia. We used sequences from the ITS and nuclear LSU regions to infer the phylogenetic position of the type species L.detriticum. Analyses confirm Lagarobasidium as a synonym of Xylodon. Molecular and morphological information show that the traditional concept of L.detriticum covers at least two species, Xylodondetriticus from Europe and X.pruinosus with known distribution in Europe and North America. Three species currently placed in Lagarobasidium are transferred to Xylodon, viz. X.magnificus, X.pumilius and X.rickii. Three new Xylodon species are described and illustrated, X.ussuriensis and X.crystalliger from East Asia and X.attenuatus from the Pacific Northwest America. The identity of X.nongravis, described from Sri Lanka, is discussed.
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Affiliation(s)
- Ilya Viner
- Lomonosov State University, Faculty of Biology, Leninskie Gory 1/12, 119234 Moscow, Russia University of Helsinki Helsinki Finland.,Botany Unit (Mycology), Finnish Museum of Natural History, P.O. Box 7, FI-00014 University of Helsinki, Finland Lomonosov State University Moscow Russia
| | - Viacheslav Spirin
- Botany Unit (Mycology), Finnish Museum of Natural History, P.O. Box 7, FI-00014 University of Helsinki, Finland Lomonosov State University Moscow Russia.,Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway University of Oslo Oslo Norway
| | - Lucie Zíbarová
- Resslova 26, Ústí nad Labem, CZ-400 01, Czech Republic Unaffiliated Ústí nad Labem Czech Republic
| | - Karl-Henrik Larsson
- Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway University of Oslo Oslo Norway
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28
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Miettinen O, Vlasák J, Rivoire B, Spirin V. Postia caesia complex ( Polyporales, Basidiomycota) in temperate Northern Hemisphere. Fungal Syst Evol 2018; 1:101-129. [PMID: 32490363 PMCID: PMC7259241 DOI: 10.3114/fuse.2018.01.05] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
Taxonomy of the Postia caesia complex is revised based on morphology and two genetic markers, ITS and tef1. In total, we recognize 24 species, multiplying the known species diversity in the complex. We provide descriptions for 20 temperate Northern Hemisphere taxa. Identity of the core species, P. caesia, is re-established, and a neotype from the type locality is selected. Four new combinations are proposed, and 10 new species are described: P. arbuti, P. auricoma, P. bifaria, P. comata, P. cyanescens, P. glauca, P. livens, P. magna, P. populi, and P. yanae.
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Affiliation(s)
- O Miettinen
- Finnish Museum of Natural History, University of Helsinki, Finland
| | - J Vlasák
- Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | | | - V Spirin
- Finnish Museum of Natural History, University of Helsinki, Finland
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29
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Liu SL, Nakasone KK, Wu SH, He SH, Dai YC. Taxonomy and phylogeny of Lopharia s.s., Dendrodontia, Dentocorticium and Fuscocerrena (Basidiomycota, Polyporales). MycoKeys 2018:25-48. [PMID: 29681736 PMCID: PMC5904543 DOI: 10.3897/mycokeys.32.23641] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Accepted: 03/08/2018] [Indexed: 11/25/2022] Open
Abstract
Eleven taxa of Lopharia s.s., Dendrodontia, Dentocorticium and Fuscocerrena in Polyporales are included in the phylogenetic analyses of nuc rDNA ITS1-5.8S-ITS2 (ITS), D1-D2 domains of nuc 28S rDNA (28S) and RNA polymerase II second-largest subunit (rpb2) sequences. New species Lophariaresupinata and L.sinensis are described and illustrated. Lophariaresupinata, from south-eastern China, is closely related to L.ayresii, and L.sinensis, from northern China, is related to L.cinerascens and L.mirabilis. Lophariamirabilis specimens from temperate to tropical areas with varied hymenophore configurations all cluster together in a fully supported clade. Dendrodontia and Fuscocerrena are shown to be synonyms of Dentocorticium, which is phylogenetically related to Lopharia. Four new combinations, Dentocorticiumbicolor, D.hyphopaxillosum, D.portoricense and D.taiwanianum, are proposed. Revised generic descriptions of Lopharia and Dentocorticium are provided with keys to the six accepted species in each genus. A list of all names in Lopharia and Dentocorticium are presented with their current taxonomic status. Type specimens of Dentocorticiumbrasiliense and D.irregulare were examined and determined to be later synonyms of Punctulariasubhepatica and Diplomitoporusdaedaleiformis, respectively.
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Affiliation(s)
- Shi-Liang Liu
- Institute of Microbiology, Beijing Forestry University, Beijing 100083, China
| | - Karen K Nakasone
- Center for Forest Mycology Research, Northern Research Station, U.S. Forest Service, One Gifford Pinchot Drive, Madison, WI 53726-2398, USA
| | - Sheng-Hua Wu
- Department of Biology, National Museum of Natural Science, Taichung 40419, Taiwan
| | - Shuang-Hui He
- Institute of Microbiology, Beijing Forestry University, Beijing 100083, China
| | - Yu-Cheng Dai
- Beijing Advanced Innovation Centre for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China
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30
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Park MS, Cho HJ, Kim NK, Park JY, Lee H, Park KH, Kim MJ, Kim JJ, Kim C, Lim YW. Ten New Recorded Species of Macrofungi on Ulleung Island, Korea. MYCOBIOLOGY 2017; 45:286-296. [PMID: 29371796 PMCID: PMC5780360 DOI: 10.5941/myco.2017.45.4.286] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2017] [Revised: 09/29/2017] [Accepted: 10/11/2017] [Indexed: 05/27/2023]
Abstract
Ulleung Island is a biodiversity hotspot in South Korea. During a survey of indigenous fungal species from Ulleung Island conducted from 2015 to 2016, we discovered 10 unrecorded macrofungi in Korea. These macrofungi were identified to the species level using morphological features and phylogenetic analysis based on the internal transcribed spacer region: Deconica phyllogena, Mycena zephirus, Phaeomarasmius proximans, Phlebia radiata, Pluteus semibulbosus, Postia alni, Resinicium pinicola, Scytinostroma portentosum, Tricholomopsis flammula, and Tyromyces kmetii. We also provide detailed morphological descriptions for these 10 species.
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Affiliation(s)
- Myung Soo Park
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Korea
| | - Hae Jin Cho
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Korea
| | - Nam Kyu Kim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Korea
| | - Jae Young Park
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Korea
| | - Hyun Lee
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Korea
| | - Ki Hyeong Park
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Korea
| | - Min-Ji Kim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Korea
| | - Jae-Jin Kim
- Division of Environmental Science & Ecological Engineering, Korea University, Seoul 02841, Korea
| | - Changmu Kim
- Microorganism Resources Division, National Institute of Biological Resources, Incheon 22689, Korea
| | - Young Woon Lim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Korea
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