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Sales S, Lourenço HM, Bandarra NM, Afonso C, Matos J, Botelho MJ, Pessoa MF, Félix PM, Veronez A, Cardoso C. How Biological Activity in Sea Cucumbers Changes as a Function of Species and Tissue. Foods 2023; 13:35. [PMID: 38201062 PMCID: PMC10778530 DOI: 10.3390/foods13010035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Revised: 12/18/2023] [Accepted: 12/19/2023] [Indexed: 01/12/2024] Open
Abstract
Biological activity and bioactive compound content in sea cucumbers was assessed, considering Parastichopus regalis, Holothuria mammata, Holothuria forskali, and Holothuria arguinensis as species and intestine, muscle band, respiratory tree, body wall, and gonads as tissues. P. regalis had the lowest content in phenolic compounds and antioxidant activity in contrast to Holothuria species. In the respiratory tree, the highest phenolic concentration was recorded in H. arguinensis, 76.4 ± 1.2 mg GAE/100 g dw vs. 21.0-49.0 mg GAE/100 g dw in the other species. H. arguinensis had the highest DPPH and FRAP results in the gonads, 13.6 ± 0.7 mg AAE/100 g dw vs. 2.6-3.5 mg AAE/100 g dw and 27.1 ± 0.3 μmol Fe2+/g dw vs. 8.0-15.9 μmol Fe2+/g dw, respectively. Overall, P. regalis biomass presented the highest anti-inflammatory activity levels and H. arguinensis the lowest anti-inflammatory levels. The respiratory tree was the most anti-inflammatory (measured by the inhibition of cyclooxygenase-2, COX-2) tissue in H. mammata and H. forskali (also the muscle band in this case), 76.3 ± 6.3% and 59.5 ± 3.6% COX-2 inhibition in 1 mg/mL aqueous extracts, respectively. The results demonstrated a variable bioactive potential and advantage in targeting antioxidant properties in the muscle band and anti-inflammatory activity in the respiratory tree, which may constitute a starting point for a biorefinery approach envisaging multiple applications.
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Affiliation(s)
- Sabrina Sales
- Division of Aquaculture and Upgrading (DivAV), Portuguese Institute for the Sea and Atmosphere (IPMA, IP), Rua Alfredo Magalhães Ramalho 6, 1495-006 Lisbon, Portugal; (S.S.); (H.M.L.); (N.M.B.); (C.A.); (J.M.)
- Division of Oceanography and Marine Environment (DivOA), Portuguese Institute for the Sea and Atmosphere (IPMA, IP), 1495-165 Lisbon, Portugal;
- GeoBioTec, Department of Earth Sciences, Faculty of Science and Technology (UNL), Largo da Torre, 2829-516 Caparica, Portugal;
| | - Helena M. Lourenço
- Division of Aquaculture and Upgrading (DivAV), Portuguese Institute for the Sea and Atmosphere (IPMA, IP), Rua Alfredo Magalhães Ramalho 6, 1495-006 Lisbon, Portugal; (S.S.); (H.M.L.); (N.M.B.); (C.A.); (J.M.)
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), University of Porto, Rua dos Bragas 289, 4050-123 Porto, Portugal
| | - Narcisa M. Bandarra
- Division of Aquaculture and Upgrading (DivAV), Portuguese Institute for the Sea and Atmosphere (IPMA, IP), Rua Alfredo Magalhães Ramalho 6, 1495-006 Lisbon, Portugal; (S.S.); (H.M.L.); (N.M.B.); (C.A.); (J.M.)
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), University of Porto, Rua dos Bragas 289, 4050-123 Porto, Portugal
| | - Cláudia Afonso
- Division of Aquaculture and Upgrading (DivAV), Portuguese Institute for the Sea and Atmosphere (IPMA, IP), Rua Alfredo Magalhães Ramalho 6, 1495-006 Lisbon, Portugal; (S.S.); (H.M.L.); (N.M.B.); (C.A.); (J.M.)
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), University of Porto, Rua dos Bragas 289, 4050-123 Porto, Portugal
| | - Joana Matos
- Division of Aquaculture and Upgrading (DivAV), Portuguese Institute for the Sea and Atmosphere (IPMA, IP), Rua Alfredo Magalhães Ramalho 6, 1495-006 Lisbon, Portugal; (S.S.); (H.M.L.); (N.M.B.); (C.A.); (J.M.)
| | - Maria João Botelho
- Division of Oceanography and Marine Environment (DivOA), Portuguese Institute for the Sea and Atmosphere (IPMA, IP), 1495-165 Lisbon, Portugal;
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), University of Porto, Rua dos Bragas 289, 4050-123 Porto, Portugal
| | - Maria Fernanda Pessoa
- GeoBioTec, Department of Earth Sciences, Faculty of Science and Technology (UNL), Largo da Torre, 2829-516 Caparica, Portugal;
| | - Pedro M. Félix
- MARE—Marine and Environmental Sciences Centre/ARNET—Aquatic Research Network, Faculty of Sciences, University of Lisbon, 1749-017 Lisbon, Portugal;
| | - Arthur Veronez
- Centre for Functional Ecology—Science for People & the Planet, Department of Life Sciences, Faculty of Science and Technology, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal;
| | - Carlos Cardoso
- Division of Aquaculture and Upgrading (DivAV), Portuguese Institute for the Sea and Atmosphere (IPMA, IP), Rua Alfredo Magalhães Ramalho 6, 1495-006 Lisbon, Portugal; (S.S.); (H.M.L.); (N.M.B.); (C.A.); (J.M.)
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), University of Porto, Rua dos Bragas 289, 4050-123 Porto, Portugal
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Yu J, Jiang C, Yamano R, Koike S, Sakai Y, Mino S, Sawabe T. Unveiling the early life core microbiome of the sea cucumber Apostichopus japonicus and the unexpected abundance of the growth-promoting Sulfitobacter. Anim Microbiome 2023; 5:54. [PMID: 37876012 PMCID: PMC10599069 DOI: 10.1186/s42523-023-00276-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 10/16/2023] [Indexed: 10/26/2023] Open
Abstract
BACKGROUND Microbiome in early life has long-term effects on the host's immunological and physiological development and its disturbance is known to trigger various diseases in host Deuterostome animals. The sea cucumber Apostichopus japonicus is one of the most valuable marine Deuterostome invertebrates in Asia and a model animal in regeneration studies. To understand factors that impact on host development and holobiont maintenance, host-microbiome association has been actively studied in the last decade. However, we currently lack knowledge of early life core microbiome during its ontogenesis and how it benefits the host's growth. RESULTS We analyzed the microbial community in 28 sea cucumber samples from a laboratory breeding system, designed to replicate aquaculture environments, across six developmental stages (fertilized eggs to the juvenile stage) over a three years-period to examine the microbiomes' dynamics and stability. Microbiome shifts occurred during sea cucumber larval ontogenesis in every case. Application of the most sophisticated core microbiome extraction methodology, a hybrid approach with abundance-occupancy core microbiome analyses (top 75% of total reads and > 70% occupation) and core index calculation, first revealed early life core microbiome consisted of Alteromonadaceae and Rhodobacteraceae, as well as a stage core microbiome consisting of pioneer core microbe Pseudoalteromonadaceae in A. japonicus, suggesting a stepwise establishment of microbiome related to ontogenesis and feeding behavior in A. japonicus. More interestingly, four ASVs affiliated to Alteromonadaceae and Rhodobacteraceae were extracted as early life core microbiome. One of the ASV (ASV0007) was affiliated to the Sulfitobactor strain BL28 (Rhodobacteraceae), isolated from blastula larvae in the 2019 raring batch. Unexpectedly, a bioassay revealed the BL28 strain retains a host growth-promoting ability. Further meta-pangenomics approach revealed the BL28 genome reads were abundant in the metagenomic sequence pool, in particular, in that of post-gut development in early life stages of A. japonicus. CONCLUSION Repeated rearing efforts of A. japonicus using laboratory aquaculture replicating aquaculture environments and hybrid core microbiome extraction approach first revealed particular ASVs affiliated to Alteromonadaceae and Rhodobacteraceae as the A. japonicus early life core microbiome. Further bioassay revealed the growth promoting ability to the host sea cucumber in one of the core microbes, the Sulfitobactor strain BL28 identified as ASV0007. Genome reads of the BL28 were abundant in post-gut development of A. japonicus, which makes us consider effective probiotic uses of those core microbiome for sea cucumber resource production and conservation. The study also emphasizes the importance of the core microbiome in influencing early life stages in marine invertebrates. Understanding these dynamics could offer pathways to improve growth, immunity, and disease resistance in marine invertebrates.
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Affiliation(s)
- Juanwen Yu
- Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
| | - Chunqi Jiang
- Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan
- Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, Japan
| | - Ryota Yamano
- Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan
| | - Shotaro Koike
- Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan
| | - Yuichi Sakai
- Hakodate Fisheries Research, Hokkaido Research Organization, Local Independent Administrative Agency, Hakodate, Japan
| | - Sayaka Mino
- Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan
| | - Tomoo Sawabe
- Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
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Quintanilla-Mena MA, Olvera-Novoa MA, Sánchez-Tapia IA, Lara-Pérez LA, Rivas-Reyes I, Gullian-Klanian M, Patiño-Suárez MV, Puch-Hau CA. The digestive tract sections of the sea cucumber Isostichopus badionotus reveal differences in composition, diversity, and functionality of the gut microbiota. Arch Microbiol 2022; 204:463. [PMID: 35792945 DOI: 10.1007/s00203-022-03080-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 06/11/2022] [Accepted: 06/15/2022] [Indexed: 11/30/2022]
Abstract
For the first time, this study analyses the composition and diversity of the gut microbiota of Isostichopus badionotus in captivity, using high-throughput 16S rRNA sequencing, and predicts the metagenomic functions of the microbiota. The results revealed a different composition of the gut microbiota for the foregut (FG) and midgut (MG) compared to the hindgut (HG), with a predominance of Proteobacteria, followed by Actinobacteria, Bacteroidetes, and Firmicutes. The FG and MG demonstrated a greater bacterial diversity compared to the HG. In addition, a complex network of interactions was observed at the genus level and identified some strains with probiotic and bioremediation potentials, such as Acinetobacter, Ruegeria, Streptococcus, Lactobacillus, Pseudomonas, Enterobacter, Aeromonas, Rhodopseudomonas, Agarivorans, Bacillus, Enterococcus, Micrococcus, Bifidobacterium, and Shewanella. Predicting metabolic pathways revealed that the bacterial composition in each section of the intestine participates in different physiological processes such as metabolism, genetic and environmental information processing, organismal systems, and cellular processes. Understanding and manipulating microbe--host-environment interactions and their associated functional capacity could substantially contribute to achieving more sustainable aquaculture systems for I. badionotus.
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Affiliation(s)
- Mercedes A Quintanilla-Mena
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Departamento de Recursos de Mar, Unidad Mérida, Km. 6 Antigua Carretera a Progreso, Apdo. Postal 73-CORDEMEX, 97310, Mérida, Yucatán, Mexico
| | - Miguel A Olvera-Novoa
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Departamento de Recursos de Mar, Unidad Mérida, Km. 6 Antigua Carretera a Progreso, Apdo. Postal 73-CORDEMEX, 97310, Mérida, Yucatán, Mexico
| | - Itzel A Sánchez-Tapia
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Departamento de Recursos de Mar, Unidad Mérida, Km. 6 Antigua Carretera a Progreso, Apdo. Postal 73-CORDEMEX, 97310, Mérida, Yucatán, Mexico
| | - Luis A Lara-Pérez
- Tecnológico Nacional de México Campus Instituto Tecnológico de la Zona Maya, Carretera Chetumal-Escárcega km 21.5, C.P. 77965, Ejido Juan Sarabia, Quintana Roo, Mexico
| | - Isajav Rivas-Reyes
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Departamento de Recursos de Mar, Unidad Mérida, Km. 6 Antigua Carretera a Progreso, Apdo. Postal 73-CORDEMEX, 97310, Mérida, Yucatán, Mexico
| | - Mariel Gullian-Klanian
- Universidad Marista de Mérida, Periférico Norte Tablaje Catastral 13941, Carretera Mérida-Progreso, P.O. Box 97300, Mérida, Yucatán, Mexico
| | - María V Patiño-Suárez
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Departamento de Recursos de Mar, Unidad Mérida, Km. 6 Antigua Carretera a Progreso, Apdo. Postal 73-CORDEMEX, 97310, Mérida, Yucatán, Mexico
| | - Carlos A Puch-Hau
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Departamento de Recursos de Mar, Unidad Mérida, Km. 6 Antigua Carretera a Progreso, Apdo. Postal 73-CORDEMEX, 97310, Mérida, Yucatán, Mexico.
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Yu Z, Xue Z, Liu C, Zhang A, Fu Q, Yang K, Zhang F, Ran L. Distinct microbiota assembly mechanisms revealed in different reconstruction stages during gut regeneration in the sea cucumber Apostichopus japonicus. Microbiologyopen 2021; 10:e1250. [PMID: 34964292 PMCID: PMC8608568 DOI: 10.1002/mbo3.1250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 10/27/2021] [Accepted: 10/28/2021] [Indexed: 11/12/2022] Open
Abstract
Apostichopus japonicus is a useful model for studying organ regeneration, and the gut microbiota is important for host organ regeneration. However, the reconstruction process and the mechanisms of gut microbiota assembly during gut regeneration in sea cucumbers have not been well studied. In the present study, gut regeneration was induced (via evisceration) in A. japonicus, and gut immune responses and bacterial diversity were investigated to reveal gut microbiota assembly and its possible mechanisms during gut regeneration. The results revealed that bacterial community reconstruction involved two stages with distinct assembly mechanisms, where the reconstructed community was initiated from the bacterial consortium in the residual digestive tract and tended to form a novel microbiota in the later stage of reconstruction. Together, the results of immunoenzyme assays, community phylogenetic analysis, and source tracking suggested that the host deterministic process was stronger in the initial stage than in the later stage. The bacterial interactions that occurred were significantly different between the two stages. Positive interactions dominated in the initial stage, while more complex and competitive interactions developed in the later stage. Such a dynamic bacterial community could provide the host with energetic and immune benefits that promote gut regeneration and functional recovery. The results of the present study provide insights into the processes and mechanisms of gut microbiota assembly during intestinal regeneration that are valuable for understanding gut regeneration mechanisms mediated by the microbiota.
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Affiliation(s)
- Zichao Yu
- School of Laboratory Animal & Shandong Laboratory Animal CenterShandong First Medical University & Shandong Academy of Medical SciencesJinanChina
| | - Zhuang Xue
- Liaoning Key Laboratory of Marine Animal ImmunologyDalian Ocean UniversityDalianChina
| | - Chao Liu
- Liaoning Key Laboratory of Marine Animal ImmunologyDalian Ocean UniversityDalianChina
| | - Anguo Zhang
- National Marine Environmental Monitoring Center, Ministry of Ecology and EnvironmentDalianChina
| | - Qiang Fu
- Liaoning Key Laboratory of Marine Animal ImmunologyDalian Ocean UniversityDalianChina
| | - Kun Yang
- School of Laboratory Animal & Shandong Laboratory Animal CenterShandong First Medical University & Shandong Academy of Medical SciencesJinanChina
| | - Fang Zhang
- School of Laboratory Animal & Shandong Laboratory Animal CenterShandong First Medical University & Shandong Academy of Medical SciencesJinanChina
| | - Liyuan Ran
- School of Laboratory Animal & Shandong Laboratory Animal CenterShandong First Medical University & Shandong Academy of Medical SciencesJinanChina
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