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Rosonovski S, Levchenko M, Bhatnagar R, Chandrasekaran U, Faulk L, Hassan I, Jeffryes M, Mubashar SI, Nassar M, Jayaprabha Palanisamy M, Parkin M, Poluru J, Rogers F, Saha S, Selim M, Shafique Z, Ide-Smith M, Stephenson D, Tirunagari S, Venkatesan A, Xing L, Harrison M. Europe PMC in 2023. Nucleic Acids Res 2024; 52:D1668-D1676. [PMID: 37994696 PMCID: PMC10767826 DOI: 10.1093/nar/gkad1085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 10/23/2023] [Accepted: 10/30/2023] [Indexed: 11/24/2023] Open
Abstract
Europe PMC (https://europepmc.org/) is an open access database of life science journal articles and preprints, which contains over 42 million abstracts and over 9 million full text articles accessible via the website, APIs and bulk download. This publication outlines new developments to the Europe PMC platform since the last database update in 2020 (1) and focuses on five main areas. (i) Improving discoverability, reproducibility and trust in preprints by indexing new preprint content, enriching preprint metadata and identifying withdrawn and removed preprints. (ii) Enhancing support for text and data mining by expanding the types of annotations provided and developing the Europe PMC Annotations Corpus, which can be used to train machine learning models to increase their accuracy and precision. (iii) Developing the Article Status Monitor tool and email alerts, to notify users about new articles and updates to existing records. (iv) Positioning Europe PMC as an open scholarly infrastructure through increasing the portion of open source core software, improving sustainability and accessibility of the service.
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Affiliation(s)
- Summer Rosonovski
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Maria Levchenko
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Rajat Bhatnagar
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | | | - Lynne Faulk
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Islam Hassan
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Matt Jeffryes
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | | | - Maaly Nassar
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | | | - Michael Parkin
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | | | - Frances Rogers
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Shyamasree Saha
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Mohamed Selim
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Zunaira Shafique
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Michele Ide-Smith
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - David Stephenson
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Santosh Tirunagari
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Aravind Venkatesan
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Lijun Xing
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
| | - Melissa Harrison
- Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
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