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Bodus B, O'Malley K, Dieter G, Gunawardana C, McDonald W. Review of emerging contaminants in green stormwater infrastructure: Antibiotic resistance genes, microplastics, tire wear particles, PFAS, and temperature. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167195. [PMID: 37777137 DOI: 10.1016/j.scitotenv.2023.167195] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 09/08/2023] [Accepted: 09/16/2023] [Indexed: 10/02/2023]
Abstract
Green stormwater infrastructure is a growing management approach to capturing, infiltrating, and treating runoff at the source. However, there are several emerging contaminants for which green stormwater infrastructure has not been explicitly designed to mitigate and for which removal mechanisms are not yet well defined. This is an issue, as there is a growing understanding of the impact of emerging contaminants on human and environmental health. This paper presents a review of five emerging contaminants - antibiotic resistance genes, microplastics, tire wear particles, PFAS, and temperature - and seeks to improve our understanding of how green stormwater infrastructure is impacted by and can be designed to mitigate these emerging contaminants. To do so, we present a review of the source and transport of these contaminants to green stormwater infrastructure, specific treatment mechanisms within green infrastructure, and design considerations of green stormwater infrastructure that could lead to their removal. In addition, common removal mechanisms across these contaminants and limitations of green infrastructure for contaminant mitigation are discussed. Finally, we present future research directions that can help to advance the use of green infrastructure as a first line of defense for downstream water bodies against emerging contaminants of concern.
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Affiliation(s)
- Benjamin Bodus
- Department of Civil, Construction and Environmental Engineering, Marquette University, 1637 W. Wisconsin Ave, Milwaukee, WI 53233, USA.
| | - Kassidy O'Malley
- Department of Civil, Construction and Environmental Engineering, Marquette University, 1637 W. Wisconsin Ave, Milwaukee, WI 53233, USA.
| | - Greg Dieter
- Department of Civil, Construction and Environmental Engineering, Marquette University, 1637 W. Wisconsin Ave, Milwaukee, WI 53233, USA.
| | - Charitha Gunawardana
- Department of Civil, Construction and Environmental Engineering, Marquette University, 1637 W. Wisconsin Ave, Milwaukee, WI 53233, USA.
| | - Walter McDonald
- Department of Civil, Construction and Environmental Engineering, Marquette University, 1637 W. Wisconsin Ave, Milwaukee, WI 53233, USA.
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2
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Jackson AC, Jorna J, Chaston JM, Adams BJ. Glacial Legacies: Microbial Communities of Antarctic Refugia. BIOLOGY 2022; 11:biology11101440. [PMID: 36290344 PMCID: PMC9598129 DOI: 10.3390/biology11101440] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/26/2022] [Accepted: 09/30/2022] [Indexed: 11/06/2022]
Abstract
In the cold deserts of the McMurdo Dry Valleys (MDV) the suitability of soil for microbial life is determined by both contemporary processes and legacy effects. Climatic changes and accompanying glacial activity have caused local extinctions and lasting geochemical changes to parts of these soil ecosystems over several million years, while areas of refugia may have escaped these disturbances and existed under relatively stable conditions. This study describes the impact of historical glacial and lacustrine disturbance events on microbial communities across the MDV to investigate how this divergent disturbance history influenced the structuring of microbial communities across this otherwise very stable ecosystem. Soil bacterial communities from 17 sites representing either putative refugia or sites disturbed during the Last Glacial Maximum (LGM) (22-17 kya) were characterized using 16 S metabarcoding. Regardless of geographic distance, several putative refugia sites at elevations above 600 m displayed highly similar microbial communities. At a regional scale, community composition was found to be influenced by elevation and geographic proximity more so than soil geochemical properties. These results suggest that despite the extreme conditions, diverse microbial communities exist in these putative refugia that have presumably remained undisturbed at least through the LGM. We suggest that similarities in microbial communities can be interpreted as evidence for historical climate legacies on an ecosystem-wide scale.
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Affiliation(s)
- Abigail C. Jackson
- Department of Biology, Brigham Young University, Provo, UT 84602, USA
- Correspondence: (A.C.J.); (J.J.)
| | - Jesse Jorna
- Department of Biology, Brigham Young University, Provo, UT 84602, USA
- Correspondence: (A.C.J.); (J.J.)
| | - John M. Chaston
- Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT 84602, USA
| | - Byron J. Adams
- Department of Biology, Brigham Young University, Provo, UT 84602, USA
- Monte L. Bean Museum, Brigham Young University, Provo, UT 84602, USA
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3
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Liu J, Wang C, Guo Z, Liu Y, Pan K, Xu A, Zhang F, Pan X. Linking soil bacterial diversity to satellite-derived vegetation productivity: a case study in arid and semi-arid desert areas. Environ Microbiol 2021; 23:6137-6147. [PMID: 34296506 DOI: 10.1111/1462-2920.15683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 07/16/2021] [Accepted: 07/19/2021] [Indexed: 11/28/2022]
Abstract
Increasing studies have begun to focus on biodiversity-productivity relationships for soil microorganisms through molecular ecology methods. However, most of these studies involve controlled experiments, and whether the relationship remains at large spatial scales is still largely unknown. To unravel this issue, archived desert soils from long-term experiments were analysed using high-throughput sequencing, and satellite-derived vegetation datasets were acquired to quantify productivity. Most of the abundant genera were significantly different between low- and high-productivity conditions, and soil bacterial communities were strongly impacted by productivity. Soil bacterial biodiversity, including observed operational taxonomic units and the Chao1, Shannon, and Faith's PD indexes, increased rapidly with productivity at low levels and then reached a relatively stable state, and similar phenomena were observed at multiple taxonomic ranks and for most of the dominant groups. Furthermore, we discovered that the mechanisms resulting in the observed relationship might be ecosystem resource availability in large-scale regions and species competition in local regions. Collectively, these results enhance our understanding of the linkage between belowground microorganisms and aboveground vegetation in arid and semi-arid areas and confirm the potential value of satellite-derived datasets in research on soil microbial diversity at large spatial scales.
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Affiliation(s)
- Jie Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Changkun Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Zhiying Guo
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ya Liu
- Jinling Institute of Technology, Nanjing, 211169, China
| | - Kai Pan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.,University of Chinese Academy of Sciences, Beijing, 100049, China.,National Earth System Science Data Center, Nanjing, 210008, China
| | - Aiai Xu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Fangfang Zhang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xianzhang Pan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
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Hu W, Schmidt SK, Sommers P, Darcy JL, Porazinska DL. Multiple‐trophic patterns of primary succession following retreat of a high‐elevation glacier. Ecosphere 2021. [DOI: 10.1002/ecs2.3400] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Affiliation(s)
- Weiming Hu
- Department of Entomology and Nematology University of Florida Gainesville Florida32611USA
| | - Steven K. Schmidt
- Department of Ecology and Evolutionary Biology University of Colorado, Boulder Boulder Colorado80309USA
| | - Pacifica Sommers
- Department of Ecology and Evolutionary Biology University of Colorado, Boulder Boulder Colorado80309USA
| | - John L. Darcy
- Anschutz Medical Campus University of Colorado, Denver Denver Colorado80204USA
| | - Dorota L. Porazinska
- Department of Entomology and Nematology University of Florida Gainesville Florida32611USA
- Department of Ecology and Evolutionary Biology University of Colorado, Boulder Boulder Colorado80309USA
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Coyne KJ, Parker AE, Lee CK, Sohm JA, Kalmbach A, Gunderson T, León-Zayas R, Capone DG, Carpenter EJ, Cary SC. The distribution and relative ecological roles of autotrophic and heterotrophic diazotrophs in the McMurdo Dry Valleys, Antarctica. FEMS Microbiol Ecol 2020; 96:5714082. [PMID: 31967635 PMCID: PMC7043275 DOI: 10.1093/femsec/fiaa010] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2019] [Accepted: 01/21/2020] [Indexed: 12/13/2022] Open
Abstract
The McMurdo Dry Valleys (MDV) in Antarctica harbor a diverse assemblage of mat-forming diazotrophic cyanobacteria that play a key role in nitrogen cycling. Prior research showed that heterotrophic diazotrophs also make a substantial contribution to nitrogen fixation in MDV. The goals of this study were to survey autotrophic and heterotrophic diazotrophs across the MDV to investigate factors that regulate the distribution and relative ecological roles of each group. Results indicated that diazotrophs were present only in samples with mats, suggesting a metabolic coupling between autotrophic and heterotrophic diazotrophs. Analysis of 16S rRNA and nifH gene sequences also showed that diazotrophs were significantly correlated to the broader bacterial community, while co-occurrence network analysis revealed potential interspecific interactions. Consistent with previous studies, heterotrophic diazotrophs in MDV were diverse, but largely limited to lakes and their outlet streams, or other environments protected from desiccation. Despite the limited distribution, heterotrophic diazotrophs may make a substantial contribution to the nitrogen budget of MDV due to larger surface area and longer residence times of lakes. This work contributes to our understanding of key drivers of bacterial community structure in polar deserts and informs future efforts to investigate the contribution of nitrogen fixation to MDV ecosystems.
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Affiliation(s)
- Kathryn J Coyne
- College of Earth, Ocean, and Environment, University of Delaware, Lewes, DE 19958, USA
| | - Alexander E Parker
- Estuary and Ocean Science Center, San Francisco State University, Tiburon, CA 94920, USA
| | - Charles K Lee
- International Centre for Terrestrial Antarctic Research, School of Science, University of Waikato, Hamilton 3240, New Zealand
| | - Jill A Sohm
- Wrigley Institute for Environmental Studies and Department of Biological Sciences, University of Southern California, Los Angeles, CA 9008-037, USA
| | - Andrew Kalmbach
- Estuary and Ocean Science Center, San Francisco State University, Tiburon, CA 94920, USA
| | - Troy Gunderson
- Department of Biological Sciences, University of Southern California, Los Angeles, CA 9008-037, USA
| | - Rosa León-Zayas
- Willamette University, Biology Department, Salem, OR 97301, USA
| | - Douglas G Capone
- Department of Biological Sciences, University of Southern California, Los Angeles, CA 9008-037, USA
| | - Edward J Carpenter
- Estuary and Ocean Science Center, San Francisco State University, Tiburon, CA 94920, USA
| | - S Craig Cary
- College of Earth, Ocean, and Environment, University of Delaware, Lewes, DE 19958, USA.,International Centre for Terrestrial Antarctic Research, School of Science, University of Waikato, Hamilton 3240, New Zealand
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6
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Estimating microbial mat biomass in the McMurdo Dry Valleys, Antarctica using satellite imagery and ground surveys. Polar Biol 2020. [DOI: 10.1007/s00300-020-02742-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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7
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Geyer KM, Barrett JE. Unimodal productivity–diversity relationships among bacterial communities in a simple polar soil ecosystem. Environ Microbiol 2019; 21:2523-2532. [DOI: 10.1111/1462-2920.14639] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Revised: 04/20/2019] [Accepted: 04/23/2019] [Indexed: 11/27/2022]
Affiliation(s)
- Kevin M. Geyer
- Department of Natural Resources and the EnvironmentUniversity of New Hampshire Durham New Hampshire USA
- Department of Biological SciencesVirginia Polytechnic Institute and State University Blacksburg Virginia USA
| | - John E. Barrett
- Department of Biological SciencesVirginia Polytechnic Institute and State University Blacksburg Virginia USA
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Cotta SR, Cadete LL, van Elsas JD, Andreote FD, Dias ACF. Exploring bacterial functionality in mangrove sediments and its capability to overcome anthropogenic activity. MARINE POLLUTION BULLETIN 2019; 141:586-594. [PMID: 30955771 DOI: 10.1016/j.marpolbul.2019.03.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2018] [Revised: 02/28/2019] [Accepted: 03/01/2019] [Indexed: 06/09/2023]
Abstract
Mangrove forests are highly productive yet vulnerable ecosystems that act as important carbon sinks ("blue carbon"). The objective of this work was to analyze the impact of anthropogenic activities on microbiome structure and functioning. The metagenomic analysis revealed that the taxonomic compositions were grossly similar across all mangrove microbiomes. Remarkably, these microbiomes, along the gradient of anthropogenic impact, showed fluctuations in the relative abundances of bacterial taxa predicted to be involved in sulfur cycling processes. Functions involved in sulfur metabolism, such as APS pathways (associated with sulfate reduction and sulfur oxidation processes) were prevalent across the microbiomes, being sox and dsrAB genes highly expressed on anthropogenically-impacted areas. Apparently, the oil-impacted microbiomes were more affected in taxonomic than in functional terms, as high functional redundancies were noted across them. The microbial gene diversity found was typical for a functional system, even following the previous disturbance.
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Affiliation(s)
- Simone Raposo Cotta
- Department of Soil Science, ESALQ/USP, University of São Paulo, Piracicaba, Brazil
| | - Luana Lira Cadete
- Department of Soil Science, ESALQ/USP, University of São Paulo, Piracicaba, Brazil
| | - Jan Dirk van Elsas
- Microbial Ecology Group, Institute for Evolutionary Life Sciences, University of Groningen, AG, Groningen, the Netherlands
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Andriuzzi WS, Adams BJ, Barrett JE, Virginia RA, Wall DH. Observed trends of soil fauna in the Antarctic Dry Valleys: early signs of shifts predicted under climate change. Ecology 2018; 99:312-321. [PMID: 29315515 DOI: 10.1002/ecy.2090] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/14/2017] [Revised: 11/06/2017] [Accepted: 11/08/2017] [Indexed: 11/09/2022]
Abstract
Long-term observations of ecological communities are necessary for generating and testing predictions of ecosystem responses to climate change. We investigated temporal trends and spatial patterns of soil fauna along similar environmental gradients in three sites of the McMurdo Dry Valleys, Antarctica, spanning two distinct climatic phases: a decadal cooling trend from the early 1990s through the austral summer of February 2001, followed by a shift to the current trend of warming summers and more frequent discrete warming events. After February 2001, we observed a decline in the dominant species (the nematode Scottnema lindsayae) and increased abundance and expanded distribution of less common taxa (rotifers, tardigrades, and other nematode species). Such diverging responses have resulted in slightly greater evenness and spatial homogeneity of taxa. However, total abundance of soil fauna appears to be declining, as positive trends of the less common species so far have not compensated for the declining numbers of the dominant species. Interannual variation in the proportion of juveniles in the dominant species was consistent across sites, whereas trends in abundance varied more. Structural equation modeling supports the hypothesis that the observed biological trends arose from dissimilar responses by dominant and less common species to pulses of water availability resulting from enhanced ice melt. No direct effects of mean summer temperature were found, but there is evidence of indirect effects via its weak but significant positive relationship with soil moisture. Our findings show that combining an understanding of species responses to environmental change with long-term observations in the field can provide a context for validating and refining predictions of ecological trends in the abundance and diversity of soil fauna.
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Affiliation(s)
- W S Andriuzzi
- Department of Biology, Colorado State University, Fort Collins, Colorado, 80523, USA
| | - B J Adams
- Department of Biology, Evolutionary Ecology Laboratories, and Monte L. Bean Museum, Brigham Young University, Provo, Utah, 84602, USA
| | - J E Barrett
- Department of Biological Sciences, Virginia Tech, Blacksburg, Virginia, 24061, USA
| | - R A Virginia
- Environmental Studies Program, Dartmouth College, Hanover, New Hampshire, 03755, USA
| | - D H Wall
- Department of Biology, Colorado State University, Fort Collins, Colorado, 80523, USA.,School of Global Environmental Sustainability, Colorado State University, Fort Collins, Colorado, 80523, USA
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