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Iwai N, Tachiki Y. Species-specific model to predict amphibian metamorphosis. Sci Rep 2023; 13:16503. [PMID: 37783741 PMCID: PMC10545764 DOI: 10.1038/s41598-023-43639-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 09/26/2023] [Indexed: 10/04/2023] Open
Abstract
Exploring the timing of life-history transitions has been a pivotal focus in the field of evolutionary ecology. Studies on amphibian metamorphosis are well suited to investigate this aspect. We propose a species-specific model to predict the optimal metamorphosis point for frog individuals with different larval growth trajectories. Because overall fitness will be determined throughout both aquatic and terrestrial stages, we included growth and survival rates of aquatic and terrestrial stages in the fitness equation. Then we conducted a rearing experiment on a brown frog, Rana ornativentris, as an example to obtain the size at metamorphosis, larval period, and larval growth trajectory. Based on these results, we determined the model's parameters to fit the actual metamorphosis patterns. Because the parameters are supposed to be evolutionarily maintained, our data-driven approach enabled obtaining fundamental ecological information (evolutionally-based life-history parameters) of the target species. Comparing the parameters among species will allow us to understand the mechanisms in determining life-history transition more deeply.
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Affiliation(s)
- Noriko Iwai
- Department of Environment Conservation, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo, 183-0054, Japan.
| | - Yuuya Tachiki
- Department of Biological Sciences, Tokyo Metropolitan University, 1-1, Minami-Osawa, Hachioji, Tokyo, 192-0397, Japan
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Wang B, Shao J, Qu L, Xu Q, Zheng D. The sequencing of the key genes and end products in the TLR4 signaling pathway from the kidney of Rana dybowskii exposed to Aeromonas hydrophila. Open Life Sci 2023; 18:20220704. [PMID: 37724117 PMCID: PMC10505344 DOI: 10.1515/biol-2022-0704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 07/06/2023] [Accepted: 07/30/2023] [Indexed: 09/20/2023] Open
Abstract
Infectious diseases caused by Aeromonas hydrophila (AH) have reduced the populations of Rana dybowskii). However, little is known about the immune response of R. dybowskii against AH infections. The toll-like receptor (TLR) signaling pathway has been identified as a critical component in innate immunity, responsible for identifying pathogen-associated molecular patterns in pathogens. Our study used the next-generation sequencing technique and single-molecule long-read sequencing to determine the structures of transcript isoforms and functions of genes in the kidneys of R. dybowskii, as well as identify and validate the related genes in the TLR4 signaling pathway. In total, 628,774 reads of inserts were identified, including 300,053 full-length non-chimeric reads and 233,592 non-full-length reads. Among the transcriptome sequences, 124 genes were identified as homologs of known genes in the TLR4 pathway especially inflammatory cytokines and receptors. Our findings shed light on the structures and functions of R. dybowskii genes exposed to AH and confirm the presence of both MyD88-dependent and independent pathways in R. dybowskii. Our work reveals how various functional proteins in amphibians at the initial stage of immune response are activated and complete their corresponding functions in a short time.
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Affiliation(s)
- Boju Wang
- College of Wildlife Resources, Northeast Forestry University, Harbin150040, China
| | - Jie Shao
- College of Wildlife Resources, Northeast Forestry University, Harbin150040, China
| | - Lili Qu
- College of Wildlife Resources, Northeast Forestry University, Harbin150040, China
| | - Qing Xu
- College of Wildlife Resources, Northeast Forestry University, Harbin150040, China
| | - Dong Zheng
- College of Wildlife Resources, Northeast Forestry University, Harbin150040, China
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Sugihara T, Matsui M, Sugahara T. A Comparison of Growth Patterns between Large- and Small-sized Rana tagoi (Amphibia: Ranidae) from Kitayama, Kyoto, Japan. CURRENT HERPETOLOGY 2022. [DOI: 10.5358/hsj.41.230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Hou J, Long J, Xiang J, Pan W, Li D, Liu X. Ontogenetic characteristics of the intestinal microbiota of
Quasipaa spinosa
revealed by
16S rRNA
gene sequencing. Lett Appl Microbiol 2022; 75:1182-1192. [DOI: 10.1111/lam.13786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 07/01/2022] [Accepted: 07/05/2022] [Indexed: 11/30/2022]
Affiliation(s)
- Jingliang Hou
- College of Animal Science and Technology Hunan Agricultural University Changsha Hunan China
| | - Jiahang Long
- Hunan Fisheries Science Institute Changsha Hunan China
| | - Jianguo Xiang
- College of Animal Science and Technology Hunan Agricultural University Changsha Hunan China
| | | | - Deliang Li
- College of Animal Science and Technology Hunan Agricultural University Changsha Hunan China
| | - Xinhua Liu
- College of Animal Science and Technology Hunan Agricultural University Changsha Hunan China
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Bensakhri Z, Bensouilah S, Zebsa R, Youcefi A, Amari H, Zouaimia A, Lazli A, Houhamdi M, Khelifa R. Trends to adaptation of the Sahara frog (Pelophylax saharicus) larvae across an environmental gradient. Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-022-01151-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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6
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Auxology of small samples: A method to describe child growth when restrictions prevent surveys. PLoS One 2022; 17:e0269420. [PMID: 35671303 PMCID: PMC9173602 DOI: 10.1371/journal.pone.0269420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Accepted: 05/20/2022] [Indexed: 11/19/2022] Open
Abstract
Background Child growth in populations is commonly characterised by cross-sectional surveys. These require data collection from large samples of individuals across age ranges spanning 1–20 years. Such surveys are expensive and impossible in restrictive situations, such as, e.g. the COVID pandemic or limited size of isolated communities. A method allowing description of child growth based on small samples is needed. Methods Small samples of data (N~50) for boys and girls 6–20 years old from different socio-economic situations in Africa and Europe were randomly extracted from surveys of thousands of children. Data included arm circumference, hip width, grip strength, height and weight. Polynomial regressions of these measurements on age were explored. Findings Polynomial curves based on small samples correlated well (r = 0.97 to 1.00) with results of surveys of thousands of children from same communities and correctly reflected sexual dimorphism and socio-economic differences. Conclusions Fitting of curvilinear regressions to small data samples allows expeditious assessment of child growth in a number of characteristics when situations change rapidly, resources are limited and access to children is restricted.
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Leung KW, Yang S, Wang X, Tang K, Hu J. Ecogeographical Adaptation Revisited: Morphological Variations in the Plateau Brown Frog along an Elevation Gradient on the Qinghai-Tibetan Plateau. BIOLOGY 2021; 10:biology10111081. [PMID: 34827074 PMCID: PMC8614741 DOI: 10.3390/biology10111081] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/11/2021] [Revised: 10/18/2021] [Accepted: 10/18/2021] [Indexed: 11/16/2022]
Abstract
Simple Summary A number of studies have explored how the body size and extremities of frogs vary in response to the changing environmental conditions across different geographical gradients, but the outcomes remain controversial. Here, we studied the morphological variations of the plateau brown frog (Rana kukunoris) along an elevation gradient (~1800–3500 m) on the eastern margin of the Qinghai–Tibetan Plateau to understand how environmental and biological factors affect them, and to assess whether these variations help to improve thermoregulation. Although we found that male and female frogs showed different variations in body size and extremities along the elevational gradient, both of them showed a significant decrease in the ratio of extremities to body size with increasing elevation. The decreasing ratio implies a gain of thermoregulatory benefits based on the ecogeographical rules. Moreover, the morphological variations were found to be strongly related to both environmental and biological factors. These results suggest that ecogeographical adaptation in frogs may be more complicated than other terrestrial vertebrate species. Most importantly, the adaptation should be viewed as a result of both environmental and biological factors, while it may also appear as an interactive change between body size and extremities. Abstract Several anurans have broad elevational and latitudinal distribution ranges; distinct species and populations may face various environmental and selection stresses. Due to their environmental sensitivity, adaptation is critical for the long-term persistence of anurans. Previous studies have tried to identify the ecogeographical pattern and its mechanism in anurans, suggesting different patterns, but the related explanatory mechanisms are yet to be generally supported and are suggested to be complicated. To explore the elusive mechanisms, we studied the morphological variation of the plateau brown frog (Rana kukunoris) along an elevational gradient on the eastern margin of the Qinghai–Tibetan Plateau. Using body size, extremity length, and the ratio between them (extremities/body size) as testing indicators, we examined potential ecogeographical adaptations and investigated how environmental and biological factors could shape the morphological development in R. kukunoris. We found that males and females showed different variations in body size and extremities along the elevational gradient, whereas both of them showed a decreasing extremities/body size ratio along elevation. Together with the strong correlations between environmental and biological factors and the morphometrics, we identified ecogeographical adaptation and a sexual difference in the selective pressures on the extremities and body size of the plateau brown frog. Our results imply that geographic variations in anuran morphological traits should be understood as an outcome of environmental and biological factors. Furthermore, ecogeographical adaptation in anurans can manifest as an interactive change between body size and extremities.
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Affiliation(s)
- Ka Wah Leung
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (K.W.L.); (S.Y.); (X.W.); (K.T.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shengnan Yang
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (K.W.L.); (S.Y.); (X.W.); (K.T.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaoyi Wang
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (K.W.L.); (S.Y.); (X.W.); (K.T.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ke Tang
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (K.W.L.); (S.Y.); (X.W.); (K.T.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Junhua Hu
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (K.W.L.); (S.Y.); (X.W.); (K.T.)
- Correspondence:
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Tong Q, Cui LY, Du XP, Hu ZF, Bie J, Xiao JH, Wang HB, Zhang JT. Comparison of Gut Microbiota Diversity and Predicted Functions Between Healthy and Diseased Captive Rana dybowskii. Front Microbiol 2020; 11:2096. [PMID: 32983063 PMCID: PMC7490342 DOI: 10.3389/fmicb.2020.02096] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2020] [Accepted: 08/10/2020] [Indexed: 01/26/2023] Open
Abstract
The gut microbiota plays a key role in host health, and disruptions to gut bacterial homeostasis can cause disease. However, the effect of disease on gut microbiota assembly remains unclear and gut microbiota-based predictions of health status is a promising yet poorly established field. Using Illumina high-throughput sequencing technology, we compared the gut microbiota between healthy (HA and HB) and diarrhoeic (DS) Rana dybowskii groups and analyzed the functional profiles through a phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) analysis. In addition, we estimated the correlation between gut microbiota structures and predicted the functional compositions. The results showed significant differences in the phylogenetic diversity (Pd), Shannon, and observed richness (Sobs) indices between the DS and HB groups, with significant differences observed in the gut microbiota composition between the DS group and the HA and HB groups. Linear discriminant analysis (LDA) effect size (LEfSe) results revealed that Proteobacteria were significantly enriched in the DS group; Bacteroidetes were significantly enriched in the HA and HB groups; and Aeromonas, Citrobacter, Enterococcus, Hafnia-Obesumbacterium, Morganella, Lactococcus, Providencia, Vagococcus, and Staphylococcus were significantly enriched in the DS group. Venn diagrams revealed that there were many more unique genera in the DS group than the HA and HB groups. Among 102 sensitive species selected using the indicator method, 33 indicated a healthy status and 69 (e.g., Acinetobacter, Aeromonas, Legionella, Morganella, Proteus, Providencia, Staphylococcus, and Vagococcus) indicated a diseased status. There was a significant and positive association between the composition and functional composition of the gut microbiota, thus indicating low functional redundancy of the frog gut bacterial community. Rana dybowskii disease was associated with changes in the gut microbiota, which subsequently disrupted bacterial-mediated functions. The results of this study can aid in revealing the effect of the R. dybowskii gut microbiota on host health and provide a basis for elucidating the mechanism of the occurrence of R. dybowskii disease.
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Affiliation(s)
- Qing Tong
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China.,Jiamusi Branch of Heilongjiang Academy of Forestry Sciences, Jiamusi, China
| | - Li-Yong Cui
- Jiamusi Branch of Heilongjiang Academy of Forestry Sciences, Jiamusi, China
| | - Xiao-Peng Du
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Zong-Fu Hu
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Jia Bie
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Jian-Hua Xiao
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Hong-Bin Wang
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Jian-Tao Zhang
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
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Tong Q, Du XP, Hu ZF, Cui LY, Bie J, Zhang QZ, Xiao JH, Lin Y, Wang HB. Comparison of the gut microbiota of Rana amurensis and Rana dybowskii under natural winter fasting conditions. FEMS Microbiol Lett 2020; 366:5645232. [PMID: 31778183 DOI: 10.1093/femsle/fnz241] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 11/27/2019] [Indexed: 01/02/2023] Open
Abstract
Rana amurensis and R. dybowskii occupy similar habitats. As temperatures decrease with the onset of winter, both species migrate to ponds for hibernation. Our goal was to determine whether different species possess different intestinal microbiota under natural winter fasting conditions. We used high-throughput Illumina sequencing of 16S rRNA gene sequences to analyse the diversity of intestinal microbes in the two species. The dominant gut bacterial phyla in both species were Bacteroidetes, Proteobacteria and Firmicutes. Linear discriminant analysis (LDA) effect size revealed significant enrichment of Proteobacteria in R. amurensis and Firmicutes in R. dybowskii. There were significant differences in the gut microbiota composition between the species. The core operational taxonomic unit numbers in R. amurensis and R. dybowskii shared by the two species were 106, 100 and 36. This study indicates that the intestinal bacterial communities of the two frog species are clearly different. Phylum-level analysis showed that R. amurensis was more abundant in Proteobacteria and Verrucomicrobia than R. dybowskii was This is the first study of the composition and diversity of the gut microbiota of these two species, providing important insights for future research on the gut microbiota and the role of these bacterial communities in frogs.
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Affiliation(s)
- Qing Tong
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China.,Hejiang Forestry Research Institute of Heilongjiang Province, Jiamusi, China
| | - Xiao-Peng Du
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Zong-Fu Hu
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Li-Yong Cui
- Hejiang Forestry Research Institute of Heilongjiang Province, Jiamusi, China
| | - Jia Bie
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Qian-Zhen Zhang
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Jian-Hua Xiao
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Yu Lin
- Shenzhen Withsum Technology Limited, Shenzhen 518031, China
| | - Hong-Bin Wang
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
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Tong Q, Hu ZF, Du XP, Bie J, Wang HB. Effects of Seasonal Hibernation on the Similarities Between the Skin Microbiota and Gut Microbiota of an Amphibian (Rana dybowskii). MICROBIAL ECOLOGY 2020; 79:898-909. [PMID: 31820074 DOI: 10.1007/s00248-019-01466-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Accepted: 11/14/2019] [Indexed: 06/10/2023]
Abstract
Both the gut and skin microbiotas have important functions for amphibians. The gut microbiota plays an important role in both the health and evolution of the host species, whereas the role of skin microbiota in disease resistance is particularly important for amphibians. Many studies have examined the effects of environmental factors on the skin and gut microbiotas, but no study has yet explored the similarities between the skin and gut microbiotas. In this study, the gut and skin microbiotas of Rana dybowskii in summer and winter were investigated via high-throughput Illumina sequencing. The results showed that the alpha diversity of gut and skin microbiotas decreased significantly from summer to winter. In both seasons, the microbial composition and structure differed significantly between the gut and skin, and the similarities between these microbiotas differed between seasons. The pairwise distances between the gut and skin microbiotas were greater in winter than in summer. The ratio of core OTUs and shared OTUs to the sum of the OTUs in the gut and skin microbiotas in summer was significantly higher than that in winter. The similarities between the gut and skin microbiotas are important for understanding amphibian ecology and life history.
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Affiliation(s)
- Qing Tong
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, People's Republic of China
- Key Laboratory of the Provincial Education Department of Heilongjiang for Common Animal Disease Prevention and Treatment, Harbin, 150030, China
| | - Zong-Fu Hu
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, People's Republic of China
| | - Xiao-Peng Du
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, People's Republic of China
| | - Jia Bie
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, People's Republic of China
| | - Hong-Bin Wang
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, People's Republic of China.
- Key Laboratory of the Provincial Education Department of Heilongjiang for Common Animal Disease Prevention and Treatment, Harbin, 150030, China.
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Bie J, Tong Q, Liu X, Zhang X, Wang H. Comparative analysis of cutaneous bacterial communities of farmed Rana dybowskii after gentamycin bath. PeerJ 2020; 8:e8430. [PMID: 31998565 PMCID: PMC6977512 DOI: 10.7717/peerj.8430] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Accepted: 12/18/2019] [Indexed: 12/17/2022] Open
Abstract
Introduction Pathogenic bacteria limit the success of Rana dybowskii breeding. Gentamicin is used to treat R. dybowskii disease. To understand the effects of gentamicin on the composition and structure of the cutaneous bacterial community of R. dybowskii, three groups (control, gentamicin and recovery) were established in this study. Materials & Methods The V3-V4 hypervariable region of the 16S rRNA gene was analyzed in samples by high-throughput sequencing. Alpha diversity and beta diversity were evaluated to compare the cutaneous bacterial community diversity. Results A total of 1,159,668 valid sequences and 3,132 operational taxonomic units (OTUs) were obtained from these three experimental groups. The number of OTUs obtained in the control group, gentamicin group and recovery group were 2,194, 2,288, and 2,047, respectively, and the number of shared OTUs was 1,313. The alpha diversity of the cutaneous bacterial community was not significantly affected by gentamicin, while beta diversity was significantly affected. Discussion & Conclusions The effect of a gentamicin bath on relative species abundance was greater than the effect on the species composition. The changes in Proteobacteria, Acinetobacter, and Chryseobacterium were significant, and reductions were observed after the recovery period. Six potentially pathogenic genera were detected, including Aeromonas, Citrobacter, Chryseobacterium, Pseudomonas, Staphylococcus, and Streptococcus. Among them, Aeromonas and Chryseobacterium were significantly inhibited by the gentamicin bath. The results of this study provide a theoretical basis for the application of gentamicin in R. dybowskii breeding.
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Affiliation(s)
- Jia Bie
- Northeast Agricultural University, Harbin, China
| | - Qing Tong
- Northeast Agricultural University, Harbin, China
| | - Xiaoning Liu
- Northeast Agricultural University, Harbin, China
| | | | - Hongbin Wang
- Northeast Agricultural University, Harbin, China
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Tong Q, Liu XN, Hu ZF, Ding JF, Bie J, Wang HB, Zhang JT. Effects of Captivity and Season on the Gut Microbiota of the Brown Frog ( Rana dybowskii). Front Microbiol 2019; 10:1912. [PMID: 31507549 PMCID: PMC6716059 DOI: 10.3389/fmicb.2019.01912] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Accepted: 08/05/2019] [Indexed: 12/14/2022] Open
Abstract
The gut microbiota of amphibians is affected by exogenous and endogenous factors. We performed a comprehensive analysis using high-throughput sequencing technology and functional predictions and observed general changes in the gut microbiota of frogs in different growth stages, seasons, and growth environments. There were no significant differences in microbial richness and diversity between juvenile and adult wild frogs, between the summer and autumn groups of captive frogs, or between wild and captive frogs. There were significant differences in the gut microbiota community structure of Rana dybowskii between the summer and autumn groups of captive frogs and between wild and captive R. dybowskii, whereas the differences between juvenile and adult wild frogs were not significant. The dominant gut bacterial phyla in frogs from both captive and wild environments included Firmicutes, Bacteroidetes, Proteobacteria, and Actinobacteria. Linear discriminant effect size (LEfSe) analysis showed that Bacteroidetes and Firmicutes were significantly enriched in captive and wild R. dybowskii, respectively linear discriminant analysis (LDA > 4). The core operational taxonomical units (OTUs) that were found in >90% of all frogs tested encompassed 15 core OTUs. The captive frogs exhibited 15 core OTUs in addition to the above overall core microbiota, whereas the wild frogs exhibited 19 core OTUs in addition to the above overall core microbiota. Predictions made using Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) suggested that eleven KEGG pathways, such as infectious diseases, immune system diseases, metabolism, metabolism of other amino acids, metabolism of cofactors and vitamins, metabolism of terpenoids and polyketides, neurodegenerative diseases, and transport and catabolism, were enriched in captive frogs. The relative abundance of several red-leg-syndrome-related pathogens increased significantly in captive frogs compared with that in wild frogs. To our knowledge, this is the first study on the effects of individual seasons and captivity on the gut microbiota of frogs.
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Affiliation(s)
- Qing Tong
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Xiao-Ning Liu
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Zong-Fu Hu
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Jia-Feng Ding
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Jia Bie
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Hong-Bin Wang
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
| | - Jian-Tao Zhang
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, China
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