Stream acidification and reduced aquatic prey availability are associated with dietary shifts in an obligate riparian Neotropical migratory songbird

Effects of competition and predation operating at individual and population levels: an overview of results from a long-term field experiment

After an overview of the discussion about the existence of intra- and interspecific competition that illustrates the contradictory opinions I conclude that long-term field experiments are needed for firm conclusions. I discuss in some detail the role of two factors that limit population size of secondary cavity nesting birds e.g. territorial behavior and adequate cavities. This is followed by an overview of experimental long-term field studies in Belgium showing that intra- and interspecific competition in a great tit-blue tit system exists. By using nestbox configurations with high densities of nestboxes that differ in the diameter of their entrance hole in replicate study plots it is possible to manipulate the breeding densities of great tit Parus major and blue tit Cyanistes caeruleus independently, thereby varying the intensity of intra- and interspecific competition between these two coexisting species. When blue tit densities are experimentally increased local recruitment of great tits increases, and adult great tit post-breeding dispersal to other study plots decreases, implying that great tits use blue tit density to evaluate habitat quality and that high blue tit density results in heterospecific attraction. The reverse is not true. An experimental increase in great tit density leading to an increase in interspecific competition in a plot where blue tit density was already high leads to a decrease in blue tit nestling mass (illustrating interspecific competition for food), but to a gradual increase in blue tit body size. Both are primarily caused by an increase in the body size of immigrants (caused by intraspecific competition for protected roosting holes) in contrast to the control plot, where neither is observed. I also summarize behavioral, ecological and possible evolutionary effects of sparrowhawks on blue tits after sparrowhawks settled in an isolated study plot halfway through the study: adult survival substantially decreased for both sexes, but more for females that laid large clutches, leading to selection for females that laid a smaller clutch. This led to a change in the reproduction/survival life-history trade-off. Adult winter weights and nestling weights decreased, and the heaviest fledglings were selected against. Furthermore the frequency of polygyny increased. The long-term experiments also document the role of the use of public information and that species that compete can be attracted to sites in which competitor density is high.

Imidacloprid exposure is detectable in over one third of wild bird samples from diverse Texas ecoregions

Avian decline is occurring globally with neonicotinoid insecticides posed as a potentially contributing factor. Birds can be exposed to neonicotinoids through coated seeds, soil, water, and insects, and experimentally exposed birds show varied adverse effects including mortality and disruption of immune, reproductive, and migration physiology. However, few studies have characterized exposure in wild bird communities over time. We hypothesized that neonicotinoid exposure would vary temporally and based on avian ecological traits. Birds were banded and blood sampled at eight non-agricultural sites across four Texas counties. Plasma from 55 species across 17 avian families was analyzed for the presence of 7 neonicotinoids using high performance liquid chromatography-tandem mass spectrometry. Imidacloprid was detected in 36 % of samples (n = 294); this included quantifiable concentrations (12 %; 10.8-36,131 pg/mL) and concentrations that were below the limit of quantification (25 %). Additionally, two birds were exposed to imidacloprid, acetamiprid (18,971.3 and 6844 pg/mL) and thiacloprid (7022.2 and 17,367 pg/mL), whereas no bird tested positive for clothianidin, dinotefuran, nitenpyram, or thiamethoxam, likely reflecting higher limits of detection for all compounds compared to imidacloprid. Birds sampled in spring and fall had higher incidences of exposure than those sampled in summer or winter. Subadult birds had higher incidences of exposure than adult birds. Among the species for which we tested more than five samples, American robin (Turdus migratorius) and red-winged blackbird (Agelaius phoeniceus) had significantly higher incidences of exposure. We found no relationships between exposure and foraging guild or avian family, suggesting birds with diverse life histories and taxonomies are at risk. Of seven birds resampled over time, six showed neonicotinoid exposure at least once with three showing exposures at multiple time points, indicating continued exposure. This study provides exposure data to inform ecological risk assessment of neonicotinoids and avian conservation efforts.

Two is better than one: Coupling DNA metabarcoding and stable isotope analysis improves dietary characterizations for a riparian-obligate, migratory songbird

While an increasing number of studies are adopting molecular and chemical methods for dietary characterization, these studies often employ only one of these laboratory-based techniques; this approach may yield an incomplete, or even biased, understanding of diet due to each method's inherent limitations. To explore the utility of coupling molecular and chemical techniques for dietary characterizations, we applied DNA metabarcoding alongside stable isotope analysis to characterize the dietary niche of breeding Louisiana waterthrush (Parkesia motacilla), a migratory songbird hypothesized to preferentially provision its offspring with pollution-intolerant, aquatic arthropod prey. While DNA metabarcoding was unable to determine if waterthrush provision aquatic and terrestrial prey in different abundances, we found that specific aquatic taxa were more likely to be detected in successive seasons than their terrestrial counterparts, thus supporting the aquatic specialization hypothesis. Our isotopic analysis added greater context to this hypothesis by concluding that breeding waterthrush provisioned Ephemeroptera and Plecoptera, two pollution-intolerant, aquatic orders, in higher quantities than other prey groups, and expanded their functional trophic niche when such prey were not abundantly provisioned. Finally, we found that the dietary characterizations from each approach were often uncorrelated, indicating that the results gleaned from a diet study can be particularly sensitive to the applied methodologies. Our findings contribute to a growing body of work indicating the importance of high-quality, aquatic habitats for both consumers and their pollution-intolerant prey, while also demonstrating how the application of multiple, laboratory-based techniques can provide insights not offered by either technique alone.

Integrating DNA-based Prey Occurrence Probability Into Stable Isotope Mixing Models

The introduction of laboratory methods to animal dietary studies has allowed researchers to obtain results with accuracy and precision not possible with observational techniques. For example, DNA barcoding, or the identification of prey with taxon-specific DNA sequences, allows researchers to classify digested prey tissues to the species-level, while stable isotope analysis paired with Bayesian mixing models can quantify dietary contributions by comparing a consumer's isotopic values to those derived from their prey. However, DNA-based methods are currently only able to classify, but not quantify, the taxa present in a diet sample, while stable isotope analysis can only quantify dietary taxa that are identified a priori as prey isotopic values are a result of life history traits, not phylogenetic relatedness. Recently, researchers have begun to couple these techniques in dietary studies to capitalize on the reciprocal benefits and drawbacks offered by each approach, with some even integrating DNA-based results directly into Bayesian mixing models as informative priors. As the informative priors used in these models must represent known dietary compositions (e.g., percentages of prey biomasses), researchers have scaled the DNA-based frequency of occurrence of major prey groups so that their normalized frequency of occurrence sums to 100%. Unfortunately, such an approach is problematic as priors stemming from binomial, DNA-based data do not truly reflect quantitative information about the consumer's diet and may skew the posterior distribution of prey quantities as a result. Therefore, we present a novel approach to incorporate DNA-based dietary information into Bayesian stable isotope mixing models that preserves the binomial nature of DNA-based results. This approach uses community-wide frequency of occurrence or logistic regression-based estimates of prey occurrence to dictate the probability that each prey group is included in each mixing model iteration, and, in turn, the probability that each iteration's results are included in the posterior distribution of prey composition possibilities. Here, we demonstrate the utility of this method by using it to quantify the prey composition of nestling Louisiana waterthrush (Parkesia motacilla).

Weather effects on breeding parameters of two insectivorous passerines in a polluted area

Direct and indirect effects of environmental pollution affect negatively to birds' breeding performance in both urban and industrial environments, but much less is known on how pollution and natural stress factors work together. In our long-term study (1991-2018), we explored whether industrial pollution and associated habitat changes increase the sensitivity of breeding parameters (hatching and fledging success, nestling growth) to temperature and precipitation in two insectivorous bird species, the great tit (Parus major) and the pied flycatcher (Ficedula hypoleuca). We found that both species are rather weather sensitive in terms of their fledging success, but especially in the F. hypoleuca, the negative effect was strengthened in a polluted environment. For both study species, all the breeding parameters, except growth of F. hypoleuca nestlings, were inferior in the polluted area and negatively affected by cold weather. Independent of pollution, the duration of rainy spells during the nestling period had an overall negative effect on fledging success of F. hypoleuca, and this effect became stronger at cold temperatures. The length of rainy spells was, however, positively associated with nestling wing length in both species, possibly because of better availability of some important food resources for wing growth in more humid conditions. The weather-pollution interactions in our study populations were not overwhelmingly strong, but those found in F. hypoleuca show that such interactions exist, they are species-specific and in our study system most likely associated to pollution-related resource (e.g. food) limitation. Higher sensitivity of F. hypoleuca to low temperatures is likely related to its less well-insulated nests and higher dependence on aerial prey, the availability of which is especially reduced during cold and rainy spells. Our study indicates that anthropogenic stress, such as pollution, has synergistic effects with natural stress factors affecting passerine birds' breeding performance.

Gradients in richness and turnover of a forest passerine's diet prior to breeding: A mixed model approach applied to faecal metabarcoding data

Rather little is known about the dietary richness and variation of generalist insectivorous species, including birds, due primarily to difficulties in prey identification. Using faecal metabarcoding, we provide the most comprehensive analysis of a passerine's diet to date, identifying the relative magnitudes of biogeographic, habitat and temporal trends in the richness and turnover in diet of Cyanistes caeruleus (blue tit) along a 39 site and 2° latitudinal transect in Scotland. Faecal samples were collected in 2014-2015 from adult birds roosting in nestboxes prior to nest building. DNA was extracted from 793 samples and we amplified COI and 16S minibarcodes. We identified 432 molecular operational taxonomic units that correspond to putative dietary items. Most dietary items were rare, with Lepidoptera being the most abundant and taxon-rich prey order. Here, we present a statistical approach for estimation of gradients and intersample variation in taxonomic richness and turnover using a generalised linear mixed model. We discuss the merits of this approach over existing tools and present methods for model-based estimation of repeatability, taxon richness and Jaccard indices. We found that dietary richness increases significantly as spring advances, but changes little with elevation, latitude or local tree composition. In comparison, dietary composition exhibits significant turnover along temporal and spatial gradients and among sites. Our study shows the promise of faecal metabarcoding for inferring the macroecology of food webs, but we also highlight the challenge posed by contamination and make recommendations of laboratory and statistical practices to minimise its impact on inference.