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Xu G, Guo H, Yu Z, Wang S, Shen D, Yang L, Wu J, Chen B, Yu H. Crystal structure of lipase from Pseudomonas aeruginosa reveals an unusual catalytic triad conformation. Structure 2024:S0969-2126(24)00232-6. [PMID: 39025068 DOI: 10.1016/j.str.2024.06.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 02/01/2024] [Accepted: 06/20/2024] [Indexed: 07/20/2024]
Abstract
The Pseudomonas aeruginosa lipase PaL catalyzes the stereoselective hydrolysis of menthyl propionate to produce L-menthol. The lack of a three-dimensional structure of PaL has so far prevented a detailed understanding of its stereoselective reaction mechanism. Here, the crystal structure of PaL was determined at a resolution of 1.80 Å by single-wavelength anomalous diffraction. In the apo-PaL structure, the catalytic His302 is located in a long loop on the surface that is solvent exposed. His302 is distant from the other two catalytic residues, Asp274 and Ser164. This configuration of catalytic residues is unusual for lipases. Using metadynamics simulations, we observed that the enzyme undergoes a significant conformational change upon ligand binding. We also explored the catalytic and stereoselectivity mechanisms of PaL by all-atom molecular dynamics simulations. These findings could guide the engineering of PaL with an improved diastereoselectivity for L-menthol production.
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Affiliation(s)
- Gang Xu
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, Zhejiang, China
| | - Hua Guo
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, Zhejiang, China; ZJU-Hangzhou Global Scientific and Technological Innovation Centre, Hangzhou 311200, Zhejiang, China
| | - Zhonglang Yu
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, Zhejiang, China
| | - Shulin Wang
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, Zhejiang, China
| | - Dandan Shen
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, Zhejiang, China
| | - Lirong Yang
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, Zhejiang, China; ZJU-Hangzhou Global Scientific and Technological Innovation Centre, Hangzhou 311200, Zhejiang, China
| | - Jianping Wu
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, Zhejiang, China; ZJU-Hangzhou Global Scientific and Technological Innovation Centre, Hangzhou 311200, Zhejiang, China
| | - Binbin Chen
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, Zhejiang, China; ZJU-Hangzhou Global Scientific and Technological Innovation Centre, Hangzhou 311200, Zhejiang, China.
| | - Haoran Yu
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, Zhejiang, China; ZJU-Hangzhou Global Scientific and Technological Innovation Centre, Hangzhou 311200, Zhejiang, China.
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Ali S, Khan SA, Hamayun M, Lee IJ. The Recent Advances in the Utility of Microbial Lipases: A Review. Microorganisms 2023; 11:microorganisms11020510. [PMID: 36838475 PMCID: PMC9959473 DOI: 10.3390/microorganisms11020510] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 02/06/2023] [Accepted: 02/06/2023] [Indexed: 02/19/2023] Open
Abstract
Lipases are versatile biocatalysts and are used in different bioconversion reactions. Microbial lipases are currently attracting a great amount of attention due to the rapid advancement of enzyme technology and its practical application in a variety of industrial processes. The current review provides updated information on the different sources of microbial lipases, such as fungi, bacteria, and yeast, their classical and modern purification techniques, including precipitation and chromatographic separation, the immunopurification technique, the reversed micellar system, aqueous two-phase system (ATPS), aqueous two-phase flotation (ATPF), and the use of microbial lipases in different industries, e.g., the food, textile, leather, cosmetics, paper, and detergent industries. Furthermore, the article provides a critical analysis of lipase-producing microbes, distinguished from the previously published reviews, and illustrates the use of lipases in biosensors, biodiesel production, and tea processing, and their role in bioremediation and racemization.
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Affiliation(s)
- Sajid Ali
- Department of Horticulture and Life Science, Yeungnam University, Gyeongsan 38541, Republic of Korea
| | - Sumera Afzal Khan
- Centre of Biotechnology and Microbiology, University of Peshawar, Peshawar 25120, Pakistan
| | - Muhammad Hamayun
- Department of Botany, Garden Campus, Abdul Wali Khan University Mardan, Mardan 23200, Pakistan
- Correspondence: (M.H.); (I.-J.L.)
| | - In-Jung Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea
- Correspondence: (M.H.); (I.-J.L.)
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Sundaramahalingam MA, Amrutha C, Sivashanmugam P, Rajeshbanu J. An encapsulated report on enzyme-assisted transesterification with an allusion to lipase. 3 Biotech 2021; 11:481. [PMID: 34790505 PMCID: PMC8557240 DOI: 10.1007/s13205-021-03003-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 09/26/2021] [Indexed: 10/19/2022] Open
Abstract
Biodiesel is a renewable, sulfur-free, toxic-free, and low carbon fuel which possesses enhanced lubricity. Transesterification is the easiest method employed for the production of biodiesel, in which the oil is transformed into biodiesel. Biocatalyst-mediated transesterification is more advantageous than chemical process because of its non-toxic nature, the requirement of mild reaction conditions, absence of saponification, easy product recovery, and production of high-quality biodiesel. Lipases are found to be the primary enzymes in enzyme-mediated transesterification process. Currently, researchers are using lipases as biocatalyst for transesterification. Lipases are extracted from various sources such as plants, microbes, and animals. Biocatalyst-based biodiesel production is not yet commercialized due to high-cost of purified enzymes and higher reaction time for the production process. However, research works are growing in the area of various cost-effective techniques for immobilizing lipase to improve its reusability. And further reduction in the production cost of lipases can be achieved by genetic engineering techniques. The reduction in reaction time can be achieved through ultrasonic-assisted biocatalytic transesterification. Biodiesel production by enzymatic transesterification is affected by many factors. Various methods have been developed to control these factors and improve biodiesel production. This report summarizes the various sources of lipase, various production strategies for lipase and the lipase-mediated transesterification. It is fully focused on the lipase enzyme and its role in biodiesel production. It also covers the detailed explanation of various influencing factors, which affect the lipase-mediated transesterification along with the limitations and scope of lipase in biodiesel production.
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Affiliation(s)
- M. A. Sundaramahalingam
- Chemical and Biochemical Process Engineering Laboratory, Department of Chemical Engineering, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015 India
| | - C. Amrutha
- Chemical and Biochemical Process Engineering Laboratory, Department of Chemical Engineering, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015 India
| | - P. Sivashanmugam
- Chemical and Biochemical Process Engineering Laboratory, Department of Chemical Engineering, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015 India
| | - J. Rajeshbanu
- Department of Life Sciences, Central University of Tamil Nadu, Neelakudi, Thiruvarur, Tamil Nadu 610 005 India
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Soares JL, Cammarota MC, Gutarra MLE, Volschan I. Reduction of scum accumulation through the addition of low-cost enzymatic extract in the feeding of high-rate anaerobic reactor. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2019; 80:67-74. [PMID: 31461423 DOI: 10.2166/wst.2019.247] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
This work evaluates the reduction of scum accumulation on the top surface of upflow anaerobic sludge blanket (UASB) reactors by the addition of hydrolytic enzymes in their feed. For over 1 year, two UASB reactors of 1.4 L were maintained at 30 °C and continuously fed with synthetic domestic wastewater (containing 150 mg/L of soybean oil) under a hydraulic retention time of 10 h. The Control reactor was only fed with synthetic wastewater. Beginning at the 226th day of operation, low-cost hydrolytic enzymes (obtained by solid-state fermentation of Aspergillus terreus, a fungus isolated from a primary sewage sludge) were added into the feed of the other reactor (Test) for a lipase activity of 24 U/L, considerably reducing the formation of scum. In the Test reactor, the scum showed oil and grease (O&G) concentration between 0.8 and 1.3 g/L and an accumulation rate of 20 to 27 mg O&G/d. In the Control reactor, the scum had values twice as high (1.5-2.5 g/L and 34-51 mg O&G/d, respectively) and there were more operational problems. During the entire period of operation, both reactors presented high chemical oxygen demand removal (>80%), with no loss of effluent quality due to the addition of the enzymes.
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Affiliation(s)
- Juliana Lemos Soares
- Environmental Engineering Program, Federal University of Rio de Janeiro, Cidade Universitária, Av. Athos da Silveira Ramos, n° 149, Bl. A, Sl. 8, Ilha do Fundão, 21941-909 Rio de Janeiro, Brazil E-mail:
| | - Magali Christe Cammarota
- Environmental Engineering Program, Federal University of Rio de Janeiro, Cidade Universitária, Av. Athos da Silveira Ramos, n° 149, Bl. A, Sl. 8, Ilha do Fundão, 21941-909 Rio de Janeiro, Brazil E-mail:
| | - Melissa Limoeiro Estrada Gutarra
- Environmental Engineering Program, Federal University of Rio de Janeiro, Cidade Universitária, Av. Athos da Silveira Ramos, n° 149, Bl. A, Sl. 8, Ilha do Fundão, 21941-909 Rio de Janeiro, Brazil E-mail:
| | - Isaac Volschan
- Environmental Engineering Program, Federal University of Rio de Janeiro, Cidade Universitária, Av. Athos da Silveira Ramos, n° 149, Bl. A, Sl. 8, Ilha do Fundão, 21941-909 Rio de Janeiro, Brazil E-mail:
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