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Uematsu K, Yang MM, Amos W, Foster WA. Eusocial evolution without a nest: kin structure of social aphids forming open colonies on bamboo. Behav Ecol Sociobiol 2023. [DOI: 10.1007/s00265-023-03315-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/30/2023]
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Fan H, Guo W. A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species. PeerJ 2018; 6:e4495. [PMID: 29576965 PMCID: PMC5857172 DOI: 10.7717/peerj.4495] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Accepted: 02/21/2018] [Indexed: 01/26/2023] Open
Abstract
Mutation rate is usually found to covary with many life history traits of animals such as body mass, which has been readily explained by the higher number of mutation opportunities per unit time. Although the precise reason for the pattern is not yet clear, to determine the universality of this pattern, we tested whether life history traits impact another form of genetic mutation, the motif mismatches in microsatellites. Employing published genome sequences from 65 avian species, we explored the motif mismatches patterns of microsatellites in birds on a genomic level and assessed the relationship between motif mismatches and body mass in a phylogenetic context. We found that small-bodied species have a higher average mismatches and we suggested that higher heterozygosity in imperfect microsatellites lead to the increase of motif mismatches. Our results obtained from this study imply that a negative body mass trend in mutation rate may be a general pattern of avian molecular evolution.
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Affiliation(s)
- Haiying Fan
- Department of Ecology, College of Life Sciences, Wuhan University, Wuhan, China
| | - Weibin Guo
- Department of Ecology, College of Life Sciences, Wuhan University, Wuhan, China
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Park JY, An YR, An CM, Kang JH, Kim EM, Kim H, Cho S, Kim J. Evolutionary constraints over microsatellite abundance in larger mammals as a potential mechanism against carcinogenic burden. Sci Rep 2016; 6:25246. [PMID: 27125812 PMCID: PMC4850439 DOI: 10.1038/srep25246] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Accepted: 04/08/2016] [Indexed: 12/29/2022] Open
Abstract
Larger organisms tend to live longer, have more potentially carcinogenic cells, and undergo more cell divisions. While one might intuitively expect cancer incidence to scale with body size, this assertion does not hold over the range of different mammals. Explaining this lack of correlation, so-called 'Peto's paradox' can likely increase our understanding of how cancer defense mechanisms are shaped by natural selection. Here, we study the occurrence of microsatellite in mammal genomes and observe that animals with expanded body size restrain the number of microsatellite. To take into account of higher mutation rate in the microsatellite region compared to that of genome, limiting the abundance of somatic mutations might explain how larger organisms could overcome the burden of cancer. These observations may serve as the basis to better understand how evolution has modeled protective mechanisms against cancer development.
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Affiliation(s)
- Jung Youn Park
- Biotechnology Research Division, National Fisheries Research & Development Institute, Gijang gun, Busan, 619-705, Republic of Korea
| | - Yong-Rock An
- Cetacean Research Institute, National Fisheries Research & Development Institute, Nam-gu, Ulsan 680-050, Republic of Korea
| | - Chul-Min An
- Biotechnology Research Division, National Fisheries Research & Development Institute, Gijang gun, Busan, 619-705, Republic of Korea
| | - Jung-Ha Kang
- Biotechnology Research Division, National Fisheries Research & Development Institute, Gijang gun, Busan, 619-705, Republic of Korea
| | - Eun Mi Kim
- Biotechnology Research Division, National Fisheries Research & Development Institute, Gijang gun, Busan, 619-705, Republic of Korea
| | - Heebal Kim
- Department of Agricultural Biotechnology, Seoul National University, Seoul 151-921, Republic of Korea
- Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 151-742, Republic of Korea
- C&K Genomics, Seoul National University Research Park, Seoul 151-919, Republic of Korea
| | - Seoae Cho
- C&K Genomics, Seoul National University Research Park, Seoul 151-919, Republic of Korea
| | - Jaemin Kim
- National Human Genome Research Institute, National Institutes of Health, Bethesda MD 20892, USA
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