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Diodato N, Ljungqvist FC, Bellocchi G. Historical information sheds new light on the intensification of flooding in the Central Mediterranean. Sci Rep 2023; 13:10664. [PMID: 37393322 DOI: 10.1038/s41598-023-37683-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 06/26/2023] [Indexed: 07/03/2023] Open
Abstract
Hydrological disasters, such as floods, can have dire consequences for human societies. Historical information plays a key role in detecting whether particular types of hydrological disasters have increased in frequency and/or magnitude and, if so, they are more likely attributable to natural or human-induced climatic and other environmental changes. The identification of regions with similar flood conditions is essential for the analysis of regional flooding regimes. To this end, we here present the longest existing flood reconstruction for the Eastern Liguria Area (ELA) in northwestern Italy, covering 1582 to 2022 CE, which offers a case study representative of the central Mediterranean region. An Annual Flood Intensification Index was developed to transform the historical data into a continuous annual hydrological time-series contained by a homogeneous data structure for the study-area. We found two change-points (trend breaks) in the reconstructed time-series, in 1787 and 1967, with only occasional heavy floods comparable to present-day disasters occurring before the first change-point, and an increasing intensification of floods after the second change-point up to the present day. The recent intensification of flooding in the ELA, associated with changes in land use and land cover, also appears to coincide with phases in which hydrological hazards have become more changeable and extreme in disaster-affected areas. This is evidenced by river basin responses to human-induced disturbances.
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Affiliation(s)
- Nazzareno Diodato
- Met European Research Observatory - International Affiliates Program of the University Corporation for Atmospheric Research, Benevento, Italy
| | - Fredrik Charpentier Ljungqvist
- Department of History, Stockholm University, 106 91, Stockholm, Sweden.
- Bolin Centre for Climate Research, Stockholm University, 106 91, Stockholm, Sweden.
- Swedish Collegium for Advanced Study, Linneanum, Thunbergsvägen 2, 752 38, Uppsala, Sweden.
| | - Gianni Bellocchi
- Met European Research Observatory - International Affiliates Program of the University Corporation for Atmospheric Research, Benevento, Italy
- Université Clermont Auvergne, INRAE, VetAgro Sup, UREP, Clermont-Ferrand, France
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2
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Brilli L, Martin R, Argenti G, Bassignana M, Bindi M, Bonet R, Choler P, Cremonese E, Della Vedova M, Dibari C, Filippa G, Galvagno M, Leolini L, Moriondo M, Piccot A, Stendardi L, Targetti S, Bellocchi G. Uncertainties in the adaptation of alpine pastures to climate change based on remote sensing products and modelling. J Environ Manage 2023; 336:117575. [PMID: 36893538 DOI: 10.1016/j.jenvman.2023.117575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 02/02/2023] [Accepted: 02/22/2023] [Indexed: 06/18/2023]
Abstract
Over the last century, the management of pastoral systems has undergone major changes to meet the livelihood needs of alpine communities. Faced with the changes induced by recent global warming, the ecological status of many pastoral systems has seriously deteriorated in the western alpine region. We assessed changes in pasture dynamics by integrating information from remote-sensing products and two process-based models, i.e. the grassland-specific, biogeochemical growth model PaSim and the generic crop-growth model DayCent. Meteorological observations and satellite-derived Normalised Difference Vegetation Index (NDVI) trajectories of three pasture macro-types (high, medium and low productivity classes) in two study areas - Parc National des Écrins (PNE) in France and Parco Nazionale Gran Paradiso (PNGP) in Italy - were used as a basis for the model calibration work. The performance of the models was satisfactory in reproducing pasture production dynamics (R2 = 0.52 to 0.83). Projected changes in alpine pastures due to climate-change impacts and adaptation strategies indicate that: i) the length of the growing season is expected to increase between 15 and 40 days, resulting in changes in the timing and amount of biomass production, ii) summer water stress could limit pasture productivity; iii) earlier onset of grazing could enhance pasture productivity; iv) higher livestock densities could increase the rate of biomass regrowth, but major uncertainties in modelling processes need to be considered; and v) the carbon sequestration potential of pastures could decrease under limited water availability and warming.
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Affiliation(s)
- L Brilli
- National Research Council - Institute of BioEconomy (IBE-CNR), 50145, Sesto Fiorentino, Italy; University of Florence, DAGRI, 50144, Florence, Italy.
| | - R Martin
- Université Clermont Auvergne, INRAE, VetAgro Sup, UREP, 63000, Clermont-Ferrand, France
| | - G Argenti
- University of Florence, DAGRI, 50144, Florence, Italy
| | | | - M Bindi
- University of Florence, DAGRI, 50144, Florence, Italy
| | - R Bonet
- Parc National des Ecrins, Domaine de Charance, 05000, Gap, France
| | - P Choler
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, 38000, Grenoble, France
| | - E Cremonese
- Climate Change Unit, Environmental Protection Agency of Aosta Valley, Saint-Christophe, Italy
| | - M Della Vedova
- Parc National des Ecrins, Domaine de Charance, 05000, Gap, France
| | - C Dibari
- University of Florence, DAGRI, 50144, Florence, Italy
| | - G Filippa
- Climate Change Unit, Environmental Protection Agency of Aosta Valley, Saint-Christophe, Italy
| | - M Galvagno
- Climate Change Unit, Environmental Protection Agency of Aosta Valley, Saint-Christophe, Italy
| | - L Leolini
- University of Florence, DAGRI, 50144, Florence, Italy
| | - M Moriondo
- National Research Council - Institute of BioEconomy (IBE-CNR), 50145, Sesto Fiorentino, Italy; University of Florence, DAGRI, 50144, Florence, Italy
| | - A Piccot
- Institut Agricole Régional, 11100, Aosta, Italy
| | - L Stendardi
- University of Florence, DAGRI, 50144, Florence, Italy
| | - S Targetti
- University of Bologna, Department of Agricultural and Food Sciences, Viale Fanin, 50, 40127, Bologna, Italy
| | - G Bellocchi
- Université Clermont Auvergne, INRAE, VetAgro Sup, UREP, 63000, Clermont-Ferrand, France
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Albanito F, McBey D, Harrison M, Smith P, Ehrhardt F, Bhatia A, Bellocchi G, Brilli L, Carozzi M, Christie K, Doltra J, Dorich C, Doro L, Grace P, Grant B, Léonard J, Liebig M, Ludemann C, Martin R, Meier E, Meyer R, De Antoni Migliorati M, Myrgiotis V, Recous S, Sándor R, Snow V, Soussana JF, Smith WN, Fitton N. How Modelers Model: the Overlooked Social and Human Dimensions in Model Intercomparison Studies. Environ Sci Technol 2022; 56:13485-13498. [PMID: 36052879 PMCID: PMC9494747 DOI: 10.1021/acs.est.2c02023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 08/23/2022] [Accepted: 08/25/2022] [Indexed: 06/15/2023]
Abstract
There is a growing realization that the complexity of model ensemble studies depends not only on the models used but also on the experience and approach used by modelers to calibrate and validate results, which remain a source of uncertainty. Here, we applied a multi-criteria decision-making method to investigate the rationale applied by modelers in a model ensemble study where 12 process-based different biogeochemical model types were compared across five successive calibration stages. The modelers shared a common level of agreement about the importance of the variables used to initialize their models for calibration. However, we found inconsistency among modelers when judging the importance of input variables across different calibration stages. The level of subjective weighting attributed by modelers to calibration data decreased sequentially as the extent and number of variables provided increased. In this context, the perceived importance attributed to variables such as the fertilization rate, irrigation regime, soil texture, pH, and initial levels of soil organic carbon and nitrogen stocks was statistically different when classified according to model types. The importance attributed to input variables such as experimental duration, gross primary production, and net ecosystem exchange varied significantly according to the length of the modeler's experience. We argue that the gradual access to input data across the five calibration stages negatively influenced the consistency of the interpretations made by the modelers, with cognitive bias in "trial-and-error" calibration routines. Our study highlights that overlooking human and social attributes is critical in the outcomes of modeling and model intercomparison studies. While complexity of the processes captured in the model algorithms and parameterization is important, we contend that (1) the modeler's assumptions on the extent to which parameters should be altered and (2) modeler perceptions of the importance of model parameters are just as critical in obtaining a quality model calibration as numerical or analytical details.
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Affiliation(s)
- Fabrizio Albanito
- Institute
of Biological and Environmental Sciences, School of Biological Science, University of Aberdeen, 23 Street Machar Drive, Aberdeen AB24 3UU, U.K.
| | - David McBey
- Institute
of Biological and Environmental Sciences, School of Biological Science, University of Aberdeen, 23 Street Machar Drive, Aberdeen AB24 3UU, U.K.
| | - Matthew Harrison
- Tasmanian
Institute of Agriculture, University of
Tasmania, Newnham Drive, Launceston, Tasmania 7248, Australia
| | - Pete Smith
- Institute
of Biological and Environmental Sciences, School of Biological Science, University of Aberdeen, 23 Street Machar Drive, Aberdeen AB24 3UU, U.K.
| | - Fiona Ehrhardt
- INRAE,
CODIR, Paris 75007, France
- RITTMO
AgroEnvironnement, Colmar 68000, France
| | - Arti Bhatia
- ICAR-Indian
Agricultural Research Institute, New Delhi 110012, India
| | - Gianni Bellocchi
- Université
Clermont Auvergne, INRAE, VetAgro Sup, UREP, Clermont-Ferrand 63000, France
| | - Lorenzo Brilli
- CNR-IBE,
National Research Council Institute for the BioEconomy, Via Caproni 8, Florence 50145, Italy
| | - Marco Carozzi
- UMR
ECOSYS, INRAE, AgroParisTech, Université Paris-Saclay, Thiverval-Grignon 78850, France
| | - Karen Christie
- Tasmanian
Institute of Agriculture, University of
Tasmania, 16-20 Mooreville Road, Burnie, Tasmania 7320, Australia
| | - Jordi Doltra
- Sustainable
Field Crops Programme, Institute of Agrifood
Research and Technology (IRTA) Mas Badia, La Tallada d’Empordà, Girona 17134, Spain
| | - Christopher Dorich
- Natural
Resource Ecology Lab, Colorado
State University, Fort Collins, Colorado 80521, United States
| | - Luca Doro
- Texas A&M AgriLife Research, Blackland
Research and Extension Center, Temple, Texas 76502, United States
- Desertification Research Centre, University
of Sassari, Sassari 07100, Italy
| | - Peter Grace
- Queensland University of Technology, Brisbane, Queensland 4000, Australia
| | - Brian Grant
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario K1A 0C6, Canada
| | - Joël Léonard
- BioEcoAgro
Joint Research Unit, INRAE, Barenton-Bugny 02000, France
| | - Mark Liebig
- USDA-ARS Northern Great Plains Research
Laboratory, P.O. Box 459, Mandan, North Dakota 58554, United States
| | | | - Raphael Martin
- Université
Clermont Auvergne, INRAE, VetAgro Sup, UREP, Clermont-Ferrand 63000, France
| | - Elizabeth Meier
- CSIRO Agriculture
and Food, St
Lucia, Queensland 4067, Australia
| | - Rachelle Meyer
- Faculty of Veterinary & Agricultural
Sciences, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Massimiliano De Antoni Migliorati
- Queensland University of Technology, Brisbane, Queensland 4000, Australia
- Department of Environment and Science, Dutton Park, Queensland 4102, Australia
| | | | - Sylvie Recous
- Université
de Reims Champagne-Ardenne, INRAE, FARE Laboratory, Reims 51100, France
| | - Renáta Sándor
- Agricultural Institute, Centre for Agricultural Research,
ELKH, Martonvásár 2462, Hungary
| | - Val Snow
- AgResearch, P.O. Box 4749, Christchurch 8140, New
Zealand
| | | | - Ward N. Smith
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario K1A 0C6, Canada
| | - Nuala Fitton
- Institute
of Biological and Environmental Sciences, School of Biological Science, University of Aberdeen, 23 Street Machar Drive, Aberdeen AB24 3UU, U.K.
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Diodato N, Fiorillo F, Rinaldi M, Bellocchi G. Environmental drivers of dynamic soil erosion change in a Mediterranean fluvial landscape. PLoS One 2022; 17:e0262132. [PMID: 35061741 PMCID: PMC8782323 DOI: 10.1371/journal.pone.0262132] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Accepted: 12/19/2021] [Indexed: 11/18/2022] Open
Abstract
Background Rainfall and other climatic agents are the main triggers of soil erosion in the Mediterranean region, where they have the potential to increase discharge and sediment transport and cause long-term changes in the river system. For the Magra River Basin (MRB), located in the upper Tyrrhenian coast of Italy, we estimated changes in net erosion as a function of the geographical characteristics of the basin, the seasonal distribution of precipitation, and the vegetation cover. Methods and findings Based on rainfall erosivity and surface flow and transport sub-models, we developed a simplified model to assess basin-wide sediment yields on a monthly basis by upscaling the point rainfall input. Our calibration dataset of monthly data (Mg km-2 month-1, available for the years 1961 and 1963–1969) revealed that our model satisfactorily reproduces the net soil erosion in the study area (R2 = 0.81). For the period 1950–2020, the reconstruction of an annually aggregated time-series of monthly net erosion data (297 Mg km-2 yr-1 on average) indicated a moderate decline in sediment yield after 1999. This is part of a long-term downward trend, which highlights the role played by land-use changes and reforestation of the mountainous areas of the basin. Conclusion This study shows the environmental history and dynamics of the basin, and thus the varying sensitivity of hydrological processes and their perturbations. Relying on a few climatic variables as reported from a single representative basin location, it provides an interpretation of empirically determined factors that shape active erosional landscapes. In particular, we showed that the most recent extreme storms associated with sediment yield have been characterised by lower cumulative rainfall, indicating a greater propensity for the basin to produce sediment more discontinuously over time.
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Affiliation(s)
- Nazzareno Diodato
- Met European Research Observatory, International Affiliates Program of the University Corporation for Atmospheric Research, Benevento, Italy
| | - Francesco Fiorillo
- Department of Science and Technologies, University of Sannio, Benevento, Italy
- * E-mail:
| | - Massimo Rinaldi
- Department of Earth Sciences, University of Florence, Florence, Italy
| | - Gianni Bellocchi
- Met European Research Observatory, International Affiliates Program of the University Corporation for Atmospheric Research, Benevento, Italy
- Université Clermont Auvergne, VetAgro Sup, INRAE, Clermont-Ferrand, France
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5
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Farina R, Sándor R, Abdalla M, Álvaro-Fuentes J, Bechini L, Bolinder MA, Brilli L, Chenu C, Clivot H, De Antoni Migliorati M, Di Bene C, Dorich CD, Ehrhardt F, Ferchaud F, Fitton N, Francaviglia R, Franko U, Giltrap DL, Grant BB, Guenet B, Harrison MT, Kirschbaum MUF, Kuka K, Kulmala L, Liski J, McGrath MJ, Meier E, Menichetti L, Moyano F, Nendel C, Recous S, Reibold N, Shepherd A, Smith WN, Smith P, Soussana JF, Stella T, Taghizadeh-Toosi A, Tsutskikh E, Bellocchi G. Ensemble modelling, uncertainty and robust predictions of organic carbon in long-term bare-fallow soils. Glob Chang Biol 2021; 27:904-928. [PMID: 33159712 DOI: 10.1111/gcb.15441] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 10/26/2020] [Indexed: 06/11/2023]
Abstract
Simulation models represent soil organic carbon (SOC) dynamics in global carbon (C) cycle scenarios to support climate-change studies. It is imperative to increase confidence in long-term predictions of SOC dynamics by reducing the uncertainty in model estimates. We evaluated SOC simulated from an ensemble of 26 process-based C models by comparing simulations to experimental data from seven long-term bare-fallow (vegetation-free) plots at six sites: Denmark (two sites), France, Russia, Sweden and the United Kingdom. The decay of SOC in these plots has been monitored for decades since the last inputs of plant material, providing the opportunity to test decomposition without the continuous input of new organic material. The models were run independently over multi-year simulation periods (from 28 to 80 years) in a blind test with no calibration (Bln) and with the following three calibration scenarios, each providing different levels of information and/or allowing different levels of model fitting: (a) calibrating decomposition parameters separately at each experimental site (Spe); (b) using a generic, knowledge-based, parameterization applicable in the Central European region (Gen); and (c) using a combination of both (a) and (b) strategies (Mix). We addressed uncertainties from different modelling approaches with or without spin-up initialization of SOC. Changes in the multi-model median (MMM) of SOC were used as descriptors of the ensemble performance. On average across sites, Gen proved adequate in describing changes in SOC, with MMM equal to average SOC (and standard deviation) of 39.2 (±15.5) Mg C/ha compared to the observed mean of 36.0 (±19.7) Mg C/ha (last observed year), indicating sufficiently reliable SOC estimates. Moving to Mix (37.5 ± 16.7 Mg C/ha) and Spe (36.8 ± 19.8 Mg C/ha) provided only marginal gains in accuracy, but modellers would need to apply more knowledge and a greater calibration effort than in Gen, thereby limiting the wider applicability of models.
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Affiliation(s)
- Roberta Farina
- Research Centre for Agriculture and Environment, CREA - Council for Agricultural Research and Economics, Rome, Italy
| | - Renata Sándor
- Centre for Agricultural Research, Agricultural Institute, Martonvásár, Hungary
- Université Clermont Auvergne, INRAE, VetAgro Sup, UREP, Clermont-Ferrand, France
| | | | | | | | | | | | - Claire Chenu
- Université Paris Saclay, INRAE, AgroParisTech, Paris, France
| | - Hugues Clivot
- INRAE, BioEcoAgro, Barenton-Bugny, France
- Université de Lorraine, INRAE, LAE, Colmar, France
| | | | - Claudia Di Bene
- Research Centre for Agriculture and Environment, CREA - Council for Agricultural Research and Economics, Rome, Italy
| | | | | | | | | | - Rosa Francaviglia
- Research Centre for Agriculture and Environment, CREA - Council for Agricultural Research and Economics, Rome, Italy
| | - Uwe Franko
- Helmholtz Centre for Environmental Research, Halle, Germany
| | - Donna L Giltrap
- Manaaki Whenua - Landcare Research, Palmerston North, New Zealand
| | - Brian B Grant
- Ottawa Research and Development Centre, Agriculture and Agri-Food, Ottawa, ON, Canada
| | - Bertrand Guenet
- Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France
- Laboratoire de Géologie de l'ENS, PSL Research University, Paris, France
| | | | | | - Katrin Kuka
- JKI - Federal Research Centre for Cultivated Plants, Braunschweig, Germany
| | | | - Jari Liski
- Finnish Meteorological Institute, Helsinki, Finland
| | - Matthew J McGrath
- Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France
| | | | | | | | - Claas Nendel
- Leibniz Centre for Agricultural Landscape Research, Müncheberg, Germany
- University of Potsdam, Potsdam, Germany
| | - Sylvie Recous
- Université de Reims Champagne Ardenne, INRAE, FARE, Reims, France
| | | | - Anita Shepherd
- University of Aberdeen, Aberdeen, UK
- formerly Rothamsted Research, North Wyke, UK
| | - Ward N Smith
- Ottawa Research and Development Centre, Agriculture and Agri-Food, Ottawa, ON, Canada
| | | | | | - Tommaso Stella
- Leibniz Centre for Agricultural Landscape Research, Müncheberg, Germany
| | | | - Elena Tsutskikh
- Leibniz Centre for Agricultural Landscape Research, Müncheberg, Germany
| | - Gianni Bellocchi
- Université Clermont Auvergne, INRAE, VetAgro Sup, UREP, Clermont-Ferrand, France
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Acutis M, Trevisiol P, Confalonieri R, Bellocchi G, Grazioli E, Eede GVD, Paoletti C. Analytical Method Performance Evaluation (AMPE)A Software Tool for Analytical Method Validation. J AOAC Int 2019. [DOI: 10.1093/jaoac/90.5.1432] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
A Windows-based software tool [Analytical Method Performance Evaluation (AMPE)] was developed to support the validation of analytical methods. The software implements standard statistical approaches commonly adopted in validation studies to estimate analytical method performance (limits of detection and quantitation, accuracy, specificity, working range, and linearity of responses) according to ISO 5725. In addition, AMPE proposes the application of innovative and unique approaches for the assessment of analytical method performance. Specifically, AMPE proposes the use of difference-based indexes to quantify the agreement between measurements and reference values, the use of pattern indexes to quantify methods bias with respect to specific external variables, and the application of fuzzy logic to aggregate into synthetic indicators the information collected independently via the different performance statistics traditionally estimated in validation studies. Aggregated measures are particularly useful for methods comparison, when more than one method is available for a specific analysis and itmay be of interest to identify the best performing one taking into account, simultaneously, the information available from different performance statistics. Illustrative examples of the type of outputs expected from AMPE-based validation sessions are given. The extensive data handling capabilities and the wide range of statistics supplied in the software package makes AMPE suitable for specific needs that may arise in different validation studies. The installation package, complete with a fully documented help file, is distributed free of charge to interested users along with input files exemplary of the type of entry data required to run validation data analyses.
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Affiliation(s)
- Marco Acutis
- University of Milan, Department of Crop Science, via Celoria 2, 20133, Milan, Italy
| | - Patrizia Trevisiol
- University of Milan, Department of Crop Science, via Celoria 2, 20133, Milan, Italy
| | - Roberto Confalonieri
- European Commission Directorate General Joint Research Centre, Institute for the Protection and Security of the Citizen, Agriculture and Fisheries Unit, via E. Fermi 1-TP 268, 21020 Ispra (VA), Italy
| | - Gianni Bellocchi
- European Commission Directorate General Joint Research Centre, Institute for Health and Consumer Protection, Biotechnology and GMOs Unit, via E. Fermi 1-TP 331, 21020 Ispra (VA), Italy
| | - Emanuele Grazioli
- European Commission Directorate General Joint Research Centre, Institute for Health and Consumer Protection, Biotechnology and GMOs Unit, via E. Fermi 1-TP 331, 21020 Ispra (VA), Italy
| | - Guy Van Den Eede
- European Commission Directorate General Joint Research Centre, Institute for Health and Consumer Protection, Biotechnology and GMOs Unit, via E. Fermi 1-TP 331, 21020 Ispra (VA), Italy
| | - Claudia Paoletti
- European Commission Directorate General Joint Research Centre, Institute for Health and Consumer Protection, Biotechnology and GMOs Unit, via E. Fermi 1-TP 331, 21020 Ispra (VA), Italy
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7
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Vesely FM, Paleari L, Movedi E, Bellocchi G, Confalonieri R. Quantifying Uncertainty Due to Stochastic Weather Generators in Climate Change Impact Studies. Sci Rep 2019; 9:9258. [PMID: 31239485 PMCID: PMC6592885 DOI: 10.1038/s41598-019-45745-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2019] [Accepted: 06/10/2019] [Indexed: 11/29/2022] Open
Abstract
Climate change studies involve complex processes translating coarse climate change projections in locally meaningful terms. We analysed the behaviour of weather generators while downscaling precipitation and air temperature data. With multiple climate indices and alternative weather generators, we directly quantified the uncertainty associated with using weather generators when site specific downscaling is performed. We extracted the influence of weather generators on climate variability at local scale and the uncertainty that could affect impact assessment. For that, we first designed the downscaling experiments with three weather generators (CLIMAK, LARS-WG, WeaGETS) to interpret future projections. Then we assessed the impacts of estimated changes of precipitation and air temperature for a sample of 15 sites worldwide using a rice yield model and an extended set of climate metrics. We demonstrated that the choice of a weather generator in the downscaling process may have a higher impact on crop yield estimates than the climate scenario adopted. Should they be confirmed, these results would indicate that widely accepted outcomes of climate change studies using this downscaling technique need reconsideration.
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Affiliation(s)
- Fosco M Vesely
- University of Milan, ESP, Cassandra Lab, via Celoria 2, 20133, Milan, Italy.
| | - Livia Paleari
- University of Milan, ESP, Cassandra Lab, via Celoria 2, 20133, Milan, Italy
| | - Ermes Movedi
- University of Milan, ESP, Cassandra Lab, via Celoria 2, 20133, Milan, Italy
| | - Gianni Bellocchi
- UCA, INRA, VetAgro Sup, Unité Mixte deRecherche sur Écosystème Prairial (UREP), Site de Crouel 5, Chemin de Beaulieu, 63000, Clermont, Ferrand, France
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Movedi E, Bellocchi G, Argenti G, Paleari L, Vesely F, Staglianò N, Dibari C, Confalonieri R. Development of generic crop models for simulation of multi-species plant communities in mown grasslands. Ecol Modell 2019. [DOI: 10.1016/j.ecolmodel.2019.03.001] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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9
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De Swaef T, Bellocchi G, Aper J, Lootens P, Roldán-Ruiz I. Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J Exp Bot 2019; 70:2587-2604. [PMID: 30753587 DOI: 10.1093/jxb/erz049] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Accepted: 01/31/2019] [Indexed: 06/09/2023]
Abstract
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phenotyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Affiliation(s)
- Tom De Swaef
- Plant Sciences Unit, Institute for Agricultural Fisheries and Food Research (ILVO), Melle, Belgium
| | - Gianni Bellocchi
- UCA, INRA, VetAgro Sup, Unité Mixte de Recherche sur Écosystème Prairial (UREP), Clermont-Ferrand, France
| | - Jonas Aper
- Plant Sciences Unit, Institute for Agricultural Fisheries and Food Research (ILVO), Melle, Belgium
| | - Peter Lootens
- Plant Sciences Unit, Institute for Agricultural Fisheries and Food Research (ILVO), Melle, Belgium
| | - Isabel Roldán-Ruiz
- Plant Sciences Unit, Institute for Agricultural Fisheries and Food Research (ILVO), Melle, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
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10
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Sándor R, Ehrhardt F, Brilli L, Carozzi M, Recous S, Smith P, Snow V, Soussana JF, Dorich CD, Fuchs K, Fitton N, Gongadze K, Klumpp K, Liebig M, Martin R, Merbold L, Newton PCD, Rees RM, Rolinski S, Bellocchi G. The use of biogeochemical models to evaluate mitigation of greenhouse gas emissions from managed grasslands. Sci Total Environ 2018; 642:292-306. [PMID: 29902627 DOI: 10.1016/j.scitotenv.2018.06.020] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2018] [Revised: 05/15/2018] [Accepted: 06/02/2018] [Indexed: 06/08/2023]
Abstract
Simulation models quantify the impacts on carbon (C) and nitrogen (N) cycling in grassland systems caused by changes in management practices. To support agricultural policies, it is however important to contrast the responses of alternative models, which can differ greatly in their treatment of key processes and in their response to management. We applied eight biogeochemical models at five grassland sites (in France, New Zealand, Switzerland, United Kingdom and United States) to compare the sensitivity of modelled C and N fluxes to changes in the density of grazing animals (from 100% to 50% of the original livestock densities), also in combination with decreasing N fertilization levels (reduced to zero from the initial levels). Simulated multi-model median values indicated that input reduction would lead to an increase in the C sink strength (negative net ecosystem C exchange) in intensive grazing systems: -64 ± 74 g C m-2 yr-1 (animal density reduction) and -81 ± 74 g C m-2 yr-1 (N and animal density reduction), against the baseline of -30.5 ± 69.5 g C m-2 yr-1 (LSU [livestock units] ≥ 0.76 ha-1 yr-1). Simulations also indicated a strong effect of N fertilizer reduction on N fluxes, e.g. N2O-N emissions decreased from 0.34 ± 0.22 (baseline) to 0.1 ± 0.05 g N m-2 yr-1 (no N fertilization). Simulated decline in grazing intensity had only limited impact on the N balance. The simulated pattern of enteric methane emissions was dominated by high model-to-model variability. The reduction in simulated offtake (animal intake + cut biomass) led to a doubling in net primary production per animal (increased by 11.6 ± 8.1 t C LSU-1 yr-1 across sites). The highest N2O-N intensities (N2O-N/offtake) were simulated at mown and extensively grazed arid sites. We show the possibility of using grassland models to determine sound mitigation practices while quantifying the uncertainties associated with the simulated outputs.
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Affiliation(s)
- Renáta Sándor
- INRA, VetAgro Sup, UCA, Unité Mixte de Recherche sur l'Écosystème Prairial (UREP), 63000 Clermont-Ferrand, France; Agricultural Institute, CAR HAS, 2462 Martonvásár, Hungary
| | | | - Lorenzo Brilli
- University of Florence, DISPAA, 50144 Florence, Italy; IBIMET-CNR, 50145 Florence, Italy
| | - Marco Carozzi
- Agroscope Research Station, Climate Agriculture Group, Zurich, Switzerland
| | - Sylvie Recous
- FARE Laboratory, INRA, Université de Reims Champagne-Ardenne, 51100 Reims, France
| | - Pete Smith
- Institute of Biological & Environmental Sciences, School of Biological Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom
| | - Val Snow
- AgResearch - Lincoln Research Centre, Private Bag 4749, Christchurch 8140, New Zealand
| | | | | | - Kathrin Fuchs
- Department of Environmental Systems Science, Institute of Agricultural Sciences, ETH Zürich, 8092 Zurich, Switzerland
| | - Nuala Fitton
- Institute of Biological & Environmental Sciences, School of Biological Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom
| | - Kate Gongadze
- Rothamsted Research, Sustainable Soil and Grassland Systems Department, United Kingdom
| | - Katja Klumpp
- INRA, VetAgro Sup, UCA, Unité Mixte de Recherche sur l'Écosystème Prairial (UREP), 63000 Clermont-Ferrand, France
| | | | - Raphaël Martin
- INRA, VetAgro Sup, UCA, Unité Mixte de Recherche sur l'Écosystème Prairial (UREP), 63000 Clermont-Ferrand, France
| | - Lutz Merbold
- Department of Environmental Systems Science, Institute of Agricultural Sciences, ETH Zürich, 8092 Zurich, Switzerland; Mazingira Centre, International Livestock Research Institute, 00100 Nairobi, Kenya
| | - Paul C D Newton
- AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North 4442, New Zealand
| | - Robert M Rees
- Scotland's Rural College, EH9 3JG Edinburgh, United Kingdom
| | - Susanne Rolinski
- Potsdam Institute for Climate Impact Research, 14473 Potsdam, Germany
| | - Gianni Bellocchi
- INRA, VetAgro Sup, UCA, Unité Mixte de Recherche sur l'Écosystème Prairial (UREP), 63000 Clermont-Ferrand, France.
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11
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Hamidov A, Helming K, Bellocchi G, Bojar W, Dalgaard T, Ghaley BB, Hoffmann C, Holman I, Holzkämper A, Krzeminska D, Kværnø SH, Lehtonen H, Niedrist G, Øygarden L, Reidsma P, Roggero PP, Rusu T, Santos C, Seddaiu G, Skarbøvik E, Ventrella D, Żarski J, Schönhart M. Impacts of climate change adaptation options on soil functions: A review of European case-studies. Land Degrad Dev 2018; 29:2378-2389. [PMID: 30393451 PMCID: PMC6199005 DOI: 10.1002/ldr.3006] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2017] [Revised: 04/27/2018] [Accepted: 05/01/2018] [Indexed: 05/03/2023]
Abstract
Soils are vital for supporting food security and other ecosystem services. Climate change can affect soil functions both directly and indirectly. Direct effects include temperature, precipitation, and moisture regime changes. Indirect effects include those that are induced by adaptations such as irrigation, crop rotation changes, and tillage practices. Although extensive knowledge is available on the direct effects, an understanding of the indirect effects of agricultural adaptation options is less complete. A review of 20 agricultural adaptation case-studies across Europe was conducted to assess implications to soil threats and soil functions and the link to the Sustainable Development Goals (SDGs). The major findings are as follows: (a) adaptation options reflect local conditions; (b) reduced soil erosion threats and increased soil organic carbon are expected, although compaction may increase in some areas; (c) most adaptation options are anticipated to improve the soil functions of food and biomass production, soil organic carbon storage, and storing, filtering, transforming, and recycling capacities, whereas possible implications for soil biodiversity are largely unknown; and (d) the linkage between soil functions and the SDGs implies improvements to SDG 2 (achieving food security and promoting sustainable agriculture) and SDG 13 (taking action on climate change), whereas the relationship to SDG 15 (using terrestrial ecosystems sustainably) is largely unknown. The conclusion is drawn that agricultural adaptation options, even when focused on increasing yields, have the potential to outweigh the negative direct effects of climate change on soil degradation in many European regions.
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Affiliation(s)
- Ahmad Hamidov
- Leibniz Centre for Agricultural Landscape Research (ZALF)Eberswalder Straße 8415374MünchebergGermany
- Tashkent Institute of Irrigation and Agricultural Mechanization Engineers (TIIAME)39 Kary‐Niyaziy StreetTashkent100000Uzbekistan
| | - Katharina Helming
- Leibniz Centre for Agricultural Landscape Research (ZALF)Eberswalder Straße 8415374MünchebergGermany
- Faculty of Landscape Management and Nature ConservationUniversity for Sustainable Development (HNEE)Schickler Straße 516225EberswaldeGermany
| | - Gianni Bellocchi
- INRA, VetAgro Sup, UCA, Unité Mixte de Recherche sur Écosystème Prairial (UREP)63000Clermont‐FerrandFrance
| | - Waldemar Bojar
- Faculty of ManagementUniversity of Science and TechnologyFordońska 430 St.85‐790BydgoszczPoland
| | - Tommy Dalgaard
- Department of AgroecologyAarhus UniversityBlichers Allé 20DK‐8830TjeleDenmark
| | - Bhim Bahadur Ghaley
- Department of Plant and Environmental Sciences, Faculty of ScienceUniversity of CopenhagenHøjbakkegård Allé 30DK‐2630TaastrupDenmark
| | - Christian Hoffmann
- Institute for Regional DevelopmentEuropean Academy of BolzanoViale Druso 139100BolzanoItaly
| | - Ian Holman
- Cranfield Water Science InstituteCranfield UniversityCranfieldBedfordMK43 0ALUK
| | - Annelie Holzkämper
- Agroscope, Climate and Agriculture GroupReckenholzstrasse 1918046ZurichSwitzerland
| | | | - Sigrun H. Kværnø
- Norwegian Institute of Bioeconomy Research, NIBIOPostbox 1151431ÅsNorway
| | - Heikki Lehtonen
- Natural Resources Institute Finland (Luke)Latokartanonkaari 9FI‐00790HelsinkiFinland
| | - Georg Niedrist
- Institute for Alpine EnvironmentEuropean Academy of BolzanoViale Druso 139100BolzanoItaly
| | - Lillian Øygarden
- Norwegian Institute of Bioeconomy Research, NIBIOPostbox 1151431ÅsNorway
| | - Pytrik Reidsma
- Plant Production Systems groupWageningen University and ResearchP.O. Box 4306700 AKWageningenThe Netherlands
| | - Pier Paolo Roggero
- Department of Agricultural SciencesUniversity of Sassariviale Italia 3907100SassariItaly
- Desertification Research CentreUniversity of Sassariviale Italia 3907100SassariItaly
| | - Teodor Rusu
- University of Agricultural Sciences and Veterinary Medicine Cluj‐NapocaManastur Street 3‐5400372Cluj‐NapocaRomania
| | - Cristina Santos
- IFAPA‐Centro Alameda del Obispo, Junta de AndalucíaP.O. Box 309214080CórdobaSpain
| | - Giovanna Seddaiu
- Department of Agricultural SciencesUniversity of Sassariviale Italia 3907100SassariItaly
- Desertification Research CentreUniversity of Sassariviale Italia 3907100SassariItaly
| | - Eva Skarbøvik
- Norwegian Institute of Bioeconomy Research, NIBIOPostbox 1151431ÅsNorway
| | - Domenico Ventrella
- Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA), Centro di ricerca Agricoltura e Ambiente (CREA‐AA)Via Celso Ulpiani 570125BariItaly
| | - Jacek Żarski
- Faculty of Agriculture and BiotechnologyUniversity of Science and TechnologyBernardyńska St. 685029BydgoszczPoland
| | - Martin Schönhart
- Department of Economics and Social SciencesUniversity of Natural Resources and Life Sciences (BOKU)Feistmantelstraße 41180ViennaAustria
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12
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Ehrhardt F, Soussana JF, Bellocchi G, Grace P, McAuliffe R, Recous S, Sándor R, Smith P, Snow V, de Antoni Migliorati M, Basso B, Bhatia A, Brilli L, Doltra J, Dorich CD, Doro L, Fitton N, Giacomini SJ, Grant B, Harrison MT, Jones SK, Kirschbaum MUF, Klumpp K, Laville P, Léonard J, Liebig M, Lieffering M, Martin R, Massad RS, Meier E, Merbold L, Moore AD, Myrgiotis V, Newton P, Pattey E, Rolinski S, Sharp J, Smith WN, Wu L, Zhang Q. Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N 2 O emissions. Glob Chang Biol 2018; 24:e603-e616. [PMID: 29080301 DOI: 10.1111/gcb.13965] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Revised: 10/01/2017] [Accepted: 10/10/2017] [Indexed: 06/07/2023]
Abstract
Simulation models are extensively used to predict agricultural productivity and greenhouse gas emissions. However, the uncertainties of (reduced) model ensemble simulations have not been assessed systematically for variables affecting food security and climate change mitigation, within multi-species agricultural contexts. We report an international model comparison and benchmarking exercise, showing the potential of multi-model ensembles to predict productivity and nitrous oxide (N2 O) emissions for wheat, maize, rice and temperate grasslands. Using a multi-stage modelling protocol, from blind simulations (stage 1) to partial (stages 2-4) and full calibration (stage 5), 24 process-based biogeochemical models were assessed individually or as an ensemble against long-term experimental data from four temperate grassland and five arable crop rotation sites spanning four continents. Comparisons were performed by reference to the experimental uncertainties of observed yields and N2 O emissions. Results showed that across sites and crop/grassland types, 23%-40% of the uncalibrated individual models were within two standard deviations (SD) of observed yields, while 42 (rice) to 96% (grasslands) of the models were within 1 SD of observed N2 O emissions. At stage 1, ensembles formed by the three lowest prediction model errors predicted both yields and N2 O emissions within experimental uncertainties for 44% and 33% of the crop and grassland growth cycles, respectively. Partial model calibration (stages 2-4) markedly reduced prediction errors of the full model ensemble E-median for crop grain yields (from 36% at stage 1 down to 4% on average) and grassland productivity (from 44% to 27%) and to a lesser and more variable extent for N2 O emissions. Yield-scaled N2 O emissions (N2 O emissions divided by crop yields) were ranked accurately by three-model ensembles across crop species and field sites. The potential of using process-based model ensembles to predict jointly productivity and N2 O emissions at field scale is discussed.
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Affiliation(s)
| | | | | | - Peter Grace
- Queensland University of Technology, Brisbane, Qld, Australia
| | | | | | - Renáta Sándor
- UMR Ecosystème Prairial, INRA, Clermont-Ferrand, France
- HAS, CAR, Agricultural Institute, Martonvásár, Hungary
| | - Pete Smith
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, UK
| | - Val Snow
- Lincoln Research Centre, AgResearch, Lincoln, New Zealand
| | | | - Bruno Basso
- Department of Geological Sciences, Michigan State University, East Lansing, MI, USA
| | - Arti Bhatia
- Indian Agricultural Research Institute, New Delhi, India
| | | | - Jordi Doltra
- Cantabrian Agricultural Research and Training Center (CIFA), Muriedas, Spain
| | | | - Luca Doro
- Desertification Research Centre, University of Sassari, Sassari, Italy
| | - Nuala Fitton
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, UK
| | - Sandro J Giacomini
- Soil Department, Federal University of Santa Maria (UFSM), Santa Maria, Brazil
| | - Brian Grant
- Ottawa Research and Development Center, Agriculture and Agri-Food Canada, Ottawa, ON, Canada
| | | | | | | | - Katja Klumpp
- UMR Ecosystème Prairial, INRA, Clermont-Ferrand, France
| | - Patricia Laville
- INRA, UMR ECOSYS, Université Paris-Saclay, Thiverval-Grignon, France
| | | | - Mark Liebig
- USDA Agricultural Research Service, Mandan, ND, USA
| | - Mark Lieffering
- AgResearch, Grasslands Research Centre, Palmerton North, New Zealand
| | | | - Raia S Massad
- INRA, UMR ECOSYS, Université Paris-Saclay, Thiverval-Grignon, France
| | | | - Lutz Merbold
- ETH Zurich, Institute of Agricultural Sciences, Zurich, Switzerland
- International Livestock Research Institute (ILRI), Mazingira Centre, Nairobi, Kenya
| | - Andrew D Moore
- Agriculture & Food, Black Mountain Science and Innovation Precinct, CSIRO, Canberra, ACT, Australia
| | | | - Paul Newton
- AgResearch, Grasslands Research Centre, Palmerton North, New Zealand
| | - Elizabeth Pattey
- Ottawa Research and Development Center, Agriculture and Agri-Food Canada, Ottawa, ON, Canada
| | - Susanne Rolinski
- Potsdam Institute for Climate Impact Research (PIK), Potsdam, Germany
| | - Joanna Sharp
- New Zealand Institute for Plant and Food Research, Christchurch, New Zealand
| | - Ward N Smith
- Ottawa Research and Development Center, Agriculture and Agri-Food Canada, Ottawa, ON, Canada
| | - Lianhai Wu
- Sustainable Soils and Grassland Systems, Rothamsted Research, Devon, UK
| | - Qing Zhang
- LAPC, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, China
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13
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Gilardelli C, Confalonieri R, Cappelli GA, Bellocchi G. Sensitivity of WOFOST-based modelling solutions to crop parameters under climate change. Ecol Modell 2018. [DOI: 10.1016/j.ecolmodel.2017.11.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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14
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Cianfrone F, Mammarella F, Ralli M, Evetovic V, Pianura CM, Bellocchi G. Universal newborn hearing screening using A-TEOAE and A-ABR: The experience of a large public hospital. J Neonatal Perinatal Med 2018; 11:87-92. [PMID: 29689750 DOI: 10.3233/npm-181744] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
BACKGROUND Universal newborn hearing screening (UNHS) aims to identify hearing loss in the early postnatal period; prompt detection of bilateral or unilateral hearing loss is mandatory for timely intervention. METHODS This retrospective study reports the results of the first two years of a UNHS program on 4,719 newborns in a large public Italian hospital. Screening was divided into two levels: automated transient otoacoustic emissions were used for first level; automated auditory brainstem response for second level. Second level included children with a "refer" response at first level and babies with a family history for hearing loss or other risk factors. Hearing loss diagnosis was made using clinical auditory brainstem response. RESULTS During first level, 254 (5.4% ) newborns were "refer". At retest, 130 (51.1% ) babies were PASS and 48 (18.8% ) were "refer". 76 babies dropped out (29.9% ). 146 babies (3.1% ) were referred to the second level: 48 for a "refer" response at first level and 98 for a PASS response but potential hearing loss due to risk factors. 24 babies dropped out (16.4% ). Out of 122 newborns tested in the second level, 105 (86.1% ) had a PASS response and 17 (13.9% ) were "refer". Our screening protocol identified 7 (0.14% ) babies with profound hearing loss; 5 had unilateral and 2 had bilateral hearing loss. 2 babies dropped out at diagnostic level (11.8% ). CONCLUSIONS A correct and early diagnosis of hearing loss is mandatory to prevent permanent consequences; the spread of hearing screening programs is the optimal solution to reach this goal.
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Affiliation(s)
- F Cianfrone
- Department of Otolaryngology, San Camillo Forlanini Hospital, Rome, Italy
| | - F Mammarella
- Department of Otolaryngology, San Camillo Forlanini Hospital, Rome, Italy
| | - M Ralli
- Department of Oral and Maxillofacial Sciences, Sapienza University of Rome, Italy
| | - V Evetovic
- Department of Otolaryngology, San Camillo Forlanini Hospital, Rome, Italy
| | - C M Pianura
- Department of Otolaryngology, San Camillo Forlanini Hospital, Rome, Italy
| | - G Bellocchi
- Department of Otolaryngology, San Camillo Forlanini Hospital, Rome, Italy
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15
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Brilli L, Bechini L, Bindi M, Carozzi M, Cavalli D, Conant R, Dorich CD, Doro L, Ehrhardt F, Farina R, Ferrise R, Fitton N, Francaviglia R, Grace P, Iocola I, Klumpp K, Léonard J, Martin R, Massad RS, Recous S, Seddaiu G, Sharp J, Smith P, Smith WN, Soussana JF, Bellocchi G. Review and analysis of strengths and weaknesses of agro-ecosystem models for simulating C and N fluxes. Sci Total Environ 2017; 598:445-470. [PMID: 28454025 DOI: 10.1016/j.scitotenv.2017.03.208] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2016] [Revised: 03/21/2017] [Accepted: 03/22/2017] [Indexed: 05/21/2023]
Abstract
Biogeochemical simulation models are important tools for describing and quantifying the contribution of agricultural systems to C sequestration and GHG source/sink status. The abundance of simulation tools developed over recent decades, however, creates a difficulty because predictions from different models show large variability. Discrepancies between the conclusions of different modelling studies are often ascribed to differences in the physical and biogeochemical processes incorporated in equations of C and N cycles and their interactions. Here we review the literature to determine the state-of-the-art in modelling agricultural (crop and grassland) systems. In order to carry out this study, we selected the range of biogeochemical models used by the CN-MIP consortium of FACCE-JPI (http://www.faccejpi.com): APSIM, CERES-EGC, DayCent, DNDC, DSSAT, EPIC, PaSim, RothC and STICS. In our analysis, these models were assessed for the quality and comprehensiveness of underlying processes related to pedo-climatic conditions and management practices, but also with respect to time and space of application, and for their accuracy in multiple contexts. Overall, it emerged that there is a possible impact of ill-defined pedo-climatic conditions in the unsatisfactory performance of the models (46.2%), followed by limitations in the algorithms simulating the effects of management practices (33.1%). The multiplicity of scales in both time and space is a fundamental feature, which explains the remaining weaknesses (i.e. 20.7%). Innovative aspects have been identified for future development of C and N models. They include the explicit representation of soil microbial biomass to drive soil organic matter turnover, the effect of N shortage on SOM decomposition, the improvements related to the production and consumption of gases and an adequate simulations of gas transport in soil. On these bases, the assessment of trends and gaps in the modelling approaches currently employed to represent biogeochemical cycles in crop and grassland systems appears an essential step for future research.
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Affiliation(s)
- Lorenzo Brilli
- Università degli Studi di Firenze, Department of Agri-Food Production and Environmental Sciences, 50144 Florence, Italy; IBIMET-CNR, Via Caproni 8, 50145 Firenze, Italy.
| | - Luca Bechini
- Università degli Studi di Milano, Department of Agricultural and Environmental Sciences, Milan, Italy
| | - Marco Bindi
- Università degli Studi di Firenze, Department of Agri-Food Production and Environmental Sciences, 50144 Florence, Italy
| | - Marco Carozzi
- INRA, AgroParisTech, UMR1402 EcoSys, 78850 Thiverval-Grignon, France
| | - Daniele Cavalli
- Università degli Studi di Milano, Department of Agricultural and Environmental Sciences, Milan, Italy
| | - Richard Conant
- NREL, Colorado State University, Fort Collins, CO 80523, USA
| | | | - Luca Doro
- Desertification Research Centre, Department of Agricultural Sciences, University of Sassari, 07100 Sassari, Italy; Texas A&M AgriLife Research, Blackland Research & Extension Center, Temple, (TX), USA
| | | | - Roberta Farina
- CREA-RPS, Research Centre for the Soil-Plant System, Via della Navicella 2-4, 00184 Roma, Italy
| | - Roberto Ferrise
- Università degli Studi di Firenze, Department of Agri-Food Production and Environmental Sciences, 50144 Florence, Italy
| | - Nuala Fitton
- Institute of Biological and Environmental Sciences, University of Aberdeen, St Machar Drive, AB24 3UU Aberdeen, UK
| | - Rosa Francaviglia
- CREA-RPS, Research Centre for the Soil-Plant System, Via della Navicella 2-4, 00184 Roma, Italy
| | - Peter Grace
- Queensland University of Technology, Brisbane, Australia
| | - Ileana Iocola
- Desertification Research Centre, Department of Agricultural Sciences, University of Sassari, 07100 Sassari, Italy
| | | | - Joël Léonard
- INRA, UR 1158 AgroImpact, site de Laon, F-02000 Barenton-Bugny, France
| | | | | | | | - Giovanna Seddaiu
- Desertification Research Centre, Department of Agricultural Sciences, University of Sassari, 07100 Sassari, Italy
| | - Joanna Sharp
- New Zealand Institute for Plant and Food Research, 7608 Lincoln, New Zealand
| | - Pete Smith
- Institute of Biological and Environmental Sciences, University of Aberdeen, St Machar Drive, AB24 3UU Aberdeen, UK
| | - Ward N Smith
- Agriculture and Agri-Food Canada, Ottawa, Ontario K1A 0C6, Canada
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16
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Diodato N, Higgins S, Bellocchi G, Fiorillo F, Romano N, Guadagno FM. Hydro-climatic forcing of dissolved organic carbon in two boreal lakes of Canada. Sci Total Environ 2016; 571:50-58. [PMID: 27459253 DOI: 10.1016/j.scitotenv.2016.07.112] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2016] [Revised: 05/03/2016] [Accepted: 07/15/2016] [Indexed: 06/06/2023]
Abstract
The boreal forest of the northern hemisphere represents one of the world's largest ecozones and contains nearly one third of the world's intact forests and terrestrially stored carbon. Long-term variations in temperature and precipitation have been implied in altering carbon cycling in forest soils, including increased fluxes to receiving waters. In this study, we use a simple hydrologic model and a 40-year dataset (1971-2010) of dissolved organic carbon (DOC) from two pristine boreal lakes (ELA, Canada) to examine the interactions between precipitation and landscape-scale controls of DOC production and export from forest catchments to surface waters. Our results indicate that a simplified hydrologically-based conceptual model can enable the long-term temporal patterns of DOC fluxes to be captured within boreal landscapes. Reconstructed DOC exports from forested catchments in the period 1901-2012 follow largely a sinusoidal pattern, with a period of about 37years and are tightly linked to multi-decadal patterns of precipitation. By combining our model with long-term precipitation estimates, we found no evidence of increasing DOC transport or in-lake concentrations through the 20th century.
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Affiliation(s)
- Nazzareno Diodato
- Met European Research Observatory, 82100 Benevento, Italy; Department of Science and Technology, University of Sannio, via Port'Arsa 11, 82100 Benevento, Italy
| | - Scott Higgins
- IISD - Experimental Lakes Area Inc., 111 Lombard Ave., Winnipeg R3B 0T4, MB, Canada
| | - Gianni Bellocchi
- Met European Research Observatory, 82100 Benevento, Italy; UREP, INRA, 63000 Clermont-Ferrand, France.
| | - Francesco Fiorillo
- Department of Science and Technology, University of Sannio, via Port'Arsa 11, 82100 Benevento, Italy
| | - Nunzio Romano
- Department of Agricultural Sciences, AFBE Division, University of Napoli Federico II - Via Università 100, Portici, (Naples), Italy
| | - Francesco M Guadagno
- Department of Science and Theconology, University of Sannio, 82100 Benevento, Italy
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17
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Kipling RP, Virkajärvi P, Breitsameter L, Curnel Y, De Swaef T, Gustavsson AM, Hennart S, Höglind M, Järvenranta K, Minet J, Nendel C, Persson T, Picon-Cochard C, Rolinski S, Sandars DL, Scollan ND, Sebek L, Seddaiu G, Topp CFE, Twardy S, Van Middelkoop J, Wu L, Bellocchi G. Key challenges and priorities for modelling European grasslands under climate change. Sci Total Environ 2016; 566-567:851-864. [PMID: 27259038 DOI: 10.1016/j.scitotenv.2016.05.144] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Revised: 04/28/2016] [Accepted: 05/19/2016] [Indexed: 05/28/2023]
Abstract
Grassland-based ruminant production systems are integral to sustainable food production in Europe, converting plant materials indigestible to humans into nutritious food, while providing a range of environmental and cultural benefits. Climate change poses significant challenges for such systems, their productivity and the wider benefits they supply. In this context, grassland models have an important role in predicting and understanding the impacts of climate change on grassland systems, and assessing the efficacy of potential adaptation and mitigation strategies. In order to identify the key challenges for European grassland modelling under climate change, modellers and researchers from across Europe were consulted via workshop and questionnaire. Participants identified fifteen challenges and considered the current state of modelling and priorities for future research in relation to each. A review of literature was undertaken to corroborate and enrich the information provided during the horizon scanning activities. Challenges were in four categories relating to: 1) the direct and indirect effects of climate change on the sward 2) climate change effects on grassland systems outputs 3) mediation of climate change impacts by site, system and management and 4) cross-cutting methodological issues. While research priorities differed between challenges, an underlying theme was the need for accessible, shared inventories of models, approaches and data, as a resource for stakeholders and to stimulate new research. Developing grassland models to effectively support efforts to tackle climate change impacts, while increasing productivity and enhancing ecosystem services, will require engagement with stakeholders and policy-makers, as well as modellers and experimental researchers across many disciplines. The challenges and priorities identified are intended to be a resource 1) for grassland modellers and experimental researchers, to stimulate the development of new research directions and collaborative opportunities, and 2) for policy-makers involved in shaping the research agenda for European grassland modelling under climate change.
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Affiliation(s)
- Richard P Kipling
- IBERS, Aberystwyth University, 1st Floor, Stapledon Building, Plas Gogerddan, Aberystwyth Ceredigion, SY23 3EE, UK.
| | - Perttu Virkajärvi
- Green Technology, Natural Resources Institute Finland (Luke), Halolantie 31 A, 71750 Maaninka, Finland.
| | - Laura Breitsameter
- Leibniz Universität Hannover, Institut für Gartenbauliche Produktionssysteme, Systemmodellierung Gemüsebau, Herrenhäuser Straße 2, 30419 Hannover, Germany.
| | - Yannick Curnel
- Farming Systems, Territories and Information Technologies Unit, Walloon Agricultural Research Centre (CRA-W), 9 rue de Liroux, B-5030 Gembloux, Belgium.
| | - Tom De Swaef
- ILVO, Plant Sciences Unit, Caritasstraat 39, 9090 Melle, Belgium.
| | - Anne-Maj Gustavsson
- Swedish University of Agricultural Sciences (SLU), Department of Agricultural Research for Northern, Umeå, SE 901 83, Sweden.
| | - Sylvain Hennart
- Farming Systems, Territories and Information Technologies Unit, Walloon Agricultural Research Centre (CRA-W), 9 rue de Liroux, B-5030 Gembloux, Belgium
| | - Mats Höglind
- Norwegian Institute of Bioeconomy Research (NIBIO), Po. Box 115, NO -1431 Ås, Norway
| | - Kirsi Järvenranta
- Green Technology, Natural Resources Institute Finland (Luke), Halolantie 31 A, 71750 Maaninka, Finland
| | - Julien Minet
- Arlon Campus Environnement, University of Liège, Avenue de Longwy 185, 6700 Arlon, Belgium.
| | - Claas Nendel
- Institute of Landscape Systems Analysis, Leibniz Centre for Agricultural Landscape Research (ZALF), Eberswalder Straße 84, 15374, Müncheberg, Germany.
| | - Tomas Persson
- Norwegian Institute of Bioeconomy Research (NIBIO), Po. Box 115, NO -1431 Ås, Norway.
| | | | - Susanne Rolinski
- Potsdam Institute for Climate Impact Research, Telegraphenberg A31, 14473 Potsdam, Germany.
| | - Daniel L Sandars
- Cranfield University, School of Energy, Environment, and Agri-food, College Road, Cranfield, Bedfordshire MK43 0AL, UK
| | - Nigel D Scollan
- IBERS, Aberystwyth University, 1st Floor, Stapledon Building, Plas Gogerddan, Aberystwyth Ceredigion, SY23 3EE, UK
| | - Leon Sebek
- Wageningen UR Livestock Research, P.O. Box 338, 6700 AH Wageningen, The Netherlands
| | - Giovanna Seddaiu
- NRD, Desertification Research Centre; Dept. of Agriculture, University of Sassari, Viale Italia 39, 07100 Sassari, Italy.
| | | | - Stanislaw Twardy
- Institute of Technology and Life Sciences at Falenty, Malopolska Research Centre in Krakow, 31-450 Krakow, ul. Ulanow 21B, Poland.
| | | | - Lianhai Wu
- Rothamsted Research, North Wyke, Okehampton EX20 2SB, UK.
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Ben Touhami H, Bellocchi G. Bayesian calibration of the Pasture Simulation model (PaSim) to simulate European grasslands under water stress. ECOL INFORM 2015. [DOI: 10.1016/j.ecoinf.2015.09.009] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Luque-Perez E, Mazzara M, Weber TP, Foti N, Grazioli E, Munaro B, Pinski G, Bellocchi G, Van den Eede G, Savini C. Testing the Robustness of Validated Methods for Quantitative Detection of GMOs Across qPCR Instruments. FOOD ANAL METHOD 2013. [DOI: 10.1007/s12161-012-9445-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Diodato N, Esposito L, Bellocchi G, Vernacchia L, Fiorillo F, Guadagno FM. Assessment of the Spatial Uncertainty of Nitrates in the Aquifers of the Campania Plain (Italy). ACTA ACUST UNITED AC 2013. [DOI: 10.4236/ajcc.2013.22013] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Bellocchi G, De Giacomo M, Foti N, Mazzara M, Palmaccio E, Savini C, Di Domenicantonio C, Onori R, Van den Eede G. Testing the interaction between analytical modules: an example with Roundup Ready soybean line GTS 40-3-2. BMC Biotechnol 2010; 10:55. [PMID: 20687918 PMCID: PMC2927498 DOI: 10.1186/1472-6750-10-55] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2009] [Accepted: 08/05/2010] [Indexed: 12/05/2022] Open
Abstract
BACKGROUND The modular approach to analysis of genetically modified organisms (GMOs) relies on the independence of the modules combined (i.e. DNA extraction and GM quantification). The validity of this assumption has to be proved on the basis of specific performance criteria. RESULTS An experiment was conducted using, as a reference, the validated quantitative real-time polymerase chain reaction (PCR) module for detection of glyphosate-tolerant Roundup Ready(R) GM soybean (RRS). Different DNA extraction modules (CTAB, Wizard and Dellaporta), were used to extract DNA from different food/feed matrices (feed, biscuit and certified reference material [CRM 1%]) containing the target of the real-time PCR module used for validation. Purity and structural integrity (absence of inhibition) were used as basic criteria that a DNA extraction module must satisfy in order to provide suitable template DNA for quantitative real-time (RT) PCR-based GMO analysis. When performance criteria were applied (removal of non-compliant DNA extracts), the independence of GMO quantification from the extraction method and matrix was statistically proved, except in the case of Wizard applied to biscuit. A fuzzy logic-based procedure also confirmed the relatively poor performance of the Wizard/biscuit combination. CONCLUSIONS For RRS, this study recognises that modularity can be generally accepted, with the limitation of avoiding combining highly processed material (i.e. biscuit) with a magnetic-beads system (i.e. Wizard).
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Affiliation(s)
- Gianni Bellocchi
- European Commission, Joint Research Centre, Institute for Health and Consumer Protection, Molecular Biology and Genomics Unit, via E. Fermi 2749, 21027 Ispra (VA), Italy
| | - Marzia De Giacomo
- Italian National Institute of Health, Department of Veterinary Public Health and Food Safety, GMO and Mycotoxins Unit, viale Regina Elena 299, 00161 Rome, Italy
| | - Nicoletta Foti
- European Commission, Joint Research Centre, Institute for Health and Consumer Protection, Molecular Biology and Genomics Unit, via E. Fermi 2749, 21027 Ispra (VA), Italy
| | - Marco Mazzara
- European Commission, Joint Research Centre, Institute for Health and Consumer Protection, Molecular Biology and Genomics Unit, via E. Fermi 2749, 21027 Ispra (VA), Italy
| | - Eleonora Palmaccio
- Italian National Institute of Health, Department of Veterinary Public Health and Food Safety, GMO and Mycotoxins Unit, viale Regina Elena 299, 00161 Rome, Italy
| | - Cristian Savini
- European Commission, Joint Research Centre, Institute for Health and Consumer Protection, Molecular Biology and Genomics Unit, via E. Fermi 2749, 21027 Ispra (VA), Italy
| | - Chiara Di Domenicantonio
- Italian National Institute of Health, Department of Veterinary Public Health and Food Safety, GMO and Mycotoxins Unit, viale Regina Elena 299, 00161 Rome, Italy
| | - Roberta Onori
- Italian National Institute of Health, Department of Veterinary Public Health and Food Safety, GMO and Mycotoxins Unit, viale Regina Elena 299, 00161 Rome, Italy
| | - Guy Van den Eede
- European Commission, Joint Research Centre, Institute for Health and Consumer Protection, Molecular Biology and Genomics Unit, via E. Fermi 2749, 21027 Ispra (VA), Italy
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Confalonieri R, Bellocchi G, Bregaglio S, Donatelli M, Acutis M. Comparison of sensitivity analysis techniques: A case study with the rice model WARM. Ecol Modell 2010. [DOI: 10.1016/j.ecolmodel.2010.04.021] [Citation(s) in RCA: 146] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Folloni S, Bellocchi G, Kagkli DM, Pastor-Benito S, Aguilera M, Mazzeo A, Querci M, Van den Eede G, Ermolli M. Development of an ELISA Reverse-Based Assay to Assess the Presence of Mycotoxins in Cereal Flour. FOOD ANAL METHOD 2010. [DOI: 10.1007/s12161-010-9150-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Lievens A, Bellocchi G, De Bernardi D, Moens W, Savini C, Mazzara M, Van den Eede G, Van den Bulcke M. Use of pJANUS-02-001 as a calibrator plasmid for Roundup Ready soybean event GTS-40-3-2 detection: an interlaboratory trial assessment. Anal Bioanal Chem 2010; 396:2165-73. [PMID: 20016879 PMCID: PMC2836459 DOI: 10.1007/s00216-009-3346-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2009] [Revised: 11/20/2009] [Accepted: 11/24/2009] [Indexed: 11/10/2022]
Abstract
Owing to the labelling requirements of food and feed products containing materials derived from genetically modified organisms, quantitative detection methods have to be developed for this purpose, including the necessary certified reference materials and calibrator standards. To date, for most genetically modified organisms authorized in the European Union, certified reference materials derived from seed powders are being developed. Here, an assessment has been made on the feasibility of using plasmid DNA as an alternative calibrator for the quantitative detection of genetically modified organisms. For this, a dual-target plasmid, designated as pJANUS-02-001, comprising part of a junction region of genetically modified soybean event GTS-40-3-2 and the endogenous soybean-specific lectin gene was constructed. The dynamic range, efficiency and limit of detection for the soybean event GTS-40-3-2 real-time quantitative polymerase chain reaction (Q-PCR) system described by Terry et al. (J AOAC Int 85(4):938-944, 2002) were shown to be similar for in house produced homozygous genomic DNA from leaf tissue of soybean event GTS-40-3-2 and for plasmid pJANUS-02-001 DNA backgrounds. The performance of this real-time Q-PCR system using both types of DNA templates as calibrator standards in quantitative DNA analysis was further assessed in an interlaboratory trial. Statistical analysis and fuzzy-logic-based interpretation were performed on critical method parameters (as defined by the European Network of GMO Laboratories and the Community Reference Laboratory for GM Food and Feed guidelines) and demonstrated that the plasmid pJANUS-02-001 DNA represents a valuable alternative to genomic DNA as a calibrator for the quantification of soybean event GTS-40-3-2 in food and feed products.
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Affiliation(s)
- A. Lievens
- Division of Biosafety and Biotechnology, Scientific Institute of Public Health, J. Wytsmanstreet 14, 1050 Brussels, Belgium
| | - G. Bellocchi
- Molecular Biology and Genomics Unit, Institute for Health and Consumer Protection, European Commission Joint Research Centre, Via E. Fermi 2749, 21027 Ispra (VA), Italy
| | - D. De Bernardi
- Division of Biosafety and Biotechnology, Scientific Institute of Public Health, J. Wytsmanstreet 14, 1050 Brussels, Belgium
| | - W. Moens
- Division of Biosafety and Biotechnology, Scientific Institute of Public Health, J. Wytsmanstreet 14, 1050 Brussels, Belgium
| | - C. Savini
- Molecular Biology and Genomics Unit, Institute for Health and Consumer Protection, European Commission Joint Research Centre, Via E. Fermi 2749, 21027 Ispra (VA), Italy
| | - M. Mazzara
- Molecular Biology and Genomics Unit, Institute for Health and Consumer Protection, European Commission Joint Research Centre, Via E. Fermi 2749, 21027 Ispra (VA), Italy
| | - G. Van den Eede
- Molecular Biology and Genomics Unit, Institute for Health and Consumer Protection, European Commission Joint Research Centre, Via E. Fermi 2749, 21027 Ispra (VA), Italy
| | - M. Van den Bulcke
- Division of Biosafety and Biotechnology, Scientific Institute of Public Health, J. Wytsmanstreet 14, 1050 Brussels, Belgium
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Donatelli M, Bellocchi G, Habyarimana E, Bregaglio S, Baruth B. AirTemperature: Extensible Software Library to Generate Air Temperature Data. ACTA ACUST UNITED AC 2010. [DOI: 10.3814/2010/812789] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Bellocchi G, Bertholet V, Hamels S, Moens W, Remacle J, Van den Eede G. Fuzzy-logic based strategy for validation of multiplex methods: example with qualitative GMO assays. Transgenic Res 2009; 19:57-65. [PMID: 19533405 DOI: 10.1007/s11248-009-9293-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2008] [Accepted: 05/30/2009] [Indexed: 11/28/2022]
Abstract
This paper illustrates the advantages that a fuzzy-based aggregation method could bring into the validation of a multiplex method for GMO detection (DualChip GMO kit, Eppendorf). Guidelines for validation of chemical, bio-chemical, pharmaceutical and genetic methods have been developed and ad hoc validation statistics are available and routinely used, for in-house and inter-laboratory testing, and decision-making. Fuzzy logic allows summarising the information obtained by independent validation statistics into one synthetic indicator of overall method performance. The microarray technology, introduced for simultaneous identification of multiple GMOs, poses specific validation issues (patterns of performance for a variety of GMOs at different concentrations). A fuzzy-based indicator for overall evaluation is illustrated in this paper, and applied to validation data for different genetically modified elements. Remarks were drawn on the analytical results. The fuzzy-logic based rules were shown to be applicable to improve interpretation of results and facilitate overall evaluation of the multiplex method.
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Affiliation(s)
- Gianni Bellocchi
- European Commission Joint Research Centre, Institute for Health and Consumer Protection, Molecular Biology and Genomics, 21027 Ispra, VA, Italy.
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Diodato N, Bellocchi G. Modelling vegetation greenness responses to climate variability in a Mediterranean terrestrial ecosystem. Environ Monit Assess 2008; 143:147-159. [PMID: 17985205 DOI: 10.1007/s10661-007-9964-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2007] [Accepted: 08/27/2007] [Indexed: 05/25/2023]
Abstract
This work presents a modelling study where monthly-based climate data are used to estimate the Normalized Difference Vegetation Index (NDVI). The latter is a measure of vegetation greenness, usually derived from satellite-driven information. A model was developed to link NDVI data to rainfall and temperature measures. The test area was a 3 x 3 km grid centred to the top of Monte Pino hill (Southern Italy), for which multi-year (from 1996 to 2004) climate and satellite-derived NDVI data were available. The simulated NDVI data compared well with the remote-sensed measurements (e.g. modelling efficiency approximately 0.80), thus showing a strong linking between vegetation greenness and climate patterns in spite of the many disturbances exerted from farming. The model was used to reconstruct an extended series of monthly NDVI values for a period antecedent 1996 (1972-1995). The analysis of long-term anomalies indicated a positive trend of NDVI over time, consistent with the air temperature increase registered in the same period.
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Affiliation(s)
- Nazzareno Diodato
- Monte Pino Met Research Observatory, TEMS Network-Terrestrial Ecosystem Monitoring Sites (FAO-United Nations), via Contrada Monte Pino, 82100 Benevento, Italy.
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Aguilera M, Querci M, Pastor S, Bellocchi G, Milcamps A, Van den Eede G. Assessing Copy Number of MON 810 Integrations in Commercial Seed Maize Varieties by 5′ Event-Specific Real-Time PCR Validated Method Coupled to $$2^{ - \Delta \Delta CT} $$ Analysis. FOOD ANAL METHOD 2008. [DOI: 10.1007/s12161-008-9036-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Leimanis S, Hamels S, Nazé F, Mbongolo Mbella G, Sneyers M, Hochegger R, Broll H, Roth L, Dallmann K, Micsinai A, La Paz JL, Pla M, Brünen-Nieweler C, Papazova N, Taverniers I, Hess N, Kirschneit B, Bertheau Y, Audeon C, Laval V, Busch U, Pecoraro S, Neumann K, Rösel S, van Dijk J, Kok E, Bellocchi G, Foti N, Mazzara M, Moens W, Remacle J, Van Den Eede G. Validation of the performance of a GMO multiplex screening assay based on microarray detection. Eur Food Res Technol 2008. [DOI: 10.1007/s00217-008-0886-y] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Bellocchi G, Acutis M, Paoletti C, Confalonieri R, Trevisiol P, Grazioli E, Delobel C, Savini C, Mazzara M, Van den Eede G. Expanding Horizons in the Validation of GMO Analytical Methods: Fuzzy-based Expert Systems. FOOD ANAL METHOD 2008. [DOI: 10.1007/s12161-008-9021-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Acutis M, Trevisiol P, Confalonieri R, Bellocchi G, Grazioli E, Van den Eede G, Paoletti C. Analytical Method Performance Evaluation (AMPE)--a software tool for analytical method validation. J AOAC Int 2007; 90:1432-1438. [PMID: 17955990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
A Windows-based software tool [Analytical Method Performance Evaluation (AMPE)] was developed to support the validation of analytical methods. The software implements standard statistical approaches commonly adopted in validation studies to estimate analytical method performance (limits of detection and quantitation, accuracy, specificity, working range, and linearity of responses) according to ISO 5725. In addition, AMPE proposes the application of innovative and unique approaches for the assessment of analytical method performance. Specifically, AMPE proposes the use of difference-based indexes to quantify the agreement between measurements and reference values, the use of pattern indexes to quantify methods bias with respect to specific external variables, and the application of fuzzy logic to aggregate into synthetic indicators the information collected independently via the different performance statistics traditionally estimated in validation studies. Aggregated measures are particularly useful for methods comparison, when more than one method is available for a specific analysis and it may be of interest to identify the best performing one taking into account, simultaneously, the information available from different performance statistics. Illustrative examples of the type of outputs expected from AMPE-based validation sessions are given. The extensive data handling capabilities and the wide range of statistics supplied in the software package makes AMPE suitable for specific needs that may arise in different validation studies. The installation package, complete with a fully documented help file, is distributed free of charge to interested users along with input files exemplary of the type of entry data required to run validation data analyses.
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Affiliation(s)
- Marco Acutis
- University of Milan, Department of Crop Science, via Celoria 2, 20133, Milan, Italy
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Felici N, Montemari G, Cannata C, Bellocchi G. Total Tongue Reconstruction with Free Rectus Abdominis Myocutaneous Flaps: Functional Results. J Reconstr Microsurg 2006. [DOI: 10.1055/s-2006-948989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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