Ecological degradation of a fragile semi-arid wetland and the implications in its microbial community: The case study of Las Tablas de Daimiel National Park (Spain)

Las Tablas de Daimiel National Park (TDNP, Iberian Peninsula) is a semi-arid wetland of international significance for waterfowl and serves as a migratory route for various bird species. However, TDNP presents strong anthropization and fluctuating water levels, making it a highly fragile ecosystem. Water physico-chemical parameters and microbial diversity of the three domains (Bacteria-Archaea- Eukarya) were analysed in Zone A and Zone B of the wetland (a total of eight stations) during spring and summer, aiming to determine how seasonal changes influence the water quality, trophic status and ultimately, the microbial community composition. Additionally, Photosynthetically Active Radiation (PAR) was used to determine the trophic status instead of transparency using Secchi disk, setting the threshold to 20-40 μmol/sm2 for benthic vegetation growth. In spring, both zones of the wetland were considered eutrophic, and physico-chemical parameters as well as microbial diversity were similar to other wetlands, with most abundant bacteria affiliated to Actinobacteriota, Cyanobacteria, Bacteroidota, Gammaproteobacteria and Verrumicrobiota. Methane-related taxa like Methanosarcinales and photosynthetic Chlorophyta were respectively the most representative archaeal and eukaryotic groups. In summer, phytoplankton bloom led by an unclassified Cyanobacteria and mainly alga Hydrodictyon was observed in Zone A, resulting in an increase of turbidity, pH, phosphorus, nitrogen, chlorophyll-a and phycocyanin indicating the change to hypertrophic state. Microbial community composition was geographical and seasonal shaped within the wetland as response to changes in trophic status. Archaeal diversity decreases and methane-related species increase due to sediment disturbance driven by fish activity, wind, and substantial water depth reduction. Zone B in summer suffers less seasonal changes, maintaining the eutrophic state and still detecting macrophyte growth in some stations. This study provides a new understanding of the interdomain microbial adaptation following the ecological evolution of the wetland, which is crucial to knowing these systems that are ecological niches with high environmental value.

Unmasking the physiology of mercury detoxifying bacteria from polluted sediments

Marine sediments polluted from anthropogenic activities can be major reservoirs of toxic mercury species. Some microorganisms in these environments have the capacity to detoxify these pollutants, by using the mer operon. In this study, we characterized microbial cultures isolated from polluted marine sediments growing under diverse environmental conditions of salinity, oxygen availability and mercury tolerance. Specific growth rates and percentage of mercury removal were measured in batch cultures for a selection of isolates. A culture affiliated with Pseudomonas putida (MERCC_1942), which contained a mer operon as well as other genes related to metal resistances, was selected as the best candidate for mercury elimination. In order to optimize mercury detoxification conditions for strain MERCC_1942 in continuous culture, three different dilution rates were tested in bioreactors until the cultures achieved steady state, and they were subsequently exposed to a mercury spike; after 24 h, strain MERCC_1942 removed up to 76% of the total mercury. Moreover, when adapted to high growth rates in bioreactors, this strain exhibited the highest specific mercury detoxification rates. Finally, an immobilization protocol using the sol-gel technology was optimized. These results highlight that some sediment bacteria show capacity to detoxify mercury and could be used for bioremediation applications.

Revisiting the mercury cycle in marine sediments: A potential multifaceted role for Desulfobacterota

Marine sediments impacted by urban and industrial pollutants are typically exposed to reducing conditions and represent major reservoirs of toxic mercury species. Mercury methylation mediated by anaerobic microorganisms is favored under such conditions, yet little is known about potential microbial mechanisms for mercury detoxification. We used culture-independent (metagenomics, metabarcoding) and culture-dependent approaches in anoxic marine sediments to identify microbial indicators of mercury pollution and analyze the distribution of genes involved in mercury reduction (merA) and demethylation (merB). While none of the isolates featured merB genes, 52 isolates, predominantly affiliated with Gammaproteobacteria, were merA positive. In contrast, merA genes detected in metagenomes were assigned to different phyla, including Desulfobacterota, Actinomycetota, Gemmatimonadota, Nitrospirota, and Pseudomonadota. This indicates a widespread capacity for mercury reduction in anoxic sediment microbiomes. Notably, merA genes were predominately identified in Desulfobacterota, a phylum previously associated only with mercury methylation. Marker genes involved in the latter process (hgcAB) were also mainly assigned to Desulfobacterota, implying a potential central and multifaceted role of this phylum in the mercury cycle. Network analysis revealed that Desulfobacterota were associated with anaerobic fermenters, methanogens and sulfur-oxidizers, indicating potential interactions between key players of the carbon, sulfur and mercury cycling in anoxic marine sediments.

The mobility of thorium, uranium and rare earth elements from Mid Ordovician black shales to acid waters and its removal by goethite and schwertmannite

Previous studies have addressed the occurrence of Acid Rock Drainage (ARD) affecting La Silva stream due to the generation of large dumps of Middle Ordovician black shales during the construction of a highway close to El Bierzo (León, Spain). This ARD was characterized by sulphated acid waters with high concentration of heavy metals and anomalies in dissolved thorium (Th) and uranium (U). In the present study, we analyse in depth black shales and water, streambed sediments and precipitates of La Silva stream and its tributaries using different petrographic, mineralogical and geochemical approaches. Black shales, with average Th and U contents of 20 and 3 μg/g respectively contain disseminated detritic micro-grains of high weathering-resistant minerals, such as monazite and xenotime, that present smaller amounts of yttrium and rare earth elements (REY) and other elements as Ca, U, Th, Si and F. Results of the affected waters by ARD show an enrichment in dissolved Th, U and REY of several orders of magnitude with respect to natural waters. Sampled precipitates were mainly schwertmannite (Fe₈O₈(OH)_8-2x (SO₄)_xO₁₆•nH₂O) and goethite (α-Fe³⁺O(OH)) that showed an enrichment of Th (up to 798 μg/g) and REY, due to the presence of dissolved anionic species (e.g. [Formula: see text] , [Formula: see text] ) that enables their adsorption. Furthermore, these black shales show a clear enrichment in REE (Rare Earth Elements) with respect to NASC (North American Shales Composite) normalized REE patterns. Likewise, normalized REE patterns of stream waters and precipitates clearly show convex curvatures in middle-REE (MREE) with respect to light- and something less than heavy-REE, indicating the trend towards MREE enrichment. These findings are essential to evaluate the impact of ARD of Mid Ordovician shales in the surrounding environment, and to start considering these site as potential source of REE and critical raw materials, activating a Circular Economy.

Seabed mining and blue growth: exploring the potential of marine mineral deposits as a sustainable source of rare earth elements (MaREEs) (IUPAC Technical Report)

The expected growth of the global economy and the projected rise in world population call for a greatly increased supply of materials critical for implementing clean technologies, such as rare earth elements (REEs) and other rare metals. Because the demand for critical metals is increasing and land-based mineral deposits are being depleted, seafloor resources are seen as the next frontier for mineral exploration and extraction. Marine mineral deposits with a great resource potential for transition, rare, and critical metals include mainly deep-sea mineral deposits, such as polymetallic sulfides, polymetallic nodules, cobalt-rich crusts, phosphorites, and rare earth element-rich muds. Major areas with economic interest for seabed mineral exploration and mining are the following: nodules in the Penrhyn Basin-Cook Islands Exclusive Economic Zone (EEZ), the Clarion–Clipperton nodule Zone, Peru Basin nodules, and the Central Indian Ocean Basin; seafloor massive sulfide deposits in the exclusive economic zones of Papua New Guinea, Japan, and New Zealand as well as the Mid-Atlantic Ridge and the three Indian Ocean spreading ridges; cobalt-rich crusts in the Pacific Prime Crust Zone and the Canary Islands Seamounts and the Rio Grande Rise in the Atlantic Ocean; and the rare earth element-rich deep-sea muds around Minamitorishima Island in the equatorial North Pacific. In addition, zones for marine phosphorites exploration are located in Chatham Rise, offshore Baja California, and on the shelf off Namibia. Moreover, shallow-water resources, like placer deposits, represent another marine source for many critical minerals, metals, and gems. The main concerns of deep-sea mining are related to its environmental impacts. Ecological impacts of rare earth element mining on deep-sea ecosystems are still poorly evaluated. Furthermore, marine mining may cause conflicts with various stakeholders such as fisheries, communications cable owners, offshore wind farms, and tourism. The global ocean is an immense source of food, energy, raw materials, clean water, and ecosystem services and suffers seriously by multiple stressors from anthropogenic sources. The development of a blue economy strategy needs a better knowledge of the environmental impacts. By protecting vulnerable areas, applying new technologies for deep-sea mineral exploration and mining, marine spatial planning, and a regulatory framework for minerals extraction, we may achieve sustainable management and use of our oceans.

Siboglinidae Tubes as an Additional Niche for Microbial Communities in the Gulf of Cádiz-A Microscopical Appraisal

Siboglinids were sampled from four mud volcanoes in the Gulf of Cádiz (El Cid MV, Bonjardim MV, Al Gacel MV, and Anastasya MV). These invertebrates are characteristic to cold seeps and are known to host chemosynthetic endosymbionts in a dedicated trophosome organ. However, little is known about their tube as a potential niche for other microorganisms. Analyses by scanning and transmission electron microscopy showed dense biofilms on the tube in Al Gacel MV and Anastasya MV specimens by prokaryotic cells. Methanotrophic bacteria were the most abundant forming these biofilms as further supported by 16S rRNA sequence analysis. Furthermore, elemental analyses with electron microscopy and energy-dispersive X-ray spectroscopy point to the mineralization and silicification of the tube, most likely induced by the microbial metabolisms. Bacterial and archaeal 16S rRNA sequence libraries revealed abundant microorganisms related to these siboglinid specimens and certain variations in microbial communities among samples. Thus, the tube remarkably increases the microbial biomass related to the worms and provides an additional microbial niche in deep-sea ecosystems.