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Soares CM, Diniz JSS, Lima EM, Oliveira GR, Canhestro MR, Colosimo EA, e Silva ACS, Oliveira EA. Predictive factors of progression to chronic kidney disease stage 5 in a predialysis interdisciplinary programme. Nephrol Dial Transplant 2008;24:848-55. [DOI: 10.1093/ndt/gfn547] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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Soares CM, De Castro HF, De Moraes FF, Zanin GM. Characterization and utilization of Candida rugosa lipase immobilized on controlled pore silica. Appl Biochem Biotechnol 2005;77-79:745-57. [PMID: 15304694 DOI: 10.1385/abab:79:1-3:745] [Citation(s) in RCA: 157] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Soares CM, De Castro HF, Santana MH, Zanin GM. Selection of stabilizing additive for lipase immobilization on controlled pore silica by factorial design. Appl Biochem Biotechnol 2002;91-93:703-18. [PMID: 11963898 DOI: 10.1385/abab:91-93:1-9:703] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Louro RO, Bento I, Matias PM, Catarino T, Baptista AM, Soares CM, Carrondo MA, Turner DL, Xavier AV. Conformational component in the coupled transfer of multiple electrons and protons in a monomeric tetraheme cytochrome. J Biol Chem 2001;276:44044-51. [PMID: 11551953 DOI: 10.1074/jbc.m107136200] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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Abreu IA, Saraiva LM, Soares CM, Teixeira M, Cabelli DE. The mechanism of superoxide scavenging by Archaeoglobus fulgidus neelaredoxin. J Biol Chem 2001;276:38995-9001. [PMID: 11489883 DOI: 10.1074/jbc.m103232200] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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Izacc SM, Gomez FJ, Jesuino RS, Fonseca CA, Felipe MS, Deepe GS, Soares CM. Molecular cloning, characterization and expression of the heat shock protein 60 gene from the human pathogenic fungus Paracoccidioides brasiliensis. Med Mycol 2001;39:445-55. [PMID: 12054056 DOI: 10.1080/mmy.39.5.445.455] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]  Open
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Silva WP, Soares RB, Jesuino RS, Izacc SM, Felipe MS, Soares CM. Expression of alpha tubulin during the dimorphic transition of Paracoccidioides brasiliensis. Med Mycol 2001;39:457-62. [PMID: 12054057 DOI: 10.1080/mmy.39.5.457.462] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]  Open
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Mendes J, Nagarajaram HA, Soares CM, Blundell TL, Carrondo MA. Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure. Biopolymers 2001;59:72-86. [PMID: 11373721 DOI: 10.1002/1097-0282(200108)59:2<72::aid-bip1007>3.0.co;2-s] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Mendes J, Baptista AM, Carrondo MA, Soares CM. Implicit solvation in the self-consistent mean field theory method: sidechain modelling and prediction of folding free energies of protein mutants. J Comput Aided Mol Des 2001;15:721-40. [PMID: 11718477 DOI: 10.1023/a:1012279810260] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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McEwen JG, Taylor JW, Carter D, Xu J, Felipe MS, Vilgalys R, Mitchell TG, Kasuga T, White T, Bui T, Soares CM. Molecular typing of pathogenic fungi. Med Mycol 2001;38 Suppl 1:189-97. [PMID: 11204145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]  Open
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da Fonseca CA, Jesuino RS, Felipe MS, Cunha DA, Brito WA, Soares CM. Two-dimensional electrophoresis and characterization of antigens from Paracoccidioides brasiliensis. Microbes Infect 2001;3:535-42. [PMID: 11418327 DOI: 10.1016/s1286-4579(01)01409-5] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Cardoso DD, Rácz ML, Azevedo MS, Martins RM, Soares CM. Genotyping of group A rotavirus samples from Brazilian children by probe hybridization. Braz J Med Biol Res 2001;34:471-3. [PMID: 11285457 DOI: 10.1590/s0100-879x2001000400005] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
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Santana M, Pereira MM, Elias NP, Soares CM, Teixeira M. Gene cluster of Rhodothermus marinus high-potential iron-sulfur Protein: oxygen oxidoreductase, a caa(3)-type oxidase belonging to the superfamily of heme-copper oxidases. J Bacteriol 2001;183:687-99. [PMID: 11133964 PMCID: PMC94926 DOI: 10.1128/jb.183.2.687-699.2001] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2000] [Accepted: 10/15/2000] [Indexed: 11/20/2022]  Open
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Matias PM, Soares CM, Saraiva LM, Coelho R, Morais J, Le Gall J, Carrondo MA. [NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 A and modelling studies of its interaction with the tetrahaem cytochrome c3. J Biol Inorg Chem 2001;6:63-81. [PMID: 11191224 DOI: 10.1007/s007750000167] [Citation(s) in RCA: 182] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
15
Sadeghi SJ, Valetti F, Cunha CA, Romão MJ, Soares CM, Gilardi G. Ionic strength dependence of the non-physiological electron transfer between flavodoxin and cytochrome c553 from D vulgaris. J Biol Inorg Chem 2000;5:730-7. [PMID: 11129000 DOI: 10.1007/s007750000162] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Power DM, Elias NP, Richardson SJ, Mendes J, Soares CM, Santos CR. Evolution of the thyroid hormone-binding protein, transthyretin. Gen Comp Endocrinol 2000;119:241-55. [PMID: 11017772 DOI: 10.1006/gcen.2000.7520] [Citation(s) in RCA: 152] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Matias PM, Soares CM, Saraiva LM, Coelho R, Morais J, Le Gall J, Carrondo MA. [NiFe] Hydrogenase fromDesulfovibrio desulfuricansATCC 27774: Gene sequencing, three-dimensional structure determination and refinement at1.8 Å and modelling studies of its interaction with the tetra-haem cytochromec3. Acta Crystallogr A 2000. [DOI: 10.1107/s0108767300026003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
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Motoyama AB, Venancio EJ, Brandão GO, Petrofeza-Silva S, Pereira IS, Soares CM, Felipe MS. Molecular identification of Paracoccidioides brasiliensis by PCR amplification of ribosomal DNA. J Clin Microbiol 2000;38:3106-9. [PMID: 10921990 PMCID: PMC87201 DOI: 10.1128/jcm.38.8.3106-3109.2000] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2000] [Accepted: 06/01/2000] [Indexed: 11/20/2022]  Open
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Cardoso das D, Soares CM, Azevedo MS, Leite JP, Munford V, Rácz ML. Serotypes and subgroups of rotavirus isolated from children in central Brazil. JOURNAL OF HEALTH, POPULATION, AND NUTRITION 2000;18:39-43. [PMID: 11014769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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Pereira M, Felipe MS, Brígido MM, Soares CM, Azevedo MO. Molecular cloning and characterization of a glucan synthase gene from the human pathogenic fungus Paracoccidioides brasiliensis. Yeast 2000;16:451-62. [PMID: 10705373 DOI: 10.1002/(sici)1097-0061(20000330)16:5<451::aid-yea540>3.0.co;2-o] [Citation(s) in RCA: 47] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
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Mendes J, Baptista AM, Carrondo MA, Soares CM. Improved modeling of side-chains in proteins with rotamer-based methods: a flexible rotamer model. Proteins 1999;37:530-43. [PMID: 10651269 DOI: 10.1002/(sici)1097-0134(19991201)37:4<530::aid-prot4>3.0.co;2-h] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Burke DF, Deane CM, Nagarajaram HA, Campillo N, Martin-Martinez M, Mendes J, Molina F, Perry J, Reddy BV, Soares CM, Steward RE, Williams M, Carrondo MA, Blundell TL, Mizuguchi K. An iterative structure-assisted approach to sequence alignment and comparative modeling. Proteins 1999;Suppl 3:55-60. [PMID: 10526352 DOI: 10.1002/(sici)1097-0134(1999)37:3+<55::aid-prot8>3.3.co;2-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
23
Petukhov M, Cregut D, Soares CM, Serrano L. Local water bridges and protein conformational stability. Protein Sci 1999;8:1982-9. [PMID: 10548043 PMCID: PMC2144129 DOI: 10.1110/ps.8.10.1982] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Frazão C, Bento I, Costa J, Soares CM, Veríssimo P, Faro C, Pires E, Cooper J, Carrondo MA. Crystal structure of cardosin A, a glycosylated and Arg-Gly-Asp-containing aspartic proteinase from the flowers of Cynara cardunculus L. J Biol Chem 1999;274:27694-701. [PMID: 10488111 DOI: 10.1074/jbc.274.39.27694] [Citation(s) in RCA: 74] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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Pereira MM, Santana M, Soares CM, Mendes J, Carita JN, Fernandes AS, Saraste M, Carrondo MA, Teixeira M. The caa3 terminal oxidase of the thermohalophilic bacterium Rhodothermus marinus: a HiPIP:oxygen oxidoreductase lacking the key glutamate of the D-channel. BIOCHIMICA ET BIOPHYSICA ACTA 1999;1413:1-13. [PMID: 10524259 DOI: 10.1016/s0005-2728(99)00073-0] [Citation(s) in RCA: 47] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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