Collating biodiversity occurrence data for conservation

Plant and animal checklists, with conservation status information, are fundamental for conservation management. Historical field data, more recent data of digital origin and data-sharing platforms provide useful sources for collating species locality data. However, different biodiversity datasets have different formats and inconsistent naming systems. Additionally, most digital data sources do not provide an easy option for download by protected area. Further, data-entry-ready software is not readily available for conservation organization staff with limited technical skills to collate these heterogeneous data and create distribution maps and checklists for protected areas. The insights presented here are the outcome of conceptualizing a biodiversity information system for South African National Parks. We recognize that a fundamental requirement for achieving better standardization, sharing and use of biodiversity data for conservation is capacity building, internet connectivity, national institutional data management support and collaboration. We focus on some of the issues that need to be considered for capacity building, data standardization and data support. We outline the need for using taxonomic backbones and standardizing biodiversity data and the utility of data from the Global Biodiversity Information Facility and other available sources in this process. Additionally, we make recommendations for the fields needed in relational databases for collating species data that can be used to inform conservation decisions and outline steps that can be taken to enable easier collation of biodiversity data, using South Africa as a case study.

Assessing the association between pathways of alien plant invaders and their impacts in protected areas

Protected areas face mounting pressures, including invasion by alien plant species. Scientifically sound information is required to advise invasive species management strategies, where early detection and rapid response is particularly important. One approach to this is to determine: (i) the relative importance of pathways of invasion by which a species is introduced, (ii) the range of likely impacts associated with each species, and (iii) the relationship between pathways and impacts, to assess the relative threats posed by different pathways of alien species introductions. This assessment was performed on 139 alien plants that are invasive across the South African National Parks (19 national parks, covering ~39,000 km2), and based on available literature and expert opinion, known to have negative ecological impacts. For each species the likelihood of being introduced by each of eight pathways, and of having negative impacts in each of 13 identified impact categories, was assessed. The similarity of impact and pathway types between species was assessed using the Jaccard index and cladograms. Differences in the prevalence of impacts and pathways and relationships between these were assessed using a Chi-squared contingency and Generalised Linear Model. Nearly 80% of the species are ornamental plants and about 60% are also dispersed by rivers, highlighting the importance of managing ornamental species and surveillance along rivers in preventing future invasions. As to the impacts, ~95% of the species compete directly with native species and 70% change the physical structure of the environment. The majority of species exert multiple impacts, with 70% of species assessed having five or more impacts. There was a significant positive relationship between the number of pathways via which a species can be introduced into an area and the number of potential impacts they can have. This suggests that species using multiple pathways reach a wider range of suitable habitats, increasing the potential for different kinds of impacts over a wider area.

Chemerin-ChemR23 signaling in tooth development

Our long-term goal is to identify and characterize molecular mechanisms regulating tooth development, including those mediating the critical dental epithelial-dental mesenchymal (DE-DM) cell interactions required for normal tooth development. The goal of this study was to investigate Chemerin (Rarres2)/ChemR23(Cmklr1) signaling in DE-DM cell interactions in normal tooth development. Here we present, for the first time, tissue-specific expression patterns of Chemerin and ChemR23 in mouse tooth development. We show that Chemerin is expressed in cultured DE progenitor cells, while ChemR23 is expressed in cultured DM cells. Moreover, we demonstrate that ribosomal protein S6 (rS6) and Akt, downstream targets of Chemerin/ChemR23 signaling, are phosphorylated in response to Chemerin/ChemR23 signaling in vitro and are expressed in mouse tooth development. Together, these results suggest roles for Chemerin/ChemR23-mediated DE-DM cell signaling during tooth morphogenesis.

Uncertainty in invasive alien species listing

Lists of invasive alien species (IAS) are essential for preventing, controlling, and reporting on the state of biological invasions. However, these lists suffer from a range of errors, with serious consequences for their use in science, policy, and management. Here we (1) collated and classified errors in IAS listing using a taxonomy of uncertainty; and (2) estimated the size of these errors using data from a completed listing exercise, with the purpose of better understanding, communicating, and dealing with them. Ten errors were identified. Most result from a lack of knowledge or measurement error (epistemic uncertainty), although two were a result of context dependence and vagueness (linguistic uncertainty). Estimates of the size of the effects of these errors were substantial in a number of cases and unknown in others. Most errors, and those with the largest estimated effect, result in underestimates of IAS numbers. However, there are a number of errors where the size and direction of the effect remains poorly understood. The effect of differences in opinion between specialists is potentially large, particularly for data-poor taxa and regions, and does not have a clearly directional or consistent effect on the size and composition of IAS lists. Five tactics emerged as important for reducing uncertainty in IAS lists, and while uncertainty will never be removed entirely, these approaches will significantly improve the transparency, repeatability, and comparability of IAS lists. Understanding the errors and uncertainties that occur during the process of listing invasive species, as well as the potential size and nature of their effects on IAS lists, is key to improving the value of these lists for governments, management agencies, and conservationists. Such understanding is increasingly important given positive trends in biological invasion and the associated risks to biodiversity and biosecurity.

Alien species in South Africa’s national parks

Alien species in South Africa’s national parks

Global biodiversity: indicators of recent declines

In 2002, world leaders committed, through the Convention on Biological Diversity, to achieve a significant reduction in the rate of biodiversity loss by 2010. We compiled 31 indicators to report on progress toward this target. Most indicators of the state of biodiversity (covering species' population trends, extinction risk, habitat extent and condition, and community composition) showed declines, with no significant recent reductions in rate, whereas indicators of pressures on biodiversity (including resource consumption, invasive alien species, nitrogen pollution, overexploitation, and climate change impacts) showed increases. Despite some local successes and increasing responses (including extent and biodiversity coverage of protected areas, sustainable forest management, policy responses to invasive alien species, and biodiversity-related aid), the rate of biodiversity loss does not appear to be slowing.

Characterization of the enzymatic defect in late-onset muscle phosphofructokinase deficiency. New subtype of glycogen storage disease type VII

Human phosphofructokinase (PFK) exists in tetrameric isozymic forms, at least in vitro. Muscle and liver contain homotetramers M4 and L4, respectively, whereas red cells contain five isozymes composed of M (muscle) and L (liver) type subunits, i.e., M4, M3L, M2L2, and ML3, and L4. Homozygous deficiency of muscle PFK results in the classic glycogen storage disease type VII characterized by exertional myopathy and hemolytic syndrome beginning in early childhood. The genetic lesion results in a total and partial loss of muscle and red cell PFK, respectively. Characteristically, the residual red cell PFK from the patients consists of isolated L4 isozyme; the M-containing hybrid isozymes are completely absent. In this study, we investigated an 80-yr-old man who presented with a 10-yr history of progressive weakness of the lower limbs as the only symptom. The residual red cell PFK showed the presence of a few M-containing isozymes in addition to the predominant L4 species, indicating that the genetic lesion is a "leaky" mutation of the gene coding for the M subunit. The presence of a small amount of enzyme activity in the muscle may account for the atypical myopathy in this patient.

Pyrophosphate-driven proton transport by microsomal membranes of corn coleoptiles

Corn (Zea mays L. cv Trojan T929) coleoptile membranes were fractionated on isopycnic sucrose density gradients. Two peaks of ATP-driven H(+)-transport activity, corresponding to the previously characterized tonoplast (1.07 grams per cubic centimeter) and Golgi (1.13 grams per cubic centimeter) fractions (Chanson and Taiz, Plant Physiol 1985 78: 232-240) were localized. Coincident with these were two peaks of inorganic pyrophosphate (PPi)-driven H(+)-transport. At saturating (3 millimolar) concentrations of Mg(2+):ATP, the rate of proton transport was further enhanced by the addition of 3 millimolar PPi, and the stimulation was additive, i.e. equal to the sum of the two added separately. The specific PPi analog, imidodiphosphate, antagonized PPi-driven H(+)-transport, but had no effect on ATP-driven transport. Moreover, PPi-dependent proton transport in both tonoplast-enriched and Golgi-enriched fractions was strongly promoted by 50 millimolar KNO(3), unlike the ATP-dependent H(+)-pumps of the same membranes. Taken together, the results indicate that PPi-driven proton transport is mediated by specific membrane-bound H(+)-translocating pyrophosphatases. Both potassium and a permanent anion (NO(3) (-) > Cl(-)), were required for maximum activity. The PPi-driven proton pumps were totally inhibited by N,N'-dicyclohexylcarbodiimide, but were insensitive to 100 millimolar vanadate. The PPi concentration in coleoptile extracts was determined using an NADH oxidation assay system coupled to purified pyrophosphate:fructose 6-phosphate 1-phosphotransferase (EC 2.7.1.90). The total pyrophosphate content of corn coleoptiles was 20 nanomoles/gram fresh weight. Assuming a cytoplasmic location, the calculated PPi concentration is sufficient to drive proton transport at 20% of the maximum rate measured in vitro for the tonoplast-enriched fraction, and 10% of the maximum rate for the Golgi-enriched fraction.