The ecology and macroecology of mammalian home range area

Although many studies employ allometric relationships to demonstrate possible dependence of various traits on body mass, the relationship between home range size and body mass has been perhaps the most difficult to understand. Early studies demonstrated that carnivorous species had larger home ranges than herbivorous species of similar mass. These studies also argued that scaling relations (e.g., slopes) of the former were steeper than those of the latter and explained this in terms of the distribution of food resources, which are more uniformly distributed for most herbivores than for carnivores. In contrast to these studies, we show that scaling relations of home ranges for carnivorous mammals do not differ significantly from those of herbivorous and omnivorous species and that all three exhibit slopes that are significantly steeper than predicted on the basis of energetic requirements. We also demonstrate that home range size is constrained to fit within a polygonal constraint space bounded by lines representing energetic and/or biophysical limitations, which suggests that the log-linear relationship between home range area and mass may not be the appropriate function to compare against the energetically predicted slopes of 0.75 or 1.0. It remains unclear, however, why the slope of the relationship between home range area and body mass, whether based on raw data or on constraint lines, always exceeds that predicted by the energetic needs hypothesis.

BioTIME: A database of biodiversity time series for the Anthropocene

MOTIVATION

The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.

MAIN TYPES OF VARIABLES INCLUDED

The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.

SPATIAL LOCATION AND GRAIN

BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2).

TIME PERIOD AND GRAIN

BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.

MAJOR TAXA AND LEVEL OF MEASUREMENT

BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.

SOFTWARE FORMAT

.csv and .SQL.

Population dynamics of two sympatric rodents in a variable environment: rainfall, resource availability, and predation

Precipitation plays an important role in the dynamics of species found in arid and semiarid environments. However, population fluctuations generally are driven by a combination of multiple factors whose relative contribution may vary through time and among species. We monitored fluctuations of species in three trophic levels for >17 years at a semiarid community in north-central Chile. The region is strongly affected by the El Niño Southern Oscillation, resulting in high variation in rainfall that triggers dramatic changes in food resource availability, with strong effects on upper trophic levels. We focused our analyses on the role played by endogenous and exogenous (climatic) factors on the dynamics of two important rodent species in the community, Octodon degus and Phyllotis darwini. We documented population fluctuations of several orders of magnitude in response to wet and dry episodes of different strength and duration. P. darwini reached similar maximum densities, regardless of the duration of high-rainfall events, whereas O. degus showed additive effects of multiple wet years. Time series diagnostic tools revealed oscillations with a 5-year periodicity in rainfall, which may be the cause of the same periodicity and a weak second-order signal observed in the rodent dynamics. However, the dynamics of both rodent species were dominated by strong first-order processes, suggesting an important role of direct density dependence. Intraspecific competition, expressed as the ratio of rodent density/rainfall (or food resources) explained more than two-thirds of the variation in the population rate of change, whereas less than one-third was explained by lagged rainfall (or food resources). We detected no significant effects of predation. Our results contribute to a growing number of examples of dynamics governed by the combined effect of density dependence and climatic forcing. They also reveal strong bottom-up regulation that may be common in other arid environments.

Extreme climatic events change the dynamics and invasibility of semi-arid annual plant communities

Extreme climatic events represent disturbances that change the availability of resources. We studied their effects on annual plant assemblages in a semi-arid ecosystem in north-central Chile. We analysed 130 years of precipitation data using generalised extreme-value distribution to determine extreme events, and multivariate techniques to analyse 20 years of plant cover data of 34 native and 11 exotic species. Extreme drought resets the dynamics of the system and renders it susceptible to invasion. On the other hand, by favouring native annuals, moderately wet events change species composition and allow the community to be resilient to extreme drought. The probability of extreme drought has doubled over the last 50 years. Therefore, investigations on the interaction of climate change and biological invasions are relevant to determine the potential for future effects on the dynamics of semi-arid annual plant communities.

Testing models of diversification in mice in the Abrothrix olivaceus/xanthorhinus complex in Chile and Argentina

Samples of the forest-dwelling mouse Abrothrix olivaceus and the steppe-dwelling A. xanthorhinus across a transect between 45 and 47 degrees S in southern Chile were analysed using the mitochondrial cytochrome b (cyt b) sequence, substantially adding to the data presented previously for these taxa from Argentina and Chile. The level of variation in the cyt b sequence throughout the entire olivaceus/xanthorhinus complex is comparable to that seen within a single species in many South American sigmodontine rodents, consistent with a previous conclusion that both taxa are sub-species of A. olivaceus. Haplotypes of xanthorhinus have not yet achieved reciprocal monophyly relative to those of olivaceus. We evaluate competing hypotheses for the morphological divergence of xanthorhinus and olivaceus by allopatry in Pleistocene refuges versus postglacial diversification across ecological gradients. Two contrasting patterns are predicted for plots of the distribution of pairwise genetic differences, depending on whether the taxa diverged in allopatric refuges or through selection across a gradient. Examples of both modes of diversification are found in this complex.

Cascading effect of economic globalization on human risks of scrub typhus and tick-borne rickettsial diseases

The increase in global travel and trade has facilitated the dissemination of disease vectors. Globalization can also indirectly affect vector-borne diseases through the liberalization of cross-border trade, which has far-reaching, worldwide effects on agricultural practices and may in turn influence vectors through the modification of the ecological landscape. While the cascading effect of economic globalization on vector-borne diseases, sometimes acting synergistically with regional agricultural policy, could be substantial and have significant economic, agricultural, and public health implications, research into this remains very limited. We evaluated how abandonment of rice paddies in Taiwan after joining the World Trade Organization, along with periodic plowing, an agricultural policy to reduce farm pests in abandoned fields can unexpectedly influence risks to diseases transmitted by ticks and chiggers (larval trombiculid mites), which we collected from their small-mammal hosts. Sampling was limited to abandoned (fallow) and plowed fields due to the challenge of trapping small mammals in flooded rice paddies. Striped field mice (Apodemus agrarius) are the main hosts for both vectors. They harbored six times more ticks and three times more chiggers in fallow than in plowed plots. The proportion of ticks infected with Rickettsia spp. (etiologic agent of spotted fever) was three times higher in fallow plots, while that of Orientia tsutsugamushi (scrub typhus) in chiggers was similar in both treatments. Fallow plots had more ground cover and higher vegetation than plowed ones. Moreover, ticks and chiggers in both field types were dominated by species known to infest humans. Because ticks and chiggers should exhibit very low survival in flooded rice paddies, we propose that farm abandonment in Taiwan, driven by globalization, may have inadvertently led to increased risks of spotted fever and scrub typhus. However, periodic plowing can unintentionally mitigate vector burdens. Economic globalization can have unexpected consequences on disease risk through modification of the agricultural landscape, but the outcome may also be influenced by agricultural policies, calling for further research on vector-borne diseases and their control from broader perspectives.

Effects of more frequent and prolonged El Niño events on life-history parameters of the degu, a long-lived and slow-reproducing rodent

Global climate change (GCC) can have profound effects on species whose ecology is governed primarily by climatic factors. The ecology of small mammals inhabiting semiarid Chile is strongly affected by the El Niño Southern Oscillation (ENSO). During La Niña events in this area, dry conditions prevail and species may disappear from the thorn-scrub habitat. Conversely, El Niño events bring high rainfall, and associated pulses of food trigger small-mammal population increases. We used capture-mark-recapture to study responses of the degu (Octodon degus), a dominant small mammal, to variation in rainfall over 18 years. In response to a recent trend toward wetter conditions, degus reached record-high densities and maintained more stable numbers in the area. Underlying mechanisms involved variation in adult survival, juvenile persistence, and fecundity linked to rainfall changes during consecutive years (i.e., rainfall phases). During prolonged droughts, degus had low survival and produced fewer offspring, with low persistence. Following high rainfall, these parameters reversed; consecutive wet years resulted in further increases. Weak declines in fecundity and adult survival and high persistence of juveniles explained delayed responses to deteriorating conditions in initial dry years. If GCC leads to increased frequency of El Niño events, we anticipate greater numerical dominance of degus in semiarid Chile and possible range expansion. Furthermore, degus have strong impacts on other small mammal and some plant species, are important prey species, and are agricultural pests and disease reservoirs. Hence, GCC has the potential to dramatically influence their ecology in northern Chile and to have cascading effects on other components of this system.