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1
Multifunctionality of arginine residues in the active sites of non-canonical d-amino acid transaminases. Arch Biochem Biophys 2024;756:110011. [PMID: 38649133 DOI: 10.1016/j.abb.2024.110011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 04/17/2024] [Accepted: 04/17/2024] [Indexed: 04/25/2024]
2
In search for structural targets for engineering d-amino acid transaminase: modulation of pH optimum and substrate specificity. Biochem J 2023;480:1267-1284. [PMID: 37548495 DOI: 10.1042/bcj20230233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 07/21/2023] [Accepted: 08/07/2023] [Indexed: 08/08/2023]
3
Mechanism of D-Cycloserine Inhibition of D-Amino Acid Transaminase from Haliscomenobacter hydrossis. BIOCHEMISTRY. BIOKHIMIIA 2023;88:687-697. [PMID: 37331714 DOI: 10.1134/s0006297923050115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 02/10/2023] [Accepted: 02/11/2023] [Indexed: 06/20/2023]
4
Mechanistic aspects of the transamination reactions catalyzed by D-amino acid transaminase from Haliscomenobacter hydrossis. BIOCHIMICA ET BIOPHYSICA ACTA. PROTEINS AND PROTEOMICS 2023;1871:140886. [PMID: 36496204 DOI: 10.1016/j.bbapap.2022.140886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 10/17/2022] [Accepted: 12/02/2022] [Indexed: 12/13/2022]
5
Probing the role of the residues in the active site of the transaminase from Thermobaculum terrenum. PLoS One 2021;16:e0255098. [PMID: 34324538 PMCID: PMC8320979 DOI: 10.1371/journal.pone.0255098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Accepted: 07/11/2021] [Indexed: 11/28/2022]  Open
6
Effects of pH and temperature on (S)-amine activity of transaminase from the cold-adapted bacterium Psychrobacter cryohalolentis. Extremophiles 2020;24:537-549. [PMID: 32418069 DOI: 10.1007/s00792-020-01174-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 04/27/2020] [Indexed: 10/24/2022]
7
Structural insight into the substrate specificity of PLP fold type IV transaminases. Appl Microbiol Biotechnol 2020;104:2343-2357. [PMID: 31989227 DOI: 10.1007/s00253-020-10369-6] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Revised: 12/04/2019] [Accepted: 01/09/2020] [Indexed: 01/19/2023]
8
Corrigendum: Thermostable Branched-Chain Amino Acid Transaminases From the Archaea Geoglobus acetivorans and Archaeoglobus fulgidus: Biochemical and Structural Characterization. Front Bioeng Biotechnol 2019;7:79. [PMID: 31058146 PMCID: PMC6477565 DOI: 10.3389/fbioe.2019.00079] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Accepted: 03/28/2019] [Indexed: 11/22/2022]  Open
9
Functional characterization of PLP fold type IV transaminase with a mixed type of activity from Haliangium ochraceum. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2019;1867:575-585. [PMID: 30902765 DOI: 10.1016/j.bbapap.2019.03.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Revised: 03/01/2019] [Accepted: 03/16/2019] [Indexed: 12/11/2022]
10
Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum. Biochimie 2018;158:130-138. [PMID: 30599183 DOI: 10.1016/j.biochi.2018.12.017] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 12/27/2018] [Indexed: 10/27/2022]
11
Structural characterization of geranylgeranyl pyrophosphate synthase GACE1337 from the hyperthermophilic archaeon Geoglobus acetivorans. Extremophiles 2018;22:877-888. [PMID: 30062607 DOI: 10.1007/s00792-018-1044-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2018] [Accepted: 07/20/2018] [Indexed: 01/23/2023]
12
Identification of branched-chain amino acid aminotransferases active towards (R)-(+)-1-phenylethylamine among PLP fold type IV transaminases. J Biotechnol 2018;271:26-28. [PMID: 29453991 DOI: 10.1016/j.jbiotec.2018.02.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Revised: 12/29/2017] [Accepted: 02/09/2018] [Indexed: 10/18/2022]
13
A Novel highly thermostable branched-chain amino acid aminotransferase from the crenarchaeon Vulcanisaeta moutnovskia. Enzyme Microb Technol 2016;96:127-134. [PMID: 27871372 DOI: 10.1016/j.enzmictec.2016.10.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Revised: 08/31/2016] [Accepted: 10/04/2016] [Indexed: 11/25/2022]
14
Experimental and computational studies on the unusual substrate specificity of branched-chain amino acid aminotransferase from Thermoproteus uzoniensis. Arch Biochem Biophys 2016;607:27-36. [PMID: 27523731 DOI: 10.1016/j.abb.2016.08.009] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Revised: 08/09/2016] [Accepted: 08/10/2016] [Indexed: 01/26/2023]
15
Intramolecular hydrogen bonding in the polyextremophilic short-chain dehydrogenase from the archaeon Thermococcus sibiricus and its close structural homologs. Biochimie 2015;118:82-9. [PMID: 26300061 DOI: 10.1016/j.biochi.2015.08.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Accepted: 08/19/2015] [Indexed: 01/27/2023]
16
Nicotinamidase from the thermophilic archaeon Acidilobus saccharovorans: structural and functional characteristics. BIOCHEMISTRY (MOSCOW) 2014;79:54-61. [PMID: 24512664 DOI: 10.1134/s0006297914010088] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
17
ATP-dependent DNA ligase from Thermococcus sp. 1519 displays a new arrangement of the OB-fold domain. Acta Crystallogr Sect F Struct Biol Cryst Commun 2012;68:1440-7. [PMID: 23192021 PMCID: PMC3509962 DOI: 10.1107/s1744309112043394] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2012] [Accepted: 10/18/2012] [Indexed: 11/10/2022]
18
Expression, purification, crystallization and preliminary crystallographic analysis of a thermostable DNA ligase from the archaeon Thermococcus sibiricus. Acta Crystallogr Sect F Struct Biol Cryst Commun 2012;68:163-5. [PMID: 22297989 PMCID: PMC3274393 DOI: 10.1107/s1744309111050913] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2011] [Accepted: 11/26/2011] [Indexed: 11/10/2022]
19
Expression, purification and crystallization of a thermostable short-chain alcohol dehydrogenase from the archaeon Thermococcus sibiricus. Acta Crystallogr Sect F Struct Biol Cryst Commun 2010;66:655-7. [PMID: 20516592 PMCID: PMC2882762 DOI: 10.1107/s1744309110002654] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2009] [Accepted: 01/21/2010] [Indexed: 11/10/2022]
20
Overexpression, purification and crystallization of a thermostable DNA ligase from the archaeon Thermococcus sp. 1519. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009;65:368-71. [PMID: 19342782 PMCID: PMC2664762 DOI: 10.1107/s1744309109007799] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2008] [Accepted: 03/03/2009] [Indexed: 11/11/2022]
21
Thiocyanate hydrolase, the primary enzyme initiating thiocyanate degradation in the novel obligately chemolithoautotrophic halophilic sulfur-oxidizing bacterium Thiohalophilus thiocyanoxidans. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2007;1774:1563-70. [PMID: 17964868 DOI: 10.1016/j.bbapap.2007.09.003] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2007] [Revised: 09/12/2007] [Accepted: 09/12/2007] [Indexed: 11/17/2022]
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