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Rössle M, Haag K, Ochs A, Sellinger M, Nöldge G, Perarnau JM, Berger E, Blum U, Gabelmann A, Hauenstein K. The transjugular intrahepatic portosystemic stent-shunt procedure for variceal bleeding. N Engl J Med 1994; 330:165-71. [PMID: 8264738 DOI: 10.1056/nejm199401203300303] [Citation(s) in RCA: 524] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
BACKGROUND Transjugular placement of an intrahepatic stent is a new technique to establish a portosystemic shunt for treatment of portal hypertension. A puncture needle is advanced in a catheter through the inferior vena cava into a hepatic vein; then an intrahepatic branch of the portal vein is punctured and an expandable stent of metallic mesh is implanted to establish the shunt. METHODS We attempted the stent-shunt procedure in 100 of 112 consecutive patients with variceal bleeding due to cirrhosis, who were then followed for a mean (+/- SD) of 12 +/- 6 months. Of the 100 patients, 22 had Child-Pugh class C cirrhosis, 10 were treated on an emergency basis, and 68 had alcoholic cirrhosis. The shunt was established with use of Palmaz stents expanded to 8 to 12 mm in diameter. RESULTS Technical success was achieved in 93 percent of the patients. The mean (+/- SD) time for the procedure was 1.2 +/- 0.3 hours. The shunt reduced the portal venous pressure gradient by 57 percent. Major complications were hemorrhage (intraabdominal bleeding in six patients, biliary bleeding in four, and bleeding in the liver capsule in three) and migration of the stent into the pulmonary artery (in two patients). At follow-up, stenosis of the shunt was evident in 21 patients and occlusion in 10 patients; 10 of these 31 patients had variceal rebleeding. Stenoses and occlusions of the shunt were all treated successfully by redilation, thrombolysis, or implantation of an additional stent. Hepatic encephalopathy (stages I to III) developed in 25 percent of the patients. The proportion of patients with shunts who remained free of variceal rebleeding was 92 percent at six months and 82 percent at one year. The 30-day mortality was 3 percent. The cumulative one-year survival was 85 percent. CONCLUSIONS These results suggest that the transjugular placement of an intrahepatic portosystemic stent is an effective and safe treatment for variceal hemorrhage in patients with portal hypertension due to cirrhosis.
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Fox DB, Frail DA, Price PA, Kulkarni SR, Berger E, Piran T, Soderberg AM, Cenko SB, Cameron PB, Gal-Yam A, Kasliwal MM, Moon DS, Harrison FA, Nakar E, Schmidt BP, Penprase B, Chevalier RA, Kumar P, Roth K, Watson D, Lee BL, Shectman S, Phillips MM, Roth M, McCarthy PJ, Rauch M, Cowie L, Peterson BA, Rich J, Kawai N, Aoki K, Kosugi G, Totani T, Park HS, MacFadyen A, Hurley KC. The afterglow of GRB 050709 and the nature of the short-hard gamma-ray bursts. Nature 2005; 437:845-50. [PMID: 16208362 DOI: 10.1038/nature04189] [Citation(s) in RCA: 391] [Impact Index Per Article: 19.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2005] [Accepted: 08/30/2005] [Indexed: 11/09/2022]
Abstract
The final chapter in the long-standing mystery of the gamma-ray bursts (GRBs) centres on the origin of the short-hard class of bursts, which are suspected on theoretical grounds to result from the coalescence of neutron-star or black-hole binary systems. Numerous searches for the afterglows of short-hard bursts have been made, galvanized by the revolution in our understanding of long-duration GRBs that followed the discovery in 1997 of their broadband (X-ray, optical and radio) afterglow emission. Here we present the discovery of the X-ray afterglow of a short-hard burst, GRB 050709, whose accurate position allows us to associate it unambiguously with a star-forming galaxy at redshift z = 0.160, and whose optical lightcurve definitively excludes a supernova association. Together with results from three other recent short-hard bursts, this suggests that short-hard bursts release much less energy than the long-duration GRBs. Models requiring young stellar populations, such as magnetars and collapsars, are ruled out, while coalescing degenerate binaries remain the most promising progenitor candidates.
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Soderberg AM, Kulkarni SR, Nakar E, Berger E, Cameron PB, Fox DB, Frail D, Gal-Yam A, Sari R, Cenko SB, Kasliwal M, Chevalier RA, Piran T, Price PA, Schmidt BP, Pooley G, Moon DS, Penprase BE, Ofek E, Rau A, Gehrels N, Nousek JA, Burrows DN, Persson SE, McCarthy PJ. Relativistic ejecta from X-ray flash XRF 060218 and the rate of cosmic explosions. Nature 2006; 442:1014-7. [PMID: 16943832 DOI: 10.1038/nature05087] [Citation(s) in RCA: 383] [Impact Index Per Article: 20.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2006] [Accepted: 07/13/2006] [Indexed: 11/09/2022]
Abstract
Over the past decade, long-duration gamma-ray bursts (GRBs)--including the subclass of X-ray flashes (XRFs)--have been revealed to be a rare variety of type Ibc supernova. Although all these events result from the death of massive stars, the electromagnetic luminosities of GRBs and XRFs exceed those of ordinary type Ibc supernovae by many orders of magnitude. The essential physical process that causes a dying star to produce a GRB or XRF, and not just a supernova, is still unknown. Here we report radio and X-ray observations of XRF 060218 (associated with supernova SN 2006aj), the second-nearest GRB identified until now. We show that this event is a hundred times less energetic but ten times more common than cosmological GRBs. Moreover, it is distinguished from ordinary type Ibc supernovae by the presence of 10(48) erg coupled to mildly relativistic ejecta, along with a central engine (an accretion-fed, rapidly rotating compact source) that produces X-rays for weeks after the explosion. This suggests that the production of relativistic ejecta is the key physical distinction between GRBs or XRFs and ordinary supernovae, while the nature of the central engine (black hole or magnetar) may distinguish typical bursts from low-luminosity, spherical events like XRF 060218.
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Fong W, Berger E, Margutti R, Zauderer BA. A DECADE OF SHORT-DURATION GAMMA-RAY BURST BROADBAND AFTERGLOWS: ENERGETICS, CIRCUMBURST DENSITIES, AND JET OPENING ANGLES. ACTA ACUST UNITED AC 2015. [DOI: 10.1088/0004-637x/815/2/102] [Citation(s) in RCA: 326] [Impact Index Per Article: 32.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Gezari S, Chornock R, Rest A, Huber ME, Forster K, Berger E, Challis PJ, Neill JD, Martin DC, Heckman T, Lawrence A, Norman C, Narayan G, Foley RJ, Marion GH, Scolnic D, Chomiuk L, Soderberg A, Smith K, Kirshner RP, Riess AG, Smartt SJ, Stubbs CW, Tonry JL, Wood-Vasey WM, Burgett WS, Chambers KC, Grav T, Heasley JN, Kaiser N, Kudritzki RP, Magnier EA, Morgan JS, Price PA. An ultraviolet–optical flare from the tidal disruption of a helium-rich stellar core. Nature 2012; 485:217-20. [DOI: 10.1038/nature10990] [Citation(s) in RCA: 319] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2011] [Accepted: 02/23/2012] [Indexed: 11/09/2022]
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Berger E, Price PA, Cenko SB, Gal-Yam A, Soderberg AM, Kasliwal M, Leonard DC, Cameron PB, Frail DA, Kulkarni SR, Murphy DC, Krzeminski W, Piran T, Lee BL, Roth KC, Moon DS, Fox DB, Harrison FA, Persson SE, Schmidt BP, Penprase BE, Rich J, Peterson BA, Cowie LL. The afterglow and elliptical host galaxy of the short gamma-ray burst GRB 050724. Nature 2006; 438:988-90. [PMID: 16355217 DOI: 10.1038/nature04238] [Citation(s) in RCA: 292] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2005] [Accepted: 09/14/2005] [Indexed: 11/09/2022]
Abstract
Despite a rich phenomenology, gamma-ray bursts (GRBs) are divided into two classes based on their duration and spectral hardness--the long-soft and the short-hard bursts. The discovery of afterglow emission from long GRBs was a watershed event, pinpointing their origin to star-forming galaxies, and hence the death of massive stars, and indicating an energy release of about 10(51) erg. While theoretical arguments suggest that short GRBs are produced in the coalescence of binary compact objects (neutron stars or black holes), the progenitors, energetics and environments of these events remain elusive despite recent localizations. Here we report the discovery of the first radio afterglow from the short burst GRB 050724, which unambiguously associates it with an elliptical galaxy at a redshift z = 0.257. We show that the burst is powered by the same relativistic fireball mechanism as long GRBs, with the ejecta possibly collimated in jets, but that the total energy release is 10-1,000 times smaller. More importantly, the nature of the host galaxy demonstrates that short GRBs arise from an old (> 1 Gyr) stellar population, strengthening earlier suggestions and providing support for coalescing compact object binaries as the progenitors.
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Boehm MF, Zhang L, Badea BA, White SK, Mais DE, Berger E, Suto CM, Goldman ME, Heyman RA. Synthesis and structure-activity relationships of novel retinoid X receptor-selective retinoids. J Med Chem 1994; 37:2930-41. [PMID: 8071941 DOI: 10.1021/jm00044a014] [Citation(s) in RCA: 273] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Two series of potent retinoid X receptor (RXR)-selective compounds were designed and synthesized based upon recent observation that (E)-4-[2-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-2-naphthalenyl)-1- propenyl]benzoic acid (TTNBP) binds and transactivates only the retinoic acid receptor (RAR) subtypes whereas (E)-4-[2-(3,5,5,8,8-pentamethyl-5,6,7,8- tetrahydro-2-naphthalenyl)-1-propenyl]benzoic acid (3-methyl TTNPB) binds and transactivates both the RAR and RXR subfamilies. Addition of functional groups such as methyl, chloro, bromo, or ethyl to the 3 position of the tetrahydronaphthalene moiety of 4-[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-2-naphthyl)carbonyl]benzoic acid (5a) and 4-[1-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-2- naphthyl)ethenyl]benzoic acid (6a) results in compounds which elicit potent and selective activation of the RXR class. Such RXR-selective compounds offer pharmacological tools for elucidating the biological role of the individual retinoid receptors with which they interact. Activation profiles in cotransfection and competitive binding assays as well as molecular modeling calculations demonstrate critical structural determinants that confer selectivity for members of the RXR subfamily. The most potent compound of these series, 4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethenyl]ben zoi c acid (6b), is the first RXR-selective retinoid (designated as LGD1069) to enter clinical trials for cancer indications.
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Boehm MF, Zhang L, Zhi L, McClurg MR, Berger E, Wagoner M, Mais DE, Suto CM, Davies JA, Heyman RA. Design and synthesis of potent retinoid X receptor selective ligands that induce apoptosis in leukemia cells. J Med Chem 1995; 38:3146-55. [PMID: 7636877 DOI: 10.1021/jm00016a018] [Citation(s) in RCA: 260] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Structural modifications of the retinoid X receptor (RXR) selective compound 4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2- naphthyl)ethenyl]benzoic acid (LGD1069), which is currently in phase I/IIA clinical trials for cancer and dermatological indications, have resulted in the identification of increasingly potent retinoids with > 1000-fold selectivity for the RXRs. This paper describes the design and preparation of a series of RXR selective retinoids as well as the biological data obtained from cotransfection and competitive binding assays which were used to evaluate their potency and selectivity. The most potent and selective of the analogs is 6-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2- yl)cyclopropyl]nicotinic acid (12d; LG100268). This compound has proven useful for investigating RXR dependent biological pathways including the induction of programmed cell death (PCD) and transglutaminase (TGase) activity. Our studies indicate that the induction of PCD and TGase in human leukemic myeloid cells is dependent upon activation of RXR-mediated pathways.
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Berger E, Kulkarni SR, Pooley G, Frail DA, McIntyre V, Wark RM, Sari R, Soderberg AM, Fox DW, Yost S, Price PA. A common origin for cosmic explosions inferred from calorimetry of GRB030329. Nature 2003; 426:154-7. [PMID: 14614498 DOI: 10.1038/nature01998] [Citation(s) in RCA: 258] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2003] [Accepted: 08/14/2003] [Indexed: 11/09/2022]
Abstract
Past studies have suggested that long-duration gamma-ray bursts have a 'standard' energy of E(gamma) approximately 10(51) erg in the ultra-relativistic ejecta, after correcting for asymmetries in the explosion ('jets'). But a group of sub-energetic bursts, including the peculiar GRB980425 associated with the supernova SN1998bw (E(gamma) approximately 10(48) erg), has recently been identified. Here we report radio observations of GRB030329 that allow us to undertake calorimetry of the explosion. Our data require a two-component explosion: a narrow (5 degrees opening angle) ultra-relativistic component responsible for the gamma-rays and early afterglow, and a wide, mildly relativistic component that produces the radio and optical afterglow more than 1.5 days after the explosion. The total energy release, which is dominated by the wide component, is similar to that of other gamma-ray bursts, but the contribution of the gamma-rays is energetically minor. Given the firm link of GRB030329 with SN2003dh, our result indicates a common origin for cosmic explosions in which, for reasons not yet understood, the energy in the highest-velocity ejecta is extremely variable.
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Somjen D, Binderman I, Berger E, Harell A. Bone remodelling induced by physical stress is prostaglandin E2 mediated. BIOCHIMICA ET BIOPHYSICA ACTA 1980; 627:91-100. [PMID: 6243497 DOI: 10.1016/0304-4165(80)90126-9] [Citation(s) in RCA: 231] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Rest A, Scolnic D, Foley RJ, Huber ME, Chornock R, Narayan G, Tonry JL, Berger E, Soderberg AM, Stubbs CW, Riess A, Kirshner RP, Smartt SJ, Schlafly E, Rodney S, Botticella MT, Brout D, Challis P, Czekala I, Drout M, Hudson MJ, Kotak R, Leibler C, Lunnan R, Marion GH, McCrum M, Milisavljevic D, Pastorello A, Sanders NE, Smith K, Stafford E, Thilker D, Valenti S, Wood-Vasey WM, Zheng Z, Burgett WS, Chambers KC, Denneau L, Draper PW, Flewelling H, Hodapp KW, Kaiser N, Kudritzki RP, Magnier EA, Metcalfe N, Price PA, Sweeney W, Wainscoat R, Waters C. COSMOLOGICAL CONSTRAINTS FROM MEASUREMENTS OF TYPE Ia SUPERNOVAE DISCOVERED DURING THE FIRST 1.5 yr OF THE Pan-STARRS1 SURVEY. ACTA ACUST UNITED AC 2014. [DOI: 10.1088/0004-637x/795/1/44] [Citation(s) in RCA: 231] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Drout MR, Chornock R, Soderberg AM, Sanders NE, McKinnon R, Rest A, Foley RJ, Milisavljevic D, Margutti R, Berger E, Calkins M, Fong W, Gezari S, Huber ME, Kankare E, Kirshner RP, Leibler C, Lunnan R, Mattila S, Marion GH, Narayan G, Riess AG, Roth KC, Scolnic D, Smartt SJ, Tonry JL, Burgett WS, Chambers KC, Hodapp KW, Jedicke R, Kaiser N, Magnier EA, Metcalfe N, Morgan JS, Price PA, Waters C. RAPIDLY EVOLVING AND LUMINOUS TRANSIENTS FROM PAN-STARRS1. ACTA ACUST UNITED AC 2014. [DOI: 10.1088/0004-637x/794/1/23] [Citation(s) in RCA: 205] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Nicholl M, Smartt SJ, Jerkstrand A, Inserra C, McCrum M, Kotak R, Fraser M, Wright D, Chen TW, Smith K, Young DR, Sim SA, Valenti S, Howell DA, Bresolin F, Kudritzki RP, Tonry JL, Huber ME, Rest A, Pastorello A, Tomasella L, Cappellaro E, Benetti S, Mattila S, Kankare E, Kangas T, Leloudas G, Sollerman J, Taddia F, Berger E, Chornock R, Narayan G, Stubbs CW, Foley RJ, Lunnan R, Soderberg A, Sanders N, Milisavljevic D, Margutti R, Kirshner RP, Elias-Rosa N, Morales-Garoffolo A, Taubenberger S, Botticella MT, Gezari S, Urata Y, Rodney S, Riess AG, Scolnic D, Wood-Vasey WM, Burgett WS, Chambers K, Flewelling HA, Magnier EA, Kaiser N, Metcalfe N, Morgan J, Price PA, Sweeney W, Waters C. Slowly fading super-luminous supernovae that are not pair-instability explosions. Nature 2013; 502:346-9. [DOI: 10.1038/nature12569] [Citation(s) in RCA: 204] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2013] [Accepted: 08/09/2013] [Indexed: 11/09/2022]
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Soderberg AM, Kulkarni SR, Berger E, Fox DW, Sako M, Frail DA, Gal-Yam A, Moon DS, Cenko SB, Yost SA, Phillips MM, Persson SE, Freedman WL, Wyatt P, Jayawardhana R, Paulson D. The sub-energetic γ-ray burst GRB 031203 as a cosmic analogue to the nearby GRB 980425. Nature 2004; 430:648-50. [PMID: 15295592 DOI: 10.1038/nature02757] [Citation(s) in RCA: 155] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2004] [Accepted: 06/15/2004] [Indexed: 11/09/2022]
Abstract
Over the six years since the discovery of the gamma-ray burst GRB 980425, which was associated with the nearby (distance approximately 40 Mpc) supernova 1998bw, astronomers have debated fiercely the nature of this event. Relative to bursts located at cosmological distance (redshift z approximately 1), GRB 980425 was under-luminous in gamma-rays by three orders of magnitude. Radio calorimetry showed that the explosion was sub-energetic by a factor of 10. Here we report observations of the radio and X-ray afterglow of the recent GRB 031203 (refs 5-7), which has a redshift of z = 0.105. We demonstrate that it too is sub-energetic which, when taken together with the low gamma-ray luminosity, suggests that GRB 031203 is the first cosmic analogue to GRB 980425. We find no evidence that this event was a highly collimated explosion viewed off-axis. Like GRB 980425, GRB 031203 appears to be an intrinsically sub-energetic gamma-ray burst. Such sub-energetic events have faint afterglows. We expect intensive follow-up of faint bursts with smooth gamma-ray light curves (common to both GRB 031203 and 980425) to reveal a large population of such events.
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Fischer G, Bang H, Berger E, Schellenberger A. Conformational specificity of chymotrypsin toward proline-containing substrates. BIOCHIMICA ET BIOPHYSICA ACTA 1984; 791:87-97. [PMID: 6498206 DOI: 10.1016/0167-4838(84)90285-1] [Citation(s) in RCA: 134] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
A number of peptide-4-nitroanilide substrates containing proline within the peptide chain have been synthesized and subjected to chymotryptic hydrolysis. Values of kcat and Km have been obtained from measurements at pH 7.8 and 25.0 degrees C. Kinetic studies at high enzyme concentrations up to 6.0 X 10(-4) mol X 1(-1) have allowed the evaluation of the conformational specificity of chymotrypsin due to the observation of various kinetic phases during the time-course of the reaction. When proline occupies the P2 position within the peptide chain, it is shown that the enzyme cleaves only the trans isomer of the substrate. The conformational specificity has also been studied for proline in P4 and P5 positions of the substrate. In some cases, an enzyme-catalyzed hydrolysis of the cis isomer was detected. From the amplitude ratios and the rate constants of the kinetic phases, information about the structural dependency of the cis/trans interconversion could be obtained. Charged residues N-terminal to the isomeric bond are of little influence on either cis/trans ratio or the rate of cis to trans interconversion. Extending the peptide chain N-terminal to the isomeric bond by alanine decreases to a low extent the cis content and increases the rate constant of the trans isomer formation.
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Ireland RC, Berger E, Sirotkin K, Yund MA, Osterbur D, Fristrom J. Ecdysterone induces the transcription of four heat-shock genes in Drosophila S3 cells and imaginal discs. Dev Biol 1982; 93:498-507. [PMID: 6292028 DOI: 10.1016/0012-1606(82)90137-3] [Citation(s) in RCA: 133] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Sanders NE, Soderberg AM, Gezari S, Betancourt M, Chornock R, Berger E, Foley RJ, Challis P, Drout M, Kirshner RP, Lunnan R, Marion GH, Margutti R, McKinnon R, Milisavljevic D, Narayan G, Rest A, Kankare E, Mattila S, Smartt SJ, Huber ME, Burgett WS, Draper P, Hodapp KW, Kaiser N, Kudritzki RP, Magnier EA, Metcalfe N, Morgan JS, Price PA, Tonry JL, Wainscoat RJ, Waters C. TOWARD CHARACTERIZATION OF THE TYPE IIP SUPERNOVA PROGENITOR POPULATION: A STATISTICAL SAMPLE OF LIGHT CURVES FROM Pan-STARRS1. ACTA ACUST UNITED AC 2015. [DOI: 10.1088/0004-637x/799/2/208] [Citation(s) in RCA: 130] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Scolnic D, Rest A, Riess A, Huber ME, Foley RJ, Brout D, Chornock R, Narayan G, Tonry JL, Berger E, Soderberg AM, Stubbs CW, Kirshner RP, Rodney S, Smartt SJ, Schlafly E, Botticella MT, Challis P, Czekala I, Drout M, Hudson MJ, Kotak R, Leibler C, Lunnan R, Marion GH, McCrum M, Milisavljevic D, Pastorello A, Sanders NE, Smith K, Stafford E, Thilker D, Valenti S, Wood-Vasey WM, Zheng Z, Burgett WS, Chambers KC, Denneau L, Draper PW, Flewelling H, Hodapp KW, Kaiser N, Kudritzki RP, Magnier EA, Metcalfe N, Price PA, Sweeney W, Wainscoat R, Waters C. SYSTEMATIC UNCERTAINTIES ASSOCIATED WITH THE COSMOLOGICAL ANALYSIS OF THE FIRST PAN-STARRS1 TYPE Ia SUPERNOVA SAMPLE. ACTA ACUST UNITED AC 2014. [DOI: 10.1088/0004-637x/795/1/45] [Citation(s) in RCA: 124] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Berger E, Ramsay BA, Ramsay JA, Chavarie C, Braunegg G. PHB recovery by hypochlorite digestion of non-PHB biomass. ACTA ACUST UNITED AC 1989. [DOI: 10.1007/bf01876053] [Citation(s) in RCA: 121] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Liu Y, Thoden JB, Kim J, Berger E, Gulick AM, Ruzicka FJ, Holden HM, Frey PA. Mechanistic roles of tyrosine 149 and serine 124 in UDP-galactose 4-epimerase from Escherichia coli. Biochemistry 1997; 36:10675-84. [PMID: 9271498 DOI: 10.1021/bi970430a] [Citation(s) in RCA: 120] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Synthesis and overexpression of a gene encoding Escherichia coli UDP-galactose 4-epimerase and engineered to facilitate cassette mutagenesis are described. General acid-base catalysis at the active site of this epimerase has been studied by kinetic and spectroscopic analysis of the wild-type enzyme and its specifically mutated forms Y149F, S124A, S124V, and S124T. The X-ray crystal structure of Y149F as its abortive complex with UDP-glucose is structurally similar to that of the corresponding wild-type complex, except for the absence of the phenolic oxygen of Tyr 149. The major effects of mutations are expressed in the values of kcat and kcat/Km. The least active mutant is Y149F, for which the value of kcat is 0.010% of that of the wild-type epimerase. The activity of S124A is also very low, with a kcat value that is 0.035% of that of the native enzyme. The values of Km for Y149F and S124A are 12 and 21% of that of the wild-type enzyme, respectively. The value of kcat for S124T is about 30% of that of the wild-type enzyme, and the value of Km is similar to that of the native enzyme. The reactivities of the mutants in UMP-dependent reductive inactivation by glucose are similarly affected, with kobs being decreased by 6560-, 370-, and 3.4-fold for Y149F, S124A, and S124T, respectively. The second-order rate constants for reductive inactivation by NaBH3CN, which does not require general base catalysis, are similar to that for the native enzyme in the cases of S124A, S124T, and S124V. However, Y149F reacts with NaBH3CN 12-20-fold faster than the wild-type enzyme at pH 8.5 and 7.0, respectively. The increased rate for Y149F is attributed to the weakened charge-transfer interaction between Phe 149 and NAD+, which is present with Tyr 149 in the wild-type enzyme. The charge-transfer band is present in the serine mutants, and its intensity at 320 nm is pH-dependent. The pH dependencies of A320 showed that the pKa values for Tyr 149 are 6.08 for the wild-type epimerase, 6.71 for S124A, 6.86 for S124V, and 6.28 for S124T. The low pKa value for Tyr 149 is attributed mainly to the positive electrostatic field created by NAD+ and Lys 153 (4.5 kcal mol-1) and partly to hydrogen bonding with Ser 124 (1 kcal mol-1). The pKa of Tyr 149 is the same as the kinetic pKa for the Bronsted base that facilitates hydride transfer to NAD+. We concluded that Tyr 149 provides the driving force for general acid-base catalysis, with Ser 124 playing an important role in mediating proton transfer.
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Gurevitch J, Frolkis I, Yuhas Y, Lifschitz-Mercer B, Berger E, Paz Y, Matsa M, Kramer A, Mohr R. Anti-tumor necrosis factor-alpha improves myocardial recovery after ischemia and reperfusion. J Am Coll Cardiol 1997; 30:1554-61. [PMID: 9362416 DOI: 10.1016/s0735-1097(97)00328-8] [Citation(s) in RCA: 108] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
OBJECTIVES This study sought to assess the importance of locally released or paracrine myocardial tumor necrosis factor-alpha (TNF-alpha) in the evolution of postischemic myocardial dysfunction and to use immunohistochemical studies to localize TNF-alpha within the myocardium. BACKGROUND TNF-alpha is implicated as a systemic mediator in the development of myocardial ischemia-reperfusion injury by promoting leukocyte myocardial infiltration, and it has been shown to originate from noncardiac peripheral mononuclear cells. We have recently documented in a blood-free environment the release of TNF-alpha from the ischemic-reperfused myocardium. METHODS Isolated rat hearts undergoing 1 h of global cardioplegia-induced ischemia and 30 min of reperfusion were investigated with use of the modified Langendorff model. Hearts were randomly divided into three subgroups: group A, control group; and groups B and C, isolated hearts receiving cardioplegic solution containing monoclonal hamster antimurine TNF-alpha antibodies (group B) or hamster IgG (group C). RESULTS Significant amounts of TNF-alpha were detected in group A and group C effluent on 1 min of reperfusion (752 +/- 212 and 958 +/- 409 pmol/ml, respectively). However, in group B, TNF-alpha was below detectable levels. In this group, postischemic left ventricular peak systolic pressures, first derivative of the rise in left ventricular pressure (dP/dtmax), pressure-time integral, coronary flow and O2 consumption improved (analysis of variance [ANOVA] p < 0.0001 for all variables) compared with values in groups A and C; creatine kinase levels decreased (p < 0.005); and myocardial structure was preserved. Immunohistochemical staining localized TNF-alpha to cardiac myocytes and to endothelial cells. CONCLUSIONS Anti-TNF-alpha neutralizes local TNF-alpha release from cardiac myocytes after ischemia and improves myocardial recovery during reperfusion, indicating that postischemic paracrine TNF-alpha release plays an active role in myocardial dysfunction.
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Price PA, Fox DW, Kulkarni SR, Peterson BA, Schmidt BP, Soderberg AM, Yost SA, Berger E, Djorgovski SG, Frail DA, Harrison FA, Sari R, Blain AW, Chapman SC. The bright optical afterglow of the nearby gamma-ray burst of 29 March 2003. Nature 2003; 423:844-7. [PMID: 12815424 DOI: 10.1038/nature01734] [Citation(s) in RCA: 107] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2003] [Accepted: 05/21/2003] [Indexed: 11/08/2022]
Abstract
Past studies of cosmological gamma-ray bursts (GRBs) have been hampered by their extreme distances, resulting in faint afterglows. A nearby GRB could potentially shed much light on the origin of these events, but GRBs with a redshift z <or= 0.2 have been estimated to occur only rarely, about once per decade. Here we report the discovery of the bright optical afterglow emission from the burst of 29 March 2003 (GRB030329; ref. 2). The brightness of the afterglow and the prompt report of its position resulted in extensive follow-up observations at many wavelengths, along with the measurement of the redshift, z = 0.169 (ref. 4). The gamma-ray and afterglow properties of GRB030329 are similar to those of GRBs at cosmological redshifts. Observations have already identified the progenitor as a massive star that exploded as a supernova.
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Moulin T, Tatu L, Vuillier F, Berger E, Chavot D, Rumbach L. Role of a stroke data bank in evaluating cerebral infarction subtypes: patterns and outcome of 1,776 consecutive patients from the Besançon stroke registry. Cerebrovasc Dis 2000; 10:261-71. [PMID: 10878430 DOI: 10.1159/000016068] [Citation(s) in RCA: 101] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
UNLABELLED The purpose of this study was to estimate the frequency of various risk factors, courses and outcome of infarct subtypes in a large hospital-based stroke registry. METHODS From 1987 to 1994, 1,776 stroke patients with a first-ever infarction were included in the Besançon Stroke Registry. All patients were evaluated by a standard protocol (risk factors, stroke onset, stroke courses, clinical characteristics, neuroimaging, Doppler ultrasonography and cardiac investigations). Outcome was evaluated at 30 days using the Rankin scale. RESULTS There were 1,012 men (mean age 67.2 +/- 13.7 years) and 764 women (mean age 71.4 +/- 15.6 years). At least two neuroimaging examinations were performed in 81.4% (n = 1,446) of the patients and an infarct was visible in 80.9% (n = 1,436). The second neuroimaging examination (CT or MRI) was performed after 8.2 +/- 1.6 days. 85.4% of patients were admitted on the first day of the stroke: 28.3% within 3 h and 48.4% within 6 h. In addition, stroke severity was well correlated with the short time interval between stroke onset and admission. Past medical history of hypertension was the major risk factor occurring in 57.5% of all types of infarction. While diabetes was more frequently found in small deep infarct, atrial fibrillation and history of heart failure were found in anterior circulation infarcts. The distribution of clinical presentations was conventional. Hemorrhagic transformation was found in 14.9% of the patients, especially in MCA and PCA infarcts. In all patients, logistic regression analysis determined independent predictive factors for death: clinical deterioration at the 48th hour (OR 7.5, 95% CI 4.9-11.3), initial loss of consciousness (OR 3. 3, 95% CI 2.1-4.9), age (OR 1.05, 95% CI 1.03-1.06), complete motor deficit (OR 2.6, 95% CI 1.7-3.8), history of heart failure (OR 1.9, 95% CI 1.3-3.0), lacunar syndrome (OR 0.25, 95% CI 0.10-0.60) and regressive stroke onset (OR 0.24, 95% CI 0.10-0.52). However, the outcome was clearly correlated with the infarct location. The in-hospital mortality rate was lowest in patients with small deep infarct (2.9%) or border zone infarcts (3.4%) and the highest in patients with total middle cerebral artery infarct (47.4%) or multiple infarcts (27.6%). CONCLUSION Our registry appears to be a useful tool to understand the course and outcome of a large group of nonselected patients with subtypes of infarction. It can also help to analyze the influence of specific stroke management in the different categories of stroke types.
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Alavanja MC, Brownson RC, Lubin JH, Berger E, Chang J, Boice JD. Residential radon exposure and lung cancer among nonsmoking women. J Natl Cancer Inst 1994; 86:1829-37. [PMID: 7990157 DOI: 10.1093/jnci/86.24.1829] [Citation(s) in RCA: 99] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
BACKGROUND Radon at sufficiently high concentrations is known to cause lung cancer among underground miners and in experimental laboratory animals. PURPOSE Our aim was to determine whether indoor levels of radon are associated with a detectable increase in lung cancer. Nonsmoking women were selected because they offer the best opportunity to detect radon-related risk while minimizing the potentially confounding influences of cigarette smoking and occupation. METHODS A population-based, case-control study of incident lung cancer was conducted in Missouri. A total of 538 non-smoking white women diagnosed with lung cancer between 1986 and 1992 and 1183 age-matched control subjects were identified from the Missouri Cancer Registry and from driver's license and Medicare listings, respectively. Information on lung cancer risk factors was obtained by telephone interview. Year-long radon measurements were sought in every dwelling occupied for the previous 5-30 years. RESULTS Radon measurements covered 78% of the relevant residential period, and women reported being indoors for 84% of this time. The time-weighted average radon concentrations were exactly the same for case subjects and control subjects (1.82 pCi/L of air [pCi L-1]). Radon levels greater than 4 pCi L-1 were experienced by 6.5% of the case subjects and 6.8% of the control subjects. For all data combined, there was little evidence for a trend of lung cancer with increasing radon concentrations (two-tailed trend test, P = .99 continuous data analysis; P = .19 categorical data analysis). A positive dose-response trend was suggested for the adenocarcinoma cell type and among directly interviewed women (two-tailed trend test; P = .31 continuous data analysis; P = .04 categorical data analysis), but not for other histologies or among those who had surrogate interviews. CONCLUSIONS The possibility of detecting a risk from indoor radon in this study was maximized by (a) including a large number of nonsmoking women with high indoor occupancy, (b) conducting a large number of radon measurements near the time of the diagnosis of cancer, and (c) controlling for known causes of lung cancer. However, an association between lung cancer and the exposure to domestic levels of radon was not convincingly demonstrated. IMPLICATIONS The magnitude of the lung cancer risk from radon levels commonly found in U.S. dwellings appears low.
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Eaton JW, Skelton TD, Berger E. Survival at extreme altitude: protective effect of increased hemoglobin-oxygen affinity. Science 1974; 183:743-4. [PMID: 4821240 DOI: 10.1126/science.183.4126.743] [Citation(s) in RCA: 98] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Decreased hemoglobin-oxygen affinity is thought to be of adaptive value to humans and nonindigenous animals at high altitude. To test this, hemoglobin-oxygen affinity was modified by carbamoylation of hemoglobin in rats. Exposure of control (low oxygen affinity) and experimental (high oxygen affinity) animals to a pressure equivalent to high altitude revealed that increased, rather than decreased, hemoglobin-oxygen affinity will permit survival at greatly reduced environmental oxygen pressures.
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