An ecosystem-based approach to assess the status of a Mediterranean ecosystem, the Posidonia oceanica seagrass meadow

Biotic indices, which reflect the quality of the environment, are widely used in the marine realm. Sometimes, key species or ecosystem engineers are selected for this purpose. This is the case of the Mediterranean seagrass Posidonia oceanica, widely used as a biological quality element in the context of the European Union Water Framework Directive (WFD). The good quality of a water body and the apparent health of a species, whether or not an ecosystem engineer such as P. oceanica, is not always indicative of the good structure and functioning of the whole ecosystem. A key point of the recent Marine Strategy Framework Directive (MSFD) is the ecosystem-based approach. Here, on the basis of a simplified conceptual model of the P. oceanica ecosystem, we have proposed an ecosystem-based index of the quality of its functioning, compliant with the MSFD requirements. This index (EBQI) is based upon a set of representative functional compartments, the weighting of these compartments and the assessment of the quality of each compartment by comparison of a supposed baseline. The index well discriminated 17 sites in the north-western Mediterranean (French Riviera, Provence, Corsica, Catalonia and Balearic Islands) covering a wide range of human pressure levels. The strong points of the EBQI are that it is easy to implement, non-destructive, relatively robust, according to the selection of the compartments and to their weighting, and associated with confidence indices that indicate possible weakness and biases and therefore the need for further field data acquisition.

Empirical observations of the spawning migration of European eels: The long and dangerous road to the Sargasso Sea

The spawning migration of the European eel (Anguilla anguilla L.) to the Sargasso Sea is one of the greatest animal migrations. However, the duration and route of the migration remain uncertain. Using fishery data from 20 rivers across Europe, we show that most eels begin their oceanic migration between August and December. We used electronic tagging techniques to map the oceanic migration from eels released from four regions in Europe. Of 707 eels tagged, we received 206 data sets. Many migrations ended soon after release because of predation events, but we were able to reconstruct in detail the migration routes of >80 eels. The route extended from western mainland Europe to the Azores region, more than 5000 km toward the Sargasso Sea. All eels exhibited diel vertical migrations, moving from deeper water during the day into shallower water at night. The range of migration speeds was 3 to 47 km day-1. Using data from larval surveys in the Sargasso Sea, we show that spawning likely begins in December and peaks in February. Synthesizing these results, we show that the timing of autumn escapement and the rate of migration are inconsistent with the century-long held assumption that eels spawn as a single reproductive cohort in the springtime following their escapement. Instead, we suggest that European eels adopt a mixed migratory strategy, with some individuals able to achieve a rapid migration, whereas others arrive only in time for the following spawning season. Our results have consequences for eel management.

A global-scale screening of non-native aquatic organisms to identify potentially invasive species under current and future climate conditions

The threat posed by invasive non-native species worldwide requires a global approach to identify which introduced species are likely to pose an elevated risk of impact to native species and ecosystems. To inform policy, stakeholders and management decisions on global threats to aquatic ecosystems, 195 assessors representing 120 risk assessment areas across all six inhabited continents screened 819 non-native species from 15 groups of aquatic organisms (freshwater, brackish, marine plants and animals) using the Aquatic Species Invasiveness Screening Kit. This multi-lingual decision-support tool for the risk screening of aquatic organisms provides assessors with risk scores for a species under current and future climate change conditions that, following a statistically based calibration, permits the accurate classification of species into high-, medium- and low-risk categories under current and predicted climate conditions. The 1730 screenings undertaken encompassed wide geographical areas (regions, political entities, parts thereof, water bodies, river basins, lake drainage basins, and marine regions), which permitted thresholds to be identified for almost all aquatic organismal groups screened as well as for tropical, temperate and continental climate classes, and for tropical and temperate marine ecoregions. In total, 33 species were identified as posing a 'very high risk' of being or becoming invasive, and the scores of several of these species under current climate increased under future climate conditions, primarily due to their wide thermal tolerances. The risk thresholds determined for taxonomic groups and climate zones provide a basis against which area-specific or climate-based calibrated thresholds may be interpreted. In turn, the risk rankings help decision-makers identify which species require an immediate 'rapid' management action (e.g. eradication, control) to avoid or mitigate adverse impacts, which require a full risk assessment, and which are to be restricted or banned with regard to importation and/or sale as ornamental or aquarium/fishery enhancement.

Stable species boundaries despite ten million years of hybridization in tropical eels

Genomic evidence is increasingly underpinning that hybridization between taxa is commonplace, challenging our views on the mechanisms that maintain their boundaries. Here, we focus on seven catadromous eel species (genus Anguilla) and use genome-wide sequence data from more than 450 individuals sampled across the tropical Indo-Pacific, morphological information, and three newly assembled draft genomes to compare contemporary patterns of hybridization with signatures of past introgression across a time-calibrated phylogeny. We show that the seven species have remained distinct for up to 10 million years and find that the current frequencies of hybridization across species pairs contrast with genomic signatures of past introgression. Based on near-complete asymmetry in the directionality of hybridization and decreasing frequencies of later-generation hybrids, we suggest cytonuclear incompatibilities, hybrid breakdown, and purifying selection as mechanisms that can support species cohesion even when hybridization has been pervasive throughout the evolutionary history of clades.

Biodiversity in salt marshes: from patrimonial value to ecosystem functioning. The case study of the Mont-Saint-Michel bay

Until 1979, European salt marshes were known only through the inventories of fauna and especially of flora. On such criteria, the salt marshes of the Mont-Saint-Michel bay (France) were regarded as most significant of the French coasts. However, it took 20 years of research on the role of these wetlands of the estuaries-salt marsh systems to highlight the ecological, social and economic interest of this ecotone, between continental and marine systems, a long time considered as territory "without value", except for stock breeders or hunters.

Sublethal effects of exposure to chemical compounds: a cause for the decline in Atlantic eels?

Because of their unusual life cycle, American and European eels (Anguilla rostrata Lesueur and A. anguilla L.), are particularly exposed to pollutant effects. Because silver eels fast when they leave the freshwater system, the transoceanic migration forces them to constitute energy reserves in the form of muscle lipids, that are needed for successful spawning. Using species biological data, toxicological and ecotoxicological information, hypotheses are given to assess the contribution of pollution from freshwater sources to the recorded decline in the American and European eels fisheries since the 1980s. This paper first describes the lipid storage problems and the relative migratory capacities. Then several studies on the accumulation of xenobiotics in various anatomical compartments, on the biological half-lives of these compounds, and on their sublethal toxicity, are reviewed. During migration, lipid mobilization returns persistent lipophilic pollutants back into circulation, these being concentrated particularly in gonads at the crucial time of gametogenesis. Extrapolation of toxicological analysis (individual physiology) to the population level (spawning success) suggests that the quality of future spawners leaving freshwaters is one of the prime factors for the conservation of this threatened species.

Influence of introduced vs. native parasites on the body condition of migrant silver eels

Because parasitism is among the reasons invoked to explain the collapse of Anguilla anguilla, we evaluated the parasitic constraint on body condition (BC) of migrant silver eels as a proxy of fitness with inter-site comparisons. Metazoan parasites were studied in 149 silver eels from five sites (northern Europe). In total, 89% were infected by 13 species including Myxozoa, Monogenea, Cestoda, Nematoda, and Acanthocephala. Anguillicoloides crassus was most common (56%), then Acanthocephalus clavula (30%), and Pseudodactylogyrus sp. (17%). BC, calculated for 58 females, was negatively correlated by abundance of the introduced Pseudodactylogyrus sp. but not by other parasite taxa. Nevertheless, the introduced A. crassus was considered as a severe pathogen based on previous data, whereas the native A. clavula was supposed to have limited impact. Parasite component communities and BC were different between sites. Silver eels from Stockholm Archipelago (Sweden) were the least parasitized (40% vs. 90-95% for other sites) with no parasites on the gills. Burrishoole (Ireland) differed by the absence of A. crassus and high prevalence of A. clavula (84%) but without consequences on BC. Gudenaa (Denmark), Corrib (Ireland), and Frémur (France) were close due to high prevalence of A. crassus (89-93%). Gudenaa and Corrib were the most similar because Pseudodactylogyrus sp. was also highly prevalent (respectively 71% and 60%) whereas absent in Frémur. Our results suggest that the fitness loss induced by the introduced parasites could affect the spawning success of migrant silver eels from Gudenaa and Corrib, and to a lesser extent from Frémur, but probably not those from Stockholm Archipelago and Burrishoole.

Le marais doux endigué de Bourgneuf-Machecoul (Pays de Loire) Premier éléments de connaissance du peuplement piscicole. Relation ichtyofaune-habitat et problèmes majeurs de gestion (Maroc)

Le peuplement ichtyologique d'un marais littoral endigué, géré en eau douce, a été étudié sur une zone de 2 700 ha, située au nord du marais Breton-Vendéen (Loire-Atlantique, France). Le réseau hydraulique, qui représente près de 16 % de cette surface, se compose, d'environ 91 m de linéaire de fossés par ha (en tout 234 km) et de bassins présents uniquement dans la partie d'origine salicole du marais. Les hauteurs d'eau, l'envasement et le recouvrement par la végétation aquatique dépendent de la gestion humaine et sont très variables (moyennes respectives : 42 cm; 43 cm; 70 %). Cela se traduit par un morcellement spatial de l'habitat pour les poissons. La stratégie d'échantillonnage adoptée, qui tient compte de cette hétérogénéité, a permis de décrire un peuplement comportant 21 espèces. Dominé par les poissons-chats et par les anguilles, ce dernier est caractéristique de la zone à brèmes des cours d'eau. Les abondances sont relativement élevées (en moyenne 315 kg/ha et 11 460 poissons/ha), mais elles sont très hétérogènes. L'évolution qualitative et quantitative de la répartition spatio-temporelle est décrite à l'aide d'une analyse factorielle des correspondances portant sur 74 échantillons prélevés par pêche électrique entre 1987 et 1989. Bien que l'approche de ce milieu soit complexe et les références bibliographiques relativement rares, l'analyse des premières données permet d'ores et déjà d'identifier quelques problèmes de gestion ayant des répercussions directes sur le peuplement piscicole de cette zone.

Clues to the location of the spawning area and larval migration characteristics of Anguilla mossambica as inferred from otolith microstructural analyses

The spawning area location and the larval migration characteristics of Anguilla mossambica were studied through the examination of early life-history traits (ELHT) inferred from otolith microstructural analyses of 122 glass A. mossambica collected along the eastern coast of Madagascar, in the south-western Indian Ocean. Backcalculated hatching dates of leptocephali that recruited between November 2005 and February 2006 suggested that spawning was continuous from June to November 2005, although individual migration duration periods were variable. Larvae that exhibited the highest daily otolith growth rates had the shortest leptocephalus durations and total length (L(T)) at recruitment, possibly because they reached the competence to metamorphose more rapidly and to recruit to fresh waters. Migration durations and L(T) increased from north to south on the Malagasy eastern coast, supporting earlier suggestions that A. mossambica spawns north-east of Madagascar, west of the Mascarene Ridge in the Indian Ocean.

Shorebird community variations indicative of a general perturbation in the Mont-Saint-Michel bay (France)

The Mont-Saint-Michel bay located on the East Atlantic Flyway is the first site in France for wintering shorebirds, with, on average, 53,000 individuals in January. Seven species represent 96% of that community: dunlin (Calidris alpina), knot (Calidris canutus), oystercatcher (Haematopus ostralegus), curlew (Numenius arquata), grey plover (Pluvialis squatarola), bar-tailed godwit (Limosa lapponica) and black-tailed godwit (Limosa limosa). The international bird census organised by Wetlands International in mid-January gave us the opportunity to study, for a 23 years period, population variations in the bay. Despite a quite good carrying capacity, we showed that the decreasing proportion of 4 species in the bay relative to the other French populations may indicate a general perturbation of the bay. We discuss the different hypotheses to explain that observation.

Distribution of anguillid leptocephali and possible spawning areas in the South Pacific Ocean

Seven South Pacific anguillid eel species live from New Guinea to French Polynesia, but their spawning areas and life histories are mostly unknown despite previous sampling surveys. A July-October 2016 research cruise was conducted to study the spawning areas and times, and larval distributions of South Pacific anguillid eels, which included a short 155°E station-line northeast of New Guinea and five long transects (5-25°S, 160°E-140°W) crossing the South Equatorial (SEC) and other currents. This survey collected nearly 4000 anguilliform leptocephali at 179 stations using an Isaacs-Kidd Midwater Trawl accompanied by 104 CTD casts. Based on mor-phometric observations and DNA sequencing, 74 anguillid leptocephali were collected, which in the southern areas included 29 larvae of six species: Anguilla bicolor pacifica, A. marmorata, A. australis, A. reinhardtii, A. megastoma, and A. obscura (all anguillid species of the region were caught except A. dieffenbachii). Small A. australis (9.0-16.8 mm) and A. reinhardtii (12.4, 12.5 mm) leptocephali were collected south of the Solomon Islands, other A. australis (10.8-12.0 mm) larvae were caught northwest of Fiji along with an A. obscura (20.0 mm) larva, and an A. marmorata (7.8 mm) larva was collected near Samoa. Considering collection sites, larval ages from otolith analysis, and westward SEC drift, multiple spawning locations occurred from south of the Solomon Islands and the Fiji area (16-20 days old larvae) to near Samoa (19 days old larva) during June and July in areas where high-salinity Subtropical Underwater (STUW, ~150 m depth) and the warm, low-salinity surface Fresh Pool were present. Five long hydrographic sections showed the strong Fresh Pool in the west and the STUW formation area in the east.

Resolving the trade-off between silver eel escapement and hydropower generation with simple decision rules for turbine shutdown

Hydropower plants are commonly reported as a major cause of the worldwide decline of freshwater eels (Anguillidae), so that management solutions are urgently needed to mitigate their impacts. Where downstream passage solutions are complex to develop, turbine shutdown appears as an effective management solution to protect silver eels during their river migration toward spawning areas. However, the definition of operational decision rules for turbine shutdown is challenging due to the duality between the benefit for eel conservation and the concomitant cost in term of hydropower production. Here, we proposed a decision framework for turbine shutdown based on simple hydrological criteria to guide negotiations between stakeholders toward a trade-off between silver eel escapement and hydropower generation. Eel migration was assumed to be triggered by a minimum river flow associated with a minimum discharge pulse, so that threshold values can be directly implemented as decision rules for turbine shutdown. To estimate relevant thresholds, a generic methodological framework was developed to generate alternative decision rules from data collected at hydropower plants, which can include telemetry surveys and estimates of eel abundance. A multiple-criteria decision analysis was then conducted to rank alternatives and to determine the best compromise between promoting silver eel escapement and limiting turbine shutdown duration. Graphic outputs can help stakeholders to understand the competitive interests between eel conservation and hydropower production, while visually identifying a range of consensual alternatives to support negotiations in the choice of operational thresholds. The method was illustrated for three river systems in Europe featured by distinct hydrological conditions and can be applied in other areas, providing that eel monitoring surveys and flow data are available.

Towards transferability in fish migration models: A generic operational tool for predicting silver eel migration in rivers

In the global context of river fragmentation, predicting fish migration is urgent to implement management actions aimed at protecting and promoting the free movement of diadromous fish. However, large-scale applicability of conservation measures requires transferable models that enable prediction of migration even in data-poor regions. Here, we surveyed 12 contrasted European river sites to predict the activity peaks of silver eels (Anguilla anguilla) during river migration towards spawning areas through an ensemble modelling approach. Site-specific Boosted Regression Tree (BRT) models were adjusted using standardized hydrological variables to predict migration probability, which were aggregated in consensus predictions. Results of independent cross-validations demonstrated that silver eel migration runs were accurately predicted in response to changes in river discharge. Transferability and predictive performance were improved by considering catchment-size dissimilarity between river sites (85 to 109,930 km²) when combining the site-specific predictions. Nevertheless, we provided two examples for which the effects of human actions on flow conditions were so high that they prevented reliable predictions of migration runs. Further contributions should thus take advantage of the flexibility of our approach for updating model collection with new sites to extend the predictive performance under a larger range of ecological conditions. Our transferable hydrological-based modelling framework offers an opportunity to implement large-scale management strategies for eel conservation, even in rivers where eel monitoring data lack. The BRT models and prediction functions were compiled in an R package named 'silvRpeak' to facilitate operational implementation by end-user managers, which can determine when mitigation measures should be implemented to improve river continuity (e.g. turbine shutdown and sluice gate opening) and balance their economic activity towards eel conservation. The only input required is discharge records that are widely available across European hydrological stations.

Trends of a bitterling (Rhodeus sericeus) population in a man-made ditch network

This study describes the trends of a bitterling population in the Bourgneuf Marsh in relation to human activities. Although there were no bitterling during the period 1987-91, the species rapidly colonized the ditch network sampled (density reaching 61.7 +/- 47.0 individuals/100 m2 and frequency of occurrence around 70-75%) during a 5-year period (1997-2001). Clearance operations probably favoured the expansion of this vulnerable fish species because of positive associations of bitterling with large and deep ditches that had been cleared in the last 2-3 years and characterized by a small cover of submerged plants. Management recommendations are discussed for conserving the bitterling population.

Effects of commercial fishing and predation by cormorants on the Anguilla anguilla stock of a shallow eutrophic lake

Mortality of eels Anguilla anguilla in a large shallow lake in France due to predation by the cormorant Phalacrocorax carbo was found to be moderate when compared to fishery catches over a 9 year period. The results show that, contrary to previous extrapolations made at the pan-European scale, P. carbo predation in shallow lakes is not invariably a major contributor to A. anguilla mortality, even in the presence of large colonies.

Molecular detection of the swim bladder parasite Anguillicola crassus (Nematoda) in fecal samples of the endangered European eel Anguilla anguilla

The European eel Anguilla anguilla is listed as critically endangered by the IUCN. Among many threats, the introduced parasitic nematode Anguillicola crassus is suspected to alter the eels' swim bladder and jeopardize their reproductive oceanic migration. To date, gaining knowledge about the distribution and prevalence of A. crassus requires individual sacrifice (over 50,000 eels were sacrificed for epidemiology studies since 2010). This paper describes a non-lethal molecular protocol for identifying prevalence of A. crassus in A. anguilla, based on searching for A. crassus DNA in the feces of eels. Tests using three DNA microsatellite markers specific to the nematode showed that molecular detection provided similar results to visual examination of the swim bladder in up to 80% of the cases, and allowed for comparison of prevalence among sites. Easy to implement, this non-lethal protocol for detecting A. crassus could be valuable for management plans of this endangered species.

Environmental determinism of year-to-year recruitment variability of European eel Anguilla anguilla in a small coastal catchment, the Frémur River, north-west France

The influence of environmental factors (mainly the river flow) on the year-to-year variability of European eel Anguilla anguilla fluvial recruitment in a small coastal catchment, the Frémur River (north-west France) was examined. A comprehensive survey of catches from fixed traps at two weirs located at 4.5 km (Pont es Omnes Dam) and 6.0 km (Bois Joli Dam) above the river mouth was carried out between 1997 and 2004. Young pigmented elvers (mean +/-s.d. total length, 133.7 +/- 29.6 mm) were recruited in eel-passes from February to October, but the main runs followed a modal curve from April to September with a peak centred in May to June. Catches varied greatly between years, from 381 to 26 765 elvers. For each trap, a positive linear relationship between monthly mean river flow that preceded the maximal intensity of captures and annual total catches was observed. These relationships explained 73.1% (P < 0.01) and 89.0% (P < 0.001) of the year-to-year variability of the recruitment observed in the Pont es Omnes and Bois Joli traps respectively. A significant increase in river flow at the beginning of the migration peak would thus trigger a greater proportion of A. anguilla settled in the estuary and in the downstream zone of the Fremur River to begin their freshwater colonization. The physicochemical roles of changes in river discharge in stimulating upstream migration are discussed. It is concluded that fluvial recruitment in the Fremur River is mainly determined by environmental factors.

Optimization of an "in situ" subtidal rocky-shore sampling strategy for monitoring purposes

This study compared 2 standardized protocols to monitor subtidal rocky shores. We tested 2 sampling methods (temporal unit and quadrat) to assess the efficiency of extracting biota parameters (diversity, abundance, and biomass) of macroalgae, Mollusca, and Porifera with respect to time-cost and the number of sampling units. Species richness and occurrence of rocky subtidal habitats were better described by visual censuses than by quadrats. The same estimated richness was provided by the 2 methods. The association of a visual census and a quadrat was the most efficient way for responding to the requirements. A minimum of 5 sampling units per discrete area is recommended for accurately describing habitats. Then, we tested the sensitivity of the proposed protocol on the Bizeux Islet to study the variations of community structures according to depth and station. Based on the results, recommendations for monitoring purposes have been proposed according to European directives.

European flounder foraging movements in an estuarine nursery seascape inferred from otolith microchemistry and stable isotopes

Despite the importance of estuarine nurseries in the regulation of many fish stocks, temporal and spatial movements and habitat use patterns of juvenile fish remain poorly understood. Overall, combining several movement metrics allowed us to characterize dispersal patterns of juvenile flounder, Platichthys flesus, along an estuarine seascape. Specifically, we investigated otolith microchemistry signatures (Sr:Ca and Ba:Ca ratios) and stable isotope ratios (δ13C and δ15N) in muscles of these juveniles, during three consecutive years to assess inter-annual fluctuations in their home range and isotopic niches. The morphological condition and lipid content of individuals were lower in years of high as compared to low dispersal along the estuarine gradient. We discuss these results in relation to the ecosystem productivity and intra- and inter-specific competition level, which in turn affects movements and foraging behaviors of juvenile flounders.

Invasiveness risks of naked goby, Gobiosoma bosc, to North Sea transitional waters

In recent decades, gobies have dispersed or introduced from the Ponto-Caspian region of eastern Europe in a westerly direction to North American and western European waters. By contrast, the naked goby, Gobiosoma bosc, is the only known gobiid species to have been introduced in an easterly direction from North American to western Europe. The potential invasiveness of G. bosc was assessed using the Aquatic Species Invasiveness Screening Kit (AS-ISK) for rivers and transitional waters for the western and eastern sides of the North Sea. Using globally-derived thresholds, G. bosc was assessed as low-medium invasiveness risk for both sides of the North Sea under current climate conditions. Under future climate conditions, potential invasiveness will increase for both risk assessment areas. Environmental suitability assessment indicated an increase in environmental suitability for G. bosc on the eastern coastline of the North Sea under climate change scenarios and suitability remained unchanged on the western coastline, reflecting the authors' expectations of invasiveness risk.