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Emrullahoğlu M, Üçüncü M, Karakuş E. A BODIPY aldoxime-based chemodosimeter for highly selective and rapid detection of hypochlorous acid. Chem Commun (Camb) 2014; 49:7836-8. [PMID: 23887624 DOI: 10.1039/c3cc44463e] [Citation(s) in RCA: 120] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A BODIPY-based fluorescent probe integrated with an aldoxime unit shows a remarkable fluorescence ''turn-on'' response to hypochlorous acid (HOCl). The oxidative dehydrogenation of BODIPY aldoxime by HOCl results in a distinct fluorescence enhancement as well as a change in color from red to orange.
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Karakuş E, Üçüncü M, Emrullahoğlu M. A rhodamine/BODIPY-based fluorescent probe for the differential detection of Hg(ii) and Au(iii). Chem Commun (Camb) 2014; 50:1119-21. [DOI: 10.1039/c3cc48436j] [Citation(s) in RCA: 103] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Karakuş E, Erdemir E, Demirbilek N, Liv L. Colorimetric and electrochemical detection of SARS-CoV-2 spike antigen with a gold nanoparticle-based biosensor. Anal Chim Acta 2021; 1182:338939. [PMID: 34602210 PMCID: PMC8357269 DOI: 10.1016/j.aca.2021.338939] [Citation(s) in RCA: 94] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 08/09/2021] [Accepted: 08/10/2021] [Indexed: 12/15/2022]
Abstract
Since emerging in China in December 2019, COVID-19 has spread globally, wreaked havoc for public health and economies worldwide and, given the high infectivity and unexpectedly rapid spread of the virus responsible-that is, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-urged the World Health Organization to declare it a pandemic. In response, reducing the virus's adverse effects requires developing methods of early diagnosis that are reliable, are inexpensive and offer rapid response. As demonstrated in this article, the colorimetric and electrochemical detection of SARS-CoV-2 spike antigen with gold nanoparticle-based biosensors may be one such method. In the presence of the SARS-CoV-2 spike antigen, gold nanoparticles aggregated rapidly and irreversibly due to antibody-antigen interaction and consequently changed in colour from red to purple, as easily observable with the naked eye or UV-Vis spectrometry by way of spectral redshifting with a detection limit of 48 ng/mL. Moreover, electrochemical detection was achieved by dropping developed probe solution onto the commercially available and disposable screen-printed gold electrode without requiring any electrode preparation and modification. The method identified 1 pg/mL of the SARS-CoV-2 spike antigen and showed a linear response to the SARS-CoV-2 spike antigen ranging from 1 pg/mL to 10 ng/mL. Both methods were highly specific to detecting the SARS-CoV-2 spike antigen but not other antigens, including influenza A (i.e. H1N1), MERS-CoV and Streptococcus pneumoniae, even at high concentrations.
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Karakuş E, Üçüncü M, Emrullahoğlu M. Electrophilic Cyanate As a Recognition Motif for Reactive Sulfur Species: Selective Fluorescence Detection of H2S. Anal Chem 2015; 88:1039-43. [PMID: 26626400 DOI: 10.1021/acs.analchem.5b04163] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
An ESIPT-based fluorescent dye, 3-hydroxyflavone, is chemically masked with an electrophilic cyanate motif in order to construct a fluorescent probe for cellular sulfur species. This novel probe structure, displays an extremely fast, highly sensitive and selective "turn-on" type fluorescent response toward H2S. We have also documented its utility for imaging of H2S in the living cells.
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Sayar M, Karakuş E, Güner T, Yildiz B, Yildiz UH, Emrullahoğlu M. A BODIPY-Based Fluorescent Probe to Visually Detect Phosgene: Toward the Development of a Handheld Phosgene Detector. Chemistry 2018; 24:3136-3140. [DOI: 10.1002/chem.201705613] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2017] [Indexed: 12/29/2022]
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Üçüncü M, Karakuş E, Kurulgan Demirci E, Sayar M, Dartar S, Emrullahoğlu M. BODIPY–Au(I): A Photosensitizer for Singlet Oxygen Generation and Photodynamic Therapy. Org Lett 2017; 19:2522-2525. [DOI: 10.1021/acs.orglett.7b00791] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Akpınar GE, Kuş M, Üçüncü M, Karakuş E, Artok L. Palladium-Catalyzed Alkoxycarbonylation of (Z)-2-En-4-yn Carbonates Leading to 2,3,5-Trienoates. Org Lett 2011; 13:748-51. [DOI: 10.1021/ol102989q] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Emrullahoğlu M, Karakuş E, Üçüncü M. A rhodamine based “turn-on” chemodosimeter for monitoring gold ions in synthetic samples and living cells. Analyst 2013; 138:3638-41. [DOI: 10.1039/c3an00024a] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Üçüncü M, Karakuş E, Emrullahoğlu M. A BODIPY-based fluorescent probe for ratiometric detection of gold ions: utilization of Z-enynol as the reactive unit. Chem Commun (Camb) 2016; 52:8247-50. [DOI: 10.1039/c6cc04100k] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Using an irreversible intramolecular cyclisation pathway triggered by gold ions, a boron-dipyrromethene (BODIPY) based fluorescent probe integrated with a reactive Z-enynol motif responds selectively to gold ions.
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Üçüncü M, Karakuş E, Emrullahoğlu M. A Ratiometric Fluorescent Probe for Gold and Mercury Ions. Chemistry 2015; 21:13201-5. [DOI: 10.1002/chem.201502411] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Indexed: 12/17/2022]
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Suna G, Gunduz S, Topal S, Ozturk T, Karakuş E. A unique triple-channel fluorescent probe for discriminative detection of cyanide, hydrazine, and hypochlorite. Talanta 2023; 257:124365. [PMID: 36827939 DOI: 10.1016/j.talanta.2023.124365] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Revised: 02/09/2023] [Accepted: 02/13/2023] [Indexed: 02/18/2023]
Abstract
Herein, the first triple-channel fluorescent probe, TTB, excited at the same wavelength (λex = 360 nm) in the same sensing medium for the detection and discrimination of cyanide, hydrazine, and hypochlorite, is disclosed. While a fluorescent white color appeared (λem = 470 nm) with the addition of cyanide ion into the probe solution, upon addition of hydrazine and hypochlorite, green (λem = 503 nm) and orange (λem = 585 nm) fluorescent colors, respectively, were observed. A naked-eye detection for the three ions was documented. With the appearance of orange color, a mega Stokes shift of 175 nm was observed. The probe exhibited excellent selectivity and lower detection limits of 0.24 μM, 4.1 nM and 0.27 μM, and dynamic ranges of 0.0-2.0 μM, 0.0-0.05 μM and 0.0-2.0 μM for cyanide, hydrazine and hypochlorite, respectively. The sensing mechanism was investigated through computational studies before and after the addition of cyanide, hypochlorite, and hydrazine, applying density functional theory (DFT), along with the calculation of optical properties by time-dependent DFT (TD-DFT) method. The results were found to be in good agreement with the experimental values. Remarkably, the probe, TTB, successfully detected cyanide, hydrazine, and hypochlorite in complex water samples. Moreover, the detection of cyanide was successfully performed in apricot kernels, as well as hypochlorite in fruits and vegetables.
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Üçüncü M, Karakuş E, Emrullahoğlu M. A BODIPY/pyridine conjugate for reversible fluorescence detection of gold(iii) ions. NEW J CHEM 2015. [DOI: 10.1039/c5nj01664a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A rare example of a fluorescent probe for the reversible detection of gold ions.
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Üçüncü M, Karakuş E, Kuş M, Akpınar GE, Aksın-Artok Ö, Krause N, Karaca S, Elmacı N, Artok L. Rhodium- and Palladium-Catalyzed 1,5-Substitution Reactions of 2-En-4-yne Acetates and Carbonates with Organoboronic Acids. J Org Chem 2011; 76:5959-71. [DOI: 10.1021/jo200201r] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Karakuş E, Sayar M, Dartar S, Kaya BU, Emrullahoğlu M. Fluorescein propiolate: a propiolate-decorated fluorescent probe with remarkable selectivity towards cysteine. Chem Commun (Camb) 2019; 55:4937-4940. [DOI: 10.1039/c9cc01774g] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A fluorescent probe decorated with an alkynyl ester unit (e.g. propiolate) displayed a selective turn-on type fluorescent response towards cysteine.
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Horzum N, Mete D, Karakuş E, Üçüncü M, Emrullahoğlu M, Demir MM. Rhodamine-Immobilised Electrospun Chitosan Nanofibrous Material as a Fluorescence Turn-On Hg2+Sensor. ChemistrySelect 2016. [DOI: 10.1002/slct.201600027] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Sadak AE, Karakuş E. Triazatruxene-Rhodamine-Based Ratiometric Fluorescent Chemosensor for the Sensitive, Rapid Detection of Trivalent Metal Ions: Aluminium (III), Iron (III) and Chromium (III). J Fluoresc 2020; 30:213-220. [PMID: 31965402 DOI: 10.1007/s10895-020-02491-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Accepted: 01/15/2020] [Indexed: 11/24/2022]
Abstract
We investigated the ability of a novel triazatruxene-rhodamine-based (TAT-ROD) chemosensor to detect the trivalent metal ions aluminium (Al3+), iron (Fe3+) and chromium (Cr3+). Operating via the through-bond energy transfer (TBET) pathway, the chemosensor exhibited low detection limits of 23.0, 25.0 and 170.0 nM for Al3+, Fe3+ and Cr3+, respectively, along with high sensitivity and selectivity during a brief period (<15 s). The binding ratio of the chemosensor and trivalent metal ions achieved by Job's method was 3:1, and when we added ethylenediaminetetraacetic acid (EDTA), the sensing process reversed. Altogether, our TAT-ROD chemosensor marks the first triazatruxene-based colorimetric and fluorometric metal ion sensor reported in the literature.
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Karakuş E, Pekyardımcı Ş, Kiliç E. Potentiometric glucose determination in human serum samples with glucose oxidase biosensor based on iodide electrode. APPL BIOCHEM MICRO+ 2013. [DOI: 10.1134/s0003683813020051] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Liv L, Yener M, Karakuş E. A novel voltammetric method for the sensitive and selective determination of carbonate or bicarbonate ions by an azomethine-H probe. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2021; 13:1925-1929. [PMID: 33913940 DOI: 10.1039/d1ay00240f] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Our study involved a simple, sensitive voltammetric method of determining either carbonate or bicarbonate ions independently with azomethine-H and a disposable pencil graphite electrode. The reduction of azomethine-H-carbonate complexes at approximately -930 mV formed in acetic acid-acetate buffer solution (pH: 4.25) was evaluated as a response. Among the results, the limits of detection and analytical ranges for carbonate ions were 3.7 μg L-1 and 9.9-700.0 μg L-1 and for bicarbonate ions were 9.0 μg L-1 and 35.0-700.0 μg L-1, and the relative standard deviations for carbonate and bicarbonate ions ranged from 1.33% and 6.93% at different concentrations. After the proposed method was applied to water, sparkling water, seawater and baking powder samples, the results were statistically evaluated and compared with those obtained from the potentiometric auto-titration system. Last, the complex stoichiometry of both carbonate and bicarbonate ions was comprehensively investigated with fluorescence and 1H-NMR spectroscopy.
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Karakuş E. A rhodamine based fluorescent chemodosimeter for the selective and sensitive detection of copper (II) ions in aqueous media and living cells. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129037] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Karakuş E, Üçüncü M, Eanes RC, Emrullahoğlu M. The utilization of pH sensitive spirocyclic rhodamine dyes for monitoring D-fructose consumption during a fermentation process. NEW J CHEM 2013. [DOI: 10.1039/c3nj00613a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Liv L, Karakuş E. Signal-Enhanced Electrochemical Determination of Quercetin with Poly(chromotrope fb)-Modified Pencil Graphite Electrode in Vegetables and Fruits. ACS OMEGA 2023; 8:12522-12531. [PMID: 37033819 PMCID: PMC10077562 DOI: 10.1021/acsomega.3c00599] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 03/10/2023] [Indexed: 06/19/2023]
Abstract
A novel signal-enhanced electrochemical sensing strategy was constructed for quercetin determination with a peculiarly developed poly(chromotrope fb)-modified activated pencil graphite electrode in vegetables and fruits. The oxidation signal of quercetin at 118 mV in an alcoholic solution served as the analytical response. The produced platform, characterized by cyclic voltammetry, electrochemical impedance spectroscopy, scanning electron microscopy, energy-dispersive X-ray spectroscopy, and X-ray photoelectron spectroscopy, could detect 1.9 nM of quercetin in the range of 0.01-1.2 μM. The extracted quercetin contents of red onion, red cabbage, cranberry, black mulberry, black raisin, and carob were determined by both the developed method and UV-visible spectroscopy. The results were statistically evaluated at the 95% confidence level, and no significant difference between the results was found.
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Suna G, Erdemir E, Liv L, Karakus AC, Gunturkun D, Ozturk T, Karakuş E. A novel thienothiophene-based "dual-responsive" probe for rapid, selective and sensitive detection of hypochlorite. Talanta 2024; 270:125545. [PMID: 38128280 DOI: 10.1016/j.talanta.2023.125545] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Revised: 12/08/2023] [Accepted: 12/10/2023] [Indexed: 12/23/2023]
Abstract
BACKGROUND Hypochlorite/hypochlorous acid (ClO-/HOCl) is a biologically crucial reactive oxygen species (ROS), produced in living organisms and has a critical role as an antimicrobial agent in the natural defense system. However, when ClO- is produced excessively, it can lead to the oxidative damage of biomolecules, resulting in organ damage and various diseases. Therefore, it is imperative to have a straightforward, quick and reliable method for over watching the minimum amount of ClO- in different environments. RESULTS Herein, a new probe TTM, containing thienothiophene and malononitrile units, was developed for exceptionally selective and sensitive hypochlorite (ClO-) detection. TTM demonstrated a rapid "turn-on" fluorescence response (<30 s), naked-eye detection (colorimetric), voltammetric read-out with anodic scan, low detection limit (LOD = 0.58 μM and 1.43 μM for optical and electrochemical methods, respectively) and applicability in detecting ClO- in real water samples and living cells. SIGNIFICANCE AND NOVELTY This study represents one of the rare examples of a small thienothiophene-based molecule for both optical and electrochemical detections of ClO- in an aqueous medium.
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Aksu EH, Akman O, Ömür AD, Karakuş E, Can İ, Kandemir FM, Dorman E, Uçar Ö. 3,3 diindolylmethane leads to apoptosis, decreases sperm quality, affects blood estradiol 17 β and testosterone, oestrogen (α and β) and androgen receptor levels in the reproductive system in male rats. Andrologia 2016; 48:1155-1165. [DOI: 10.1111/and.12554] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/29/2015] [Indexed: 12/27/2022] Open
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Erdemir E, Suna G, Gunduz S, Şahin M, Eğlence-Bakır S, Karakuş E. Tetraphenylethylene–thiosemicarbazone based ultrafast, highly sensitive detection of hypochlorite in aqueous environments and dairy products. Anal Chim Acta 2022; 1218:340029. [DOI: 10.1016/j.aca.2022.340029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 05/27/2022] [Accepted: 05/31/2022] [Indexed: 01/24/2023]
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Olgaç N, Karakuş E, Şahin Y, Liv L. Voltammetric Method for Determining Ferric Ions with Quercetin. ELECTROANAL 2021. [DOI: 10.1002/elan.202100195] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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