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Ghasemi F, Gonzalez-Cano P, Griebel P, Palmer C. Proinflammatory cytokine gene expression in endometrial cytobrush samples harvested from cows with and without subclinical endometritis. Theriogenology 2012; 78:1538-47. [DOI: 10.1016/j.theriogenology.2012.06.022] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2012] [Revised: 06/14/2012] [Accepted: 06/15/2012] [Indexed: 01/24/2023]
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Ghasemi F, Jalali M, Abdollahi A, Mohammadi S, Sanaee Z, Mohajerzadeh S. A high performance supercapacitor based on decoration of MoS2/reduced graphene oxide with NiO nanoparticles. RSC Adv 2017. [DOI: 10.1039/c7ra09060a] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
GO and MoS2 solution in combination with NiO nanoparticles present a high performance supercapacitor and excellent cycling stability.
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Ghasemi F, Jalal R. Antimicrobial action of zinc oxide nanoparticles in combination with ciprofloxacin and ceftazidime against multidrug-resistant Acinetobacter baumannii. J Glob Antimicrob Resist 2016; 6:118-122. [DOI: 10.1016/j.jgar.2016.04.007] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2015] [Revised: 04/14/2016] [Accepted: 04/15/2016] [Indexed: 10/21/2022] Open
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Bahraminasab A, Ghasemi F, Stefanovska A, McClintock PVE, Kantz H. Direction of coupling from phases of interacting oscillators: a permutation information approach. PHYSICAL REVIEW LETTERS 2008; 100:084101. [PMID: 18352623 DOI: 10.1103/physrevlett.100.084101] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2007] [Indexed: 05/05/2023]
Abstract
We introduce a directionality index for a time series based on a comparison of neighboring values. It can distinguish unidirectional from bidirectional coupling, as well as reveal and quantify asymmetry in bidirectional coupling. It is tested on a numerical model of coupled van der Pol oscillators, and applied to cardiorespiratory data from healthy subjects. There is no need for preprocessing and fine-tuning the parameters, which makes the method very simple, computationally fast and robust.
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Forouzanfar F, Amin B, Ghorbani A, Ghazavi H, Ghasemi F, Sadri K, Mehri S, Sadeghnia HR, Hosseinzadeh H. New approach for the treatment of neuropathic pain: Fibroblast growth factor 1 gene-transfected adipose-derived mesenchymal stem cells. Eur J Pain 2017; 22:295-310. [PMID: 28949091 DOI: 10.1002/ejp.1119] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/06/2017] [Indexed: 12/13/2022]
Abstract
BACKGROUND Neuropathic pain triggered by peripheral nerve lesion is extremely difficult to manage with current approaches, hence the importance of exploring therapeutic alternatives. METHODS We have analysed adipose-derived mesenchymal stem cells (AD-MSCs) and fibroblast growth factor 1 gene-transfected adipose-derived mesenchymal stem cells (AD-MSCs FGF1 ) on chronic constriction injury (CCI). The mechanical and thermal hypersensitivity were assessed using the von Frey filament, radiant heat and acetone drop tests. Histopathological and apoptotic changes and the level of FGF1, GFAP and TNFα proteins were assessed in the lumbar portion (L4-L6). Moreover, AD-MSCs FGF1 were labelled with 99m Tc -HMPAO and isolated organ counting were performed upon AD-MSCs FGF1 administration. RESULTS Administration of AD-MSCs FGF1 attenuated the CCI-induced mechanical and thermal hypersensitivity. Spinal structural alterations and apoptosis were decreased in the AD-MSCs FGF1 group. The injection of either phosphate-buffered saline or normal NIH3T3 fibroblasts could not attenuate the behavioural symptoms of neuropathic pain. Increased genetically engineered cells were counted in the injured sciatic nerve and the elevated levels of FGF1 were detected in the spinal tissue. Stem cell therapy lead to decrement the level of the CCI-induced TNF-α and GFAP expression. CONCLUSION The intravenous administration of AD-MSCs FGF1 could be considered as a potential remedy for the management of neuropathic pain. SIGNIFICANCE AD-MSCs FGF1 attenuated the CCI-induced mechanical and thermal hypersensitivity. Spinal structural alterations and apoptosis were significantly decreased in the AD-MSCs FGF1 group. Elevated levels of FGF1 were detected in the spinal tissue.
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Research Support, Non-U.S. Gov't |
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Tabar M, Ghasemi F, Peinke J, Friedrich R, Kaviani K, Taghavi F, Sadeghi S, Bizhani G, Sahimi M. New computational approaches to the analysis of interbeat intervals in human subjects. Comput Sci Eng 2006. [DOI: 10.1109/mcse.2006.29] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Jafari GR, Fazeli SM, Ghasemi F, Allaei SMV, Tabar MRR, Iraji zad A, Kavei G. Stochastic analysis and regeneration of rough surfaces. PHYSICAL REVIEW LETTERS 2003; 91:226101. [PMID: 14683250 DOI: 10.1103/physrevlett.91.226101] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2003] [Indexed: 05/24/2023]
Abstract
We investigate the Markov property of rough surfaces. Using stochastic analysis, we characterize the complexity of the surface roughness by means of a Fokker-Planck or Langevin equation. The obtained Langevin equation enables us to regenerate surfaces with similar statistical properties compared with the observed morphology by atomic force microscopy.
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Ghasemi F, Sahimi M, Peinke J, Tabar MRR. Analysis of non-stationary data for heart-rate fluctuations in terms of drift and diffusion coefficients. J Biol Phys 2006; 32:117-28. [PMID: 19669455 PMCID: PMC2646998 DOI: 10.1007/s10867-006-9006-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Abstract
We describe a method for analyzing the stochasticity in non-stationary data for the beat-to-beat fluctuations in the heart rates of healthy subjects, as well as those with congestive heart failure. The method analyzes the return time series of the data as a Markov process, and computes the Markov time scale, i.e., the time scale over which the data are a Markov process. We also construct an effective stochastic continuum equation for the return series. We show that the drift and diffusion coefficients, as well as the amplitude of the return time series for healthy subjects are distinct from those with CHF. Thus, the method may potentially provide a diagnostic tool for distinguishing healthy subjects from those with congestive heart failure, as it can distinguish small differences between the data for the two classes of subjects in terms of well-defined and physically-motivated quantities.
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Bahraminasab A, Kenwright D, Stefanovska A, Ghasemi F, McClintock PVE. Phase coupling in the cardiorespiratory interaction. IET Syst Biol 2008; 2:48-54. [PMID: 18248086 DOI: 10.1049/iet-syb:20060087] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Markovian analysis is applied to derive nonlinear stochastic equations for the reconstruction of heart rate and respiration rate variability data. A model of their 'phase' interactions is obtained for the first time, thereby gaining new insights into the strength and direction of the cardiorespiratory phase coupling. The reconstructed model can reproduce synchronisation phenomena between the cardiac and the respiratory systems, including switches in synchronisation ratio. The technique is equally applicable to the extraction of the multi-dimensional couplings between many interacting subsystems.
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Validation Study |
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Bahraminasab A, Ghasemi F, Stefanovska A, McClintock PVE, Friedrich R. Physics of brain dynamics: Fokker-Planck analysis reveals changes in EEG delta and theta activity during anaesthesia. NEW JOURNAL OF PHYSICS 2009; 11:103051. [PMID: 20823955 PMCID: PMC2933827 DOI: 10.1088/1367-2630/11/10/103051] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
We use drift and diffusion coefficients to reveal interactions between different oscillatory processes underlying a complex signal and apply the method to EEG delta and theta frequencies in the brain. By analysis of data recorded from rats during anaesthesia we consider the stability and basins of attraction of fixed points in the phase portrait of the deterministic part of the retrieved stochastic process. We show that different classes of dynamics are associated with deep and light anaesthesia, and we demonstrate that the predominant directionality of the interaction is such that theta drives delta.
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research-article |
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Bahraminasab A, Ghasemi F, Stefanovska A, McClintock PVE, Friedrich R. Physics of brain dynamics: Fokker-Planck analysis reveals changes in EEG delta and theta activity during anaesthesia. NEW JOURNAL OF PHYSICS 2009. [PMID: 20823955 DOI: 10.1088/1367-2630/11/9/095011] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
We use drift and diffusion coefficients to reveal interactions between different oscillatory processes underlying a complex signal and apply the method to EEG delta and theta frequencies in the brain. By analysis of data recorded from rats during anaesthesia we consider the stability and basins of attraction of fixed points in the phase portrait of the deterministic part of the retrieved stochastic process. We show that different classes of dynamics are associated with deep and light anaesthesia, and we demonstrate that the predominant directionality of the interaction is such that theta drives delta.
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Movahed MS, Ghasemi F, Rahvar S, Tabar MRR. Long-range correlation in cosmic microwave background radiation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:021103. [PMID: 21928945 DOI: 10.1103/physreve.84.021103] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2011] [Indexed: 05/31/2023]
Abstract
We investigate the statistical anisotropy and gaussianity of temperature fluctuations of Cosmic Microwave Background (CMB) radiation data from the Wilkinson Microwave Anisotropy Probe survey, using the Multifractal Detrended Fluctuation Analysis, Rescaled Range, and Scaled Windowed Variance methods. Multifractal Detrended Fluctuation Analysis shows that CMB fluctuations has a long-range correlation function with a multifractal behavior. By comparing the shuffled and surrogate series of CMB data, we conclude that the multifractality nature of the temperature fluctuation of CMB radiation is mainly due to the long-range correlations, and the map is consistent with a gaussian distribution.
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Tabandeh F, Hosseinian Moghaddam HR, Yakhchali B, Shariati P, Hamed Mousavian MT, Ghasemi F. FED-BATCH FERMENTATION OFBACILLUS CLAUSIIFOR EFFICIENT PRODUCTION OF ALKALINE PROTEASE USING DIFFERENT FEEDING STRATEGIES. CHEM ENG COMMUN 2011. [DOI: 10.1080/00986445.2011.552024] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Avan A, Shahidsales S, Ghasemi F, Ahmadi-Simab S, Mahdavian Zadeh R, Sahebkar A. 257P Molecular mechanisms involved in the synergistic interaction of novel formulated curcumin with gemcitabine in pancreatic cancer cells. Ann Oncol 2016. [DOI: 10.1093/annonc/mdw582.038] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Avan A, Shahidsales S, Bahmani Z, Ghasemi F, Hassanian S, Sahebkar A. 19P Curcumin oleoresin inhibits cell growth and migratory properties of breast cancer cells through inhibition of NF-kB pathway. Ann Oncol 2016. [DOI: 10.1093/annonc/mdw573.018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Nakhaei M, Khankeh H, Ghasemi F. Review Paper: Indicators of Life Recovery after Disasters and Emergencies. HEALTH IN EMERGENCIES & DISASTERS QUARTERLY 2016. [DOI: 10.15412/j.hdq.09010301] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
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Khalafi M, Symonds ME, Sakhaei MH, Ghasemi F. The effects of exercise training on circulating adhesion molecules in adults: A systematic review and meta-analysis. PLoS One 2023; 18:e0292734. [PMID: 37831667 PMCID: PMC10575525 DOI: 10.1371/journal.pone.0292734] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 09/27/2023] [Indexed: 10/15/2023] Open
Abstract
INTRODUCTION The current meta-analysis investigated the effects of exercise training on circulating adhesion molecules i.e. soluble intercellular adhesion molecule-1 (sICAM-1) and soluble vascular cell adhesion molecule-1 (sVCAM-1) in adults. METHOD PubMed, Web of Science, Scopus and Embase were searched to identify original articles, published in English languages journal from inception up to 31 August 2023 that compared the effects of exercise training with non-exercising control on sICAM-1 and sVCAM-1 in adults. Standardized mean differences (SMDs) and 95% CIs were calculated using random-effect models. RESULTS Twenty-three studies including 31 intervention arms and involving 1437 subjects were included in the meta-analysis. Exercise training effectively reduced sICAM-1 [SMD: -0.33 (95% CI -0.56 to -0.11), p = 0.004; I2 = 56.38%, p = 0.001; 23 intervention arms]. Subgroup analyses showed that sICAM-1 decreased in adults with age <60 years (p = 0.01) and BMI ≥ 27 kg/m2 (p = 0.002) and those with metabolic disorders (p = 0.004) and cardiovascular diseases (p = 0.005). In addition, aerobic (p = 0.02) and resistance training (p = 0.007) are effective in reducing sICAM-1. However, exercise training did not indicate a superior effect on sVCAM-1 [SMD: -0.12 (95% CI -0.29 to 0.05), p = 0.17; I2 = 36.29%, p = 0.04; 23 intervention arms]. CONCLUSION Our results show that exercise training reduces sICAM-1, but not for sVCAM-1, where both aerobic and resistance training is effective in reducing sICAM-1 in adults with metabolic disorders and cardiovascular diseases. TRIAL REGISTRATION The current meta-analysis was registered at www.crd.york.ac.uk/prospero with ID registration number: CRD42023410474.
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Meta-Analysis |
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Vakili S, Ghasemi F, Rahmati-Ahmadabad S, Amini H, Iraji R, Seifbarghi T, Farzanegi P, Azarbayjani MA. Effects of vibration therapy and vitamin D supplement on eccentric exercise-induced delayed onset muscle soreness in female students. COMPARATIVE EXERCISE PHYSIOLOGY 2020; 16:267-275. [DOI: 10.3920/cep190062] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/30/2023]
Abstract
Delayed onset muscle soreness (DOMS) appears after unaccustomed exercise and peaks 24-48 h after exercise. Vitamin D micronutrient and vibration therapy may have an effect on DOMS. The present study investigated the effects of vitamin D micronutrient and vibration therapy on DOMS. Sixty female students were randomly assigned to one of the four groups (n=15 in each group): vitamin D, vibration therapy, vitamin D + vibration therapy, and control. The participants of vitamin D groups received vitamin D (3,800 IU, 1 session daily for 7 days), while the participants of the control groups received placebo. The participants of vibration therapy groups received vibration therapy (50 Hz; 3 sets of 1 min, 1 session daily for 7 days). One day later, the participants performed eccentric exercise (a quadriceps leg extension exercise). Immediately after this exercise protocol, the participants received vitamin D or vibration therapy on basis of their groups. Pain perception, creatine kinase (CK), interleukin (IL)-6, superoxide dismutase and malondialdehyde (MDA) concentration were measured at baseline (before 7 days of intervention), after 7 days of intervention (before eccentric exercise) and 24, 48 and 72 h after eccentric exercise. Statistical analysis was employed and P≤0.05 was considered as the significant level. CK and IL-6 concentrations, as well as pain perception, were significantly lower in the vibration therapy and vitamin D groups compared to the control group 24 to 48 h after eccentric exercise. MDA concentration was significantly lower in the vibration therapy and vitamin D groups compared to the control group 48 to 72 h after eccentric exercise. In conclusion, the present study suggests that vibration therapy and vitamin D supplement may have effects against eccentric exercise-induced delayed onset muscle soreness in female students.
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Ghasemzadeh-nava H, Ghasemi F, Tajik P, Shirazi A. A review of mare endometritis in Iran. J Equine Vet Sci 2004. [DOI: 10.1016/j.jevs.2004.04.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Avan A, Shahidsales S, Bahmani Z, Ghasemi F, Hassanian S, Sahebkar A. 19P Curcumin oleoresin inhibits cell growth and migratory properties of breast cancer cells through inhibition of NF-kB pathway. Ann Oncol 2016. [DOI: 10.1016/s0923-7534(21)00181-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Sabzi F, Ghasemi F, Madani H, Faraji R. Hydatid cyst of the right atrium wall. EASTERN MEDITERRANEAN HEALTH JOURNAL = LA REVUE DE SANTE DE LA MEDITERRANEE ORIENTALE = AL-MAJALLAH AL-SIHHIYAH LI-SHARQ AL-MUTAWASSIT 2014; 19 Suppl 3:S220-S223. [PMID: 24995753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Subscribe] [Scholar Register] [Received: 01/17/2013] [Accepted: 02/19/2013] [Indexed: 06/03/2023]
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Shahidsales S, Moradi A, Ghasemi F, Anvari K, Ahmadi-Simab S, Forghanifard M, Boroushaki M, Avan A. 245P SOX15 expression was associated with poor prognosis in patients with esophageal squamous cell carcinoma: An Iranian cohort study conducted over 10 years. Ann Oncol 2016. [DOI: 10.1016/s0923-7534(21)00402-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Shahidsales S, Moradi A, Ghasemi F, Anvari K, Ahmadi-Simab S, Boroushaki M, Avan A. 251P Association of Epstein-Barr virus with prognosis of patients with esophageal squamous cell carcinoma: A retrospective cohort study. Ann Oncol 2016. [DOI: 10.1016/s0923-7534(21)00408-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Torabi M, Haririan I, Foroumadi A, Ghanbari H, Ghasemi F. A deep learning model based on the BERT pre-trained model to predict the antiproliferative activity of anti-cancer chemical compounds. SAR AND QSAR IN ENVIRONMENTAL RESEARCH 2024; 35:971-992. [PMID: 39605280 DOI: 10.1080/1062936x.2024.2431486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2024] [Accepted: 11/13/2024] [Indexed: 11/29/2024]
Abstract
Identifying new compounds with minimal side effects to enhance patients' quality of life is the ultimate goal of drug discovery. Due to the expensive and time-consuming nature of experimental investigations and the scarcity of data in traditional QSAR studies, deep transfer learning models, such as the BERT model, have recently been suggested. This study evaluated the model's performance in predicting the anti-proliferative activity of five cancer cell lines (HeLa, MCF7, MDA-MB231, PC3, and MDA-MB) using over 3,000 synthesized molecules from PubChem. The results indicated that the model could predict the class of designed small molecules with acceptable accuracy for most cell lines, except for PC3 and MDA-MB. The model's performance was further tested on an in-house dataset of approximately 25 small molecules per cell line, based on IC50 values. The model accurately predicted the biological activity class for HeLa with an accuracy of 0.77 ± 0.4 and demonstrated acceptable performance for MCF7 and MDA-MB231, with accuracy between 0.56 and 0.66. However, the results were less reliable for PC3 and HepG2. In conclusion, the ChemBERTa fine-tuned model shows potential for predicting outcomes on in-house datasets.
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Sabzi F, Ghasemi F, Madani H, Faraji R. Hydatid cyst of the right atrium wall. EASTERN MEDITERRANEAN HEALTH JOURNAL 2013. [DOI: 10.26719/2013.19.supp3.s220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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