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Granucci G, Persico M. Critical appraisal of the fewest switches algorithm for surface hopping. J Chem Phys 2007; 126:134114. [PMID: 17430023 DOI: 10.1063/1.2715585] [Citation(s) in RCA: 502] [Impact Index Per Article: 27.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this paper the authors address the problem of internal consistency in trajectory surface hopping methods, i.e., the requirement that the fraction of trajectories running on each electronic state equals the probabilities computed by the electronic time-dependent Schrodinger equation, after averaging over all trajectories. They derive a formula for the hopping probability in Tully's "fewest switches" spirit that would yield a rigorously consistent treatment. They show the relationship of Tully's widely used surface hopping algorithm with the "exact" prescription that cannot be applied when running each trajectory independently. They also bring out the connection of the consistency problem with the coherent propagation of the electronic wave function and the artifacts caused by coherent Rabi-type oscillations of the state probabilities in weak coupling regimes. A real molecule (azobenzene) and two ad hoc models serve as examples to illustrate the above theoretical arguments. Following a proposal by Truhlar's group [Zhu et al., J. Chem. Phys. 121, 7658 (2004) Zhu et al., J. Chem. Theory Comput. 1, 527 (2005)], they apply a decoherence correction to the state probabilities, in conjunction with Tully's algorithm, and they obtain satisfactory results in terms of internal consistency and of agreement with the outcomes of quantum wave packet calculations.
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Barbatti M, Granucci G, Persico M, Ruckenbauer M, Vazdar M, Eckert-Maksić M, Lischka H. The on-the-fly surface-hopping program system Newton-X: Application to ab initio simulation of the nonadiabatic photodynamics of benchmark systems. J Photochem Photobiol A Chem 2007. [DOI: 10.1016/j.jphotochem.2006.12.008] [Citation(s) in RCA: 380] [Impact Index Per Article: 21.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Granucci G, Persico M, Toniolo A. Direct semiclassical simulation of photochemical processes with semiempirical wave functions. J Chem Phys 2001. [DOI: 10.1063/1.1376633] [Citation(s) in RCA: 320] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
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Barbatti M, Ruckenbauer M, Plasser F, Pittner J, Granucci G, Persico M, Lischka H. Newton‐
X
: a surface‐hopping program for nonadiabatic molecular dynamics. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2013. [DOI: 10.1002/wcms.1158] [Citation(s) in RCA: 252] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Ciminelli C, Granucci G, Persico M. The Photoisomerization Mechanism of Azobenzene: A Semiclassical Simulation of Nonadiabatic Dynamics. Chemistry 2004; 10:2327-41. [PMID: 15112222 DOI: 10.1002/chem.200305415] [Citation(s) in RCA: 249] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
We have simulated the photoisomerization dynamics of azobenzene, taking into account internal conversion and geometrical relaxation processes, by means of a semiclassical surface hopping approach. Both n-->pi* and pi-->pi* excitations and both cis-->trans and trans-->cis conversions have been considered. We show that in all cases the torsion around the N==N double bond is the preferred mechanism. The quantum yields measured are correctly reproduced and the observed differences are explained as a result of the competition between the inertia of the torsional motion and the premature deactivation of the excited state. Recent time-resolved spectroscopic experiments are interpreted in the light of the simulated dynamics.
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Granucci G, Persico M, Zoccante A. Including quantum decoherence in surface hopping. J Chem Phys 2010; 133:134111. [DOI: 10.1063/1.3489004] [Citation(s) in RCA: 244] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
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Toniolo A, Granucci G, Martínez TJ. Conical Intersections in Solution: A QM/MM Study Using Floating Occupation Semiempirical Configuration Interaction Wave Functions. J Phys Chem A 2003. [DOI: 10.1021/jp022468p] [Citation(s) in RCA: 150] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Plasser F, Granucci G, Pittner J, Barbatti M, Persico M, Lischka H. Surface hopping dynamics using a locally diabatic formalism: Charge transfer in the ethylene dimer cation and excited state dynamics in the 2-pyridone dimer. J Chem Phys 2012; 137:22A514. [DOI: 10.1063/1.4738960] [Citation(s) in RCA: 144] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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Granucci G, Hynes JT, Millié P, Tran-Thi TH. A Theoretical Investigation of Excited-State Acidity of Phenol and Cyanophenols. J Am Chem Soc 2000. [DOI: 10.1021/ja993730j] [Citation(s) in RCA: 131] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Cusati T, Granucci G, Persico M. Photodynamics and Time-Resolved Fluorescence of Azobenzene in Solution: A Mixed Quantum-Classical Simulation. J Am Chem Soc 2011; 133:5109-23. [DOI: 10.1021/ja1113529] [Citation(s) in RCA: 126] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Martínez-Fernández L, Corral I, Granucci G, Persico M. Competing ultrafast intersystem crossing and internal conversion: a time resolved picture for the deactivation of 6-thioguanine. Chem Sci 2014. [DOI: 10.1039/c3sc52856a] [Citation(s) in RCA: 114] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
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Granucci G, Persico M, Spighi G. Surface hopping trajectory simulations with spin-orbit and dynamical couplings. J Chem Phys 2012; 137:22A501. [DOI: 10.1063/1.4707737] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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105 |
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Ferretti A, Granucci G, Lami A, Persico M, Villani G. Quantum mechanical and semiclassical dynamics at a conical intersection. J Chem Phys 1996. [DOI: 10.1063/1.471791] [Citation(s) in RCA: 90] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Fregoni J, Granucci G, Coccia E, Persico M, Corni S. Manipulating azobenzene photoisomerization through strong light-molecule coupling. Nat Commun 2018; 9:4688. [PMID: 30409994 PMCID: PMC6224570 DOI: 10.1038/s41467-018-06971-y] [Citation(s) in RCA: 79] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2018] [Accepted: 10/04/2018] [Indexed: 11/09/2022] Open
Abstract
The formation of hybrid light–molecule states (polaritons) offers a new strategy to manipulate the photochemistry of molecules. To fully exploit its potential, one needs to build a toolbox of polaritonic phenomenologies that supplement those of standard photochemistry. By means of a state-of-the-art computational photochemistry approach extended to the strong-coupling regime, here we disclose various mechanisms peculiar of polaritonic chemistry: coherent population oscillations between polaritons, quenching by trapping in dead-end polaritonic states and the alteration of the photochemical reaction pathway and quantum yields. We focus on azobenzene photoisomerization, that encompasses the essential features of complex photochemical reactions such as the presence of conical intersections and reaction coordinates involving multiple internal modes. In the strong coupling regime, a polaritonic conical intersection arises and we characterize its role in the photochemical process. Our chemically detailed simulations provide a framework to rationalize how the strong coupling impacts the photochemistry of realistic molecules. Manipulation of the photochemistry of molecules is traditionally achieved through synthetic chemical modifications. Here the authors use computational photochemistry to show how to control azobenzene photoisomerization through hybrid light–molecule states (polaritons).
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Research Support, Non-U.S. Gov't |
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Delhommelle J, Tschirwitz C, Ungerer P, Granucci G, Millié P, Pattou D, Fuchs AH. Derivation of an Optimized Potential Model for Phase Equilibria (OPPE) for Sulfides and Thiols. J Phys Chem B 2000. [DOI: 10.1021/jp994064b] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Cusati T, Granucci G, Martínez-Núñez E, Martini F, Persico M, Vázquez S. Semiempirical Hamiltonian for simulation of azobenzene photochemistry. J Phys Chem A 2011; 116:98-110. [PMID: 22107348 DOI: 10.1021/jp208574q] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We present a semiempirical Hamiltonian that provides an accurate description of the first singlet and triplet potential energy surfaces of azobenzene for use in direct simulations of the excited-state dynamics. The parameterization made use of spectroscopic and thermochemical data and the best ab initio results available to date. Two-dimensional potential energy surfaces based on constrained geometry optimizations are presented for the states that are most relevant for the photochemistry of azobenzene, namely, S(0), S(1), and S(2). In order to run simulations of the photodynamics of azobenzene in hydrocarbons or hydroxylic solvents, we determined the interactions of methane and methanol with the azo group by ab initio calculations and fitted the interactions with a QM/MM interaction Hamiltonian.
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Barbatti M, Granucci G, Persico M, Lischka H. Semiempirical molecular dynamics investigation of the excited state lifetime of ethylene. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2004.11.069] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Ciminelli C, Granucci G, Persico M. Are azobenzenophanes rotation-restricted? J Chem Phys 2005; 123:174317. [PMID: 16375538 DOI: 10.1063/1.2098628] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We simulated the photoisomerization dynamics of an azobenzenophane with a semiclassical surface hopping approach and a semiempirical reparametrized quantum mechanics/molecular mechanics Hamiltonian. Only one of the two azobenzene chromophores in the molecule is taken into account quantum mechanically: the other one is treated by molecular mechanics. Both n-->pi* and pi-->pi* excitations are considered. Our results show that the photoisomerization reaction mainly involves the rotation around the N=N double bond. The excited state relaxation features are in qualitative agreement with experimental time-resolved fluorescence results.
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Barbatti M, Bondanza M, Crespo-Otero R, Demoulin B, Dral PO, Granucci G, Kossoski F, Lischka H, Mennucci B, Mukherjee S, Pederzoli M, Persico M, Pinheiro Jr M, Pittner J, Plasser F, Sangiogo Gil E, Stojanovic L. Newton-X Platform: New Software Developments for Surface Hopping and Nuclear Ensembles. J Chem Theory Comput 2022; 18:6851-6865. [PMID: 36194696 PMCID: PMC9648185 DOI: 10.1021/acs.jctc.2c00804] [Citation(s) in RCA: 50] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Indexed: 12/01/2022]
Abstract
Newton-X is an open-source computational platform to perform nonadiabatic molecular dynamics based on surface hopping and spectrum simulations using the nuclear ensemble approach. Both are among the most common methodologies in computational chemistry for photophysical and photochemical investigations. This paper describes the main features of these methods and how they are implemented in Newton-X. It emphasizes the newest developments, including zero-point-energy leakage correction, dynamics on complex-valued potential energy surfaces, dynamics induced by incoherent light, dynamics based on machine-learning potentials, exciton dynamics of multiple chromophores, and supervised and unsupervised machine learning techniques. Newton-X is interfaced with several third-party quantum-chemistry programs, spanning a broad spectrum of electronic structure methods.
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Alexandrova AN, Tully JC, Granucci G. Photochemistry of DNA Fragments via Semiclassical Nonadiabatic Dynamics. J Phys Chem B 2010; 114:12116-28. [DOI: 10.1021/jp103322c] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Carstensen O, Sielk J, Schönborn JB, Granucci G, Hartke B. Unusual photochemical dynamics of a bridged azobenzene derivative. J Chem Phys 2010; 133:124305. [DOI: 10.1063/1.3479397] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
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Cusati T, Granucci G, Persico M, Spighi G. Oscillator strength and polarization of the forbidden n→π* band of trans-azobenzene: A computational study. J Chem Phys 2008; 128:194312. [DOI: 10.1063/1.2925678] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
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Martínez-Fernández L, Granucci G, Pollum M, Crespo-Hernández CE, Persico M, Corral I. Decoding the Molecular Basis for the Population Mechanism of the Triplet Phototoxic Precursors in UVA Light-Activated Pyrimidine Anticancer Drugs. Chemistry 2017; 23:2619-2627. [DOI: 10.1002/chem.201604543] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2016] [Indexed: 01/09/2023]
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Bruschi A, Bin W, Cirant S, Granucci G, Mantovani S, Moro A, Nowak S. A New Launcher for Real-Time ECRH Experiments on FTU. FUSION SCIENCE AND TECHNOLOGY 2017. [DOI: 10.13182/fst09-27] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Titov E, Granucci G, Götze JP, Persico M, Saalfrank P. Dynamics of Azobenzene Dimer Photoisomerization: Electronic and Steric Effects. J Phys Chem Lett 2016; 7:3591-3596. [PMID: 27542538 DOI: 10.1021/acs.jpclett.6b01401] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
While azobenzenes readily photoswitch in solution, their photoisomerization in densely packed self-assembled monolayers (SAMs) can be suppressed. Reasons for this can be steric hindrance and/or electronic quenching, e.g., by exciton coupling. We address these possibilities by means of nonadiabatic molecular dynamics with trajectory surface hopping calculations, investigating the trans → cis isomerization of azobenzene after excitation into the ππ* absorption band. We consider a free monomer, an isolated dimer and a dimer embedded in a SAM-like environment of additional azobenzene molecules, imitating in this way the gradual transition from an unconstrained over an electronically coupled to an electronically coupled and sterically hindered, molecular switch. Our simulations reveal that in comparison to the single molecule the quantum yield of the trans → cis photoisomerization is similar for the isolated dimer, but greatly reduced in the sterically constrained situation. Other implications of dimerization and steric constraints are also discussed.
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