1
|
Olson Å, Aerts A, Asiegbu F, Belbahri L, Bouzid O, Broberg A, Canbäck B, Coutinho PM, Cullen D, Dalman K, Deflorio G, van Diepen LTA, Dunand C, Duplessis S, Durling M, Gonthier P, Grimwood J, Fossdal CG, Hansson D, Henrissat B, Hietala A, Himmelstrand K, Hoffmeister D, Högberg N, James TY, Karlsson M, Kohler A, Kües U, Lee YH, Lin YC, Lind M, Lindquist E, Lombard V, Lucas S, Lundén K, Morin E, Murat C, Park J, Raffaello T, Rouzé P, Salamov A, Schmutz J, Solheim H, Ståhlberg J, Vélëz H, de Vries RP, Wiebenga A, Woodward S, Yakovlev I, Garbelotto M, Martin F, Grigoriev IV, Stenlid J. Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. New Phytol 2012; 194:1001-1013. [PMID: 22463738 DOI: 10.1111/j.1469-8137.2012.04128.x] [Citation(s) in RCA: 152] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Parasitism and saprotrophic wood decay are two fungal strategies fundamental for succession and nutrient cycling in forest ecosystems. An opportunity to assess the trade-off between these strategies is provided by the forest pathogen and wood decayer Heterobasidion annosum sensu lato. We report the annotated genome sequence and transcript profiling, as well as the quantitative trait loci mapping, of one member of the species complex: H. irregulare. Quantitative trait loci critical for pathogenicity, and rich in transposable elements, orphan and secreted genes, were identified. A wide range of cellulose-degrading enzymes are expressed during wood decay. By contrast, pathogenic interaction between H. irregulare and pine engages fewer carbohydrate-active enzymes, but involves an increase in pectinolytic enzymes, transcription modules for oxidative stress and secondary metabolite production. Our results show a trade-off in terms of constrained carbohydrate decomposition and membrane transport capacity during interaction with living hosts. Our findings establish that saprotrophic wood decay and necrotrophic parasitism involve two distinct, yet overlapping, processes.
Collapse
Affiliation(s)
- Åke Olson
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | - Andrea Aerts
- US DOE Joint Genome Institute, Walnut Creek, CA 94598, USA
| | - Fred Asiegbu
- Department of Forest Ecology, PO Box 27 Latokartanonkaari 7, 00014 University of Helsinki, Helsinki, Finland
| | - Lassaad Belbahri
- Laboratory of Soil Biology, University of Neuchâtel, Rue Emile Argand 11, CH-2000 Neuchâtel, Switzerland
| | - Ourdia Bouzid
- Microbiology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands
| | - Anders Broberg
- Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, 750 05 Uppsala, Sweden
| | - Björn Canbäck
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | - Pedro M Coutinho
- AFMB UMR 6098 CNRS/UI/UII, Case 932, 163 Avenue de Luminy 13288 Marseille cedex 9, France
| | - Dan Cullen
- Forest Products Laboratory, Madison, WI 53726, USA
| | - Kerstin Dalman
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | - Giuliana Deflorio
- Department of Plant and Soil Science, Institute of Biological and Environmental Sciences, University of Aberdeen, Cruickshank Building, St. Machar Drive, Aberdeen, AB24 3UU, Scotland UK
| | - Linda T A van Diepen
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA
| | - Christophe Dunand
- Laboratory of Cell Surfaces and Plant Signalisation 24, University Paul Sabatier (Toulouse III), UMR5546- CNRS, Chemin de Borde-Rouge, BP 42617, Auzeville 31326 Castanet-Tolosan, France
| | - Sébastien Duplessis
- UMR INRA-UHP 'Interactions Arbres/Micro-Organismes' IFR 110 'Genomique, Ecophysiologie et Ecologie Fonctionnelles' INRA-Nancy 54280 Champenoux, France
| | - Mikael Durling
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | - Paolo Gonthier
- Department of Exploitation and Protection of Agricultural and Forest Resources (Di. Va. P. R. A.) - Plant Pathology, University of Torino, Via L. da Vinci 44, I-10095 Grugliasco, Italy
| | - Jane Grimwood
- HudsonAlpha Institute for Biotechnology, 601 Genome Way Huntsville, AL 35806, USA
| | - Carl Gunnar Fossdal
- Norwegian Forest and Landscape Institute, Høgskoleveien 8, NO-1432 Ås, Norway
| | - David Hansson
- Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, 750 05 Uppsala, Sweden
| | - Bernard Henrissat
- AFMB UMR 6098 CNRS/UI/UII, Case 932, 163 Avenue de Luminy 13288 Marseille cedex 9, France
| | - Ari Hietala
- Norwegian Forest and Landscape Institute, Høgskoleveien 8, NO-1432 Ås, Norway
| | - Kajsa Himmelstrand
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | - Dirk Hoffmeister
- Pharmaceutical Biology, Friedrich-Schiller-Universität Jena, Winzerlaer Str. 2, 07745 Jena, Germany
| | - Nils Högberg
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | - Timothy Y James
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA
| | - Magnus Karlsson
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | - Annegret Kohler
- UMR INRA-UHP 'Interactions Arbres/Micro-Organismes' IFR 110 'Genomique, Ecophysiologie et Ecologie Fonctionnelles' INRA-Nancy 54280 Champenoux, France
| | - Ursula Kües
- Büsgen-Institute, Section Molecular Wood Biotechnology and Technical Mycology, University of Göttingen, Büsgenweg 2, D-37077 Göttingen, Germany
| | - Yong-Hwan Lee
- Department of Agricultural Biotechnology, Seoul National University, Seoul 151-921, Korea
| | - Yao-Cheng Lin
- VIB Department of Plant Systems Biology, Ghent University, Bioinformatics and Evolutionary Genomics, Technologiepark 927, B-9052 Gent, Belgium
| | - Mårten Lind
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | | | - Vincent Lombard
- AFMB UMR 6098 CNRS/UI/UII, Case 932, 163 Avenue de Luminy 13288 Marseille cedex 9, France
| | - Susan Lucas
- US DOE Joint Genome Institute, Walnut Creek, CA 94598, USA
| | - Karl Lundén
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | - Emmanuelle Morin
- UMR INRA-UHP 'Interactions Arbres/Micro-Organismes' IFR 110 'Genomique, Ecophysiologie et Ecologie Fonctionnelles' INRA-Nancy 54280 Champenoux, France
| | - Claude Murat
- UMR INRA-UHP 'Interactions Arbres/Micro-Organismes' IFR 110 'Genomique, Ecophysiologie et Ecologie Fonctionnelles' INRA-Nancy 54280 Champenoux, France
| | - Jongsun Park
- Department of Agricultural Biotechnology, Seoul National University, Seoul 151-921, Korea
| | - Tommaso Raffaello
- Department of Forest Ecology, PO Box 27 Latokartanonkaari 7, 00014 University of Helsinki, Helsinki, Finland
| | - Pierre Rouzé
- VIB Department of Plant Systems Biology, Ghent University, Bioinformatics and Evolutionary Genomics, Technologiepark 927, B-9052 Gent, Belgium
| | - Asaf Salamov
- US DOE Joint Genome Institute, Walnut Creek, CA 94598, USA
| | - Jeremy Schmutz
- HudsonAlpha Institute for Biotechnology, 601 Genome Way Huntsville, AL 35806, USA
| | - Halvor Solheim
- Norwegian Forest and Landscape Institute, Høgskoleveien 8, NO-1432 Ås, Norway
| | - Jerry Ståhlberg
- Department of Molecular Biology, Swedish University of Agricultural Sciences, Box 590, Husargatan 3, 751 24 Uppsala, Sweden
| | - Heriberto Vélëz
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| | - Ronald P de Vries
- Microbiology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands
| | - Ad Wiebenga
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands
| | - Steve Woodward
- Department of Plant and Soil Science, Institute of Biological and Environmental Sciences, University of Aberdeen, Cruickshank Building, St. Machar Drive, Aberdeen, AB24 3UU, Scotland UK
| | - Igor Yakovlev
- Norwegian Forest and Landscape Institute, Høgskoleveien 8, NO-1432 Ås, Norway
| | | | - Francis Martin
- UMR INRA-UHP 'Interactions Arbres/Micro-Organismes' IFR 110 'Genomique, Ecophysiologie et Ecologie Fonctionnelles' INRA-Nancy 54280 Champenoux, France
| | | | - Jan Stenlid
- Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ullsväg 26, 750 05 Uppsala, Sweden
| |
Collapse
|