Convolutional neural network-based malaria diagnosis from focus stack of blood smear images acquired using custom-built slide scanner

The present paper introduces a focus stacking-based approach for automated quantitative detection of Plasmodium falciparum malaria from blood smear. For the detection, a custom designed convolutional neural network (CNN) operating on focus stack of images is used. The cell counting problem is addressed as the segmentation problem and we propose a 2-level segmentation strategy. Use of CNN operating on focus stack for the detection of malaria is first of its kind, and it not only improved the detection accuracy (both in terms of sensitivity [97.06%] and specificity [98.50%]) but also favored the processing on cell patches and avoided the need for hand-engineered features. The slide images are acquired with a custom-built portable slide scanner made from low-cost, off-the-shelf components and is suitable for point-of-care diagnostics. The proposed approach of employing sophisticated algorithmic processing together with inexpensive instrumentation can potentially benefit clinicians to enable malaria diagnosis.

Correlation-Based Tracker-Level Fusion for Robust Visual Tracking

Although visual object tracking algorithms are capable of handling various challenging scenarios individually, none of them are robust enough to handle all the challenges simultaneously. For any online tracking by detection method, the key issue lies in detecting the target over the whole frame and updating systematically a target model based on the last detected appearance to avoid the drift phenomenon. This paper aims at proposing a novel robust tracking algorithm by fusing the frame level detection strategy of tracking, learning, & detection with the systematic model update strategy of Kernelized Correlation Filter tracker. The risk of drift is mitigated by the fact that the model updates are primarily driven by the detections that occur in the spatial neighborhood of the latest detections. The motivation behind the selection of trackers is their complementary nature in handling tracking challenges. The proposed algorithm efficiently combines the two state-of-the-art tracking algorithms based on conservative correspondence measure with strategic model updates, which takes advantages of both and outperforms them on their short ends by virtue of other. Extensive evaluation of the proposed method based on different metrics is carried out on the data sets ALOV300++, Visual Tracker Benchmark, and Visual Object Tracking. We demonstrated its performance in terms of robustness and success rate by comparing with state-of-the-art trackers.

Compressive correlation holography

We propose and demonstrate a compressive sensing (CS) framework for correlation holography. This is accomplished by adopting the principle of compressive sensing and thresholding in the two-point intensity correlation. The measurement matrix and the sensing matrix that are required for applying the CS framework here are systematically extracted from the random illuminations of the laser speckle data. Reconstruction results using CS, CS with thresholding, and intensity correlation are compared. Our study reveals that liminal CS requires far fewer samples for the reconstruction of the hologram and has wide application in image reconstruction.

Cytopathological image analysis using deep-learning networks in microfluidic microscopy

Cytopathologic testing is one of the most critical steps in the diagnosis of diseases, including cancer. However, the task is laborious and demands skill. Associated high cost and low throughput drew considerable interest in automating the testing process. Several neural network architectures were designed to provide human expertise to machines. In this paper, we explore and propose the feasibility of using deep-learning networks for cytopathologic analysis by performing the classification of three important unlabeled, unstained leukemia cell lines (K562, MOLT, and HL60). The cell images used in the classification are captured using a low-cost, high-throughput cell imaging technique: microfluidics-based imaging flow cytometry. We demonstrate that without any conventional fine segmentation followed by explicit feature extraction, the proposed deep-learning algorithms effectively classify the coarsely localized cell lines. We show that the designed deep belief network as well as the deeply pretrained convolutional neural network outperform the conventionally used decision systems and are important in the medical domain, where the availability of labeled data is limited for training. We hope that our work enables the development of a clinically significant high-throughput microfluidic microscopy-based tool for disease screening/triaging, especially in resource-limited settings.

Adaptive multifocus image fusion using block compressed sensing with smoothed projected Landweber integration in the wavelet domain

The need for image fusion in current image processing systems is increasing mainly due to the increased number and variety of image acquisition techniques. Image fusion is the process of combining substantial information from several sensors using mathematical techniques in order to create a single composite image that will be more comprehensive and thus more useful for a human operator or other computer vision tasks. This paper presents a new approach to multifocus image fusion based on sparse signal representation. Block-based compressive sensing integrated with a projection-driven compressive sensing (CS) recovery that encourages sparsity in the wavelet domain is used as a method to get the focused image from a set of out-of-focus images. Compression is achieved during the image acquisition process using a block compressive sensing method. An adaptive thresholding technique within the smoothed projected Landweber recovery process reconstructs high-resolution focused images from low-dimensional CS measurements of out-of-focus images. Discrete wavelet transform and dual-tree complex wavelet transform are used as the sparsifying basis for the proposed fusion. The main finding lies in the fact that sparsification enables a better selection of the fusion coefficients and hence better fusion. A Laplacian mixture model fit is done in the wavelet domain and estimation of the probability density function (pdf) parameters by expectation maximization leads us to the proper selection of the coefficients of the fused image. Using the proposed method compared with the fusion scheme without employing the projected Landweber (PL) scheme and the other existing CS-based fusion approaches, it is observed that with fewer samples itself, the proposed method outperforms other approaches.

Microfluidic microscopy-assisted label-free approach for cancer screening: automated microfluidic cytology for cancer screening

Each year, about 7-8 million deaths occur due to cancer around the world. More than half of the cancer-related deaths occur in the less-developed parts of the world. Cancer mortality rate can be reduced with early detection and subsequent treatment of the disease. In this paper, we introduce a microfluidic microscopy-based cost-effective and label-free approach for identification of cancerous cells. We outline a diagnostic framework for the same and detail an instrumentation layout. We have employed classical computer vision techniques such as 2D principal component analysis-based cell type representation followed by support vector machine-based classification. Analogous to criminal face recognition systems implemented with help of surveillance cameras, a signature-based approach for cancerous cell identification using microfluidic microscopy surveillance is demonstrated. Such a platform would facilitate affordable mass screening camps in the developing countries and therefore help decrease cancer mortality rate.

Particle-filter-based phase estimation in digital holographic interferometry

In this paper, we propose a particle-filter-based technique for the analysis of a reconstructed interference field. The particle filter and its variants are well proven as tracking filters in non-Gaussian and nonlinear situations. We propose to apply the particle filter for direct estimation of phase and its derivatives from digital holographic interferometric fringes via a signal-tracking approach on a Taylor series expanded state model and a polar-to-Cartesian-conversion-based measurement model. Computation of sample weights through non-Gaussian likelihood forms the major contribution of the proposed particle-filter-based approach compared to the existing unscented-Kalman-filter-based approach. It is observed that the proposed approach is highly robust to noise and outperforms the state-of-the-art especially at very low signal-to-noise ratios (i.e., especially in the range of -5 to 20 dB). The proposed approach, to the best of our knowledge, is the only method available for phase estimation from severely noisy fringe patterns even when the underlying phase pattern is rapidly varying and has a larger dynamic range. Simulation results and experimental data demonstrate the fact that the proposed approach is a better choice for direct phase estimation.

Recursive framework for joint inpainting and de-noising of photographic films

We address the problem of inpainting noisy photographs. We present a recursive image recovery scheme based on the unscented Kalman filter (UKF) to simultaneously inpaint identified damaged portions in an image and suppress film-grain noise. Inpainting of the missing observations is guided by a mask-dependent reconstruction of the image edges. Prediction within the UKF is based on a discontinuity-adaptive Markov random field prior that attempts to preserve edges while achieving noise reduction in uniform regions. We demonstrate the capability of the proposed method with many examples.

A recursive filter for despeckling SAR images

This correspondence proposes a recursive algorithm for noise reduction in synthetic aperture radar imagery. Excellent despeckling in conjunction with feature preservation is achieved by incorporating a discontinuity-adaptive Markov random field prior within the unscented Kalman filter framework through importance sampling. The performance of this method is demonstrated on both synthetic and real examples.