Genomic inbreeding depression for climatic adaptation of tropical beef cattle

Inbreeding has the potential to negatively impact animal performance. Strategies to monitor and mitigate inbreeding depression require that it can be accurately estimated. Here, we used genomewide SNP data to explore 3 alternative measures of genomic inbreeding: the diagonal elements of the genomic relationship matrix (FGRM), the proportion of homozygous SNP (FHOM), and the proportion of the genome covered by runs of homozygosity (FROH). We used 2,111 Brahman (BR) and 2,550 Tropical Composite (TC) cattle with phenotypes recorded for 10 traits of relevance to tropical adaptation. We further explored 3 marker densities ranging from a high-density chip (729,068 SNP), a medium-density chip (71,726 SNP) specifically designed for cattle, and a low-density chip (18,860 SNP) associated with the measures of inbreeding. Measures of FGRM were highly correlated across the 3 SNP densities and negatively correlated with FHOM and FROH in the BR population. In both populations, there was a strong positive correlation for each measure of inbreeding across the 3 SNP panels. We found significant ( < 0.01) inbreeding depression for various traits, particularly when using the highest-density SNP chip in the BR population, where inbreeding was negatively associated with coat color and coat type such that inbred animals presented shorter, slicker, and lighter coats. Based on FGRM using the medium-density chip, we found that a 1% increase in inbreeding in the BR and TC populations was associated with a decrease of 0.514 and 0.579 kg BW, respectively, in yearlings. In the TC population, a 1% increase in FHOM was associated with a decrease in BCS of -0.636% ( < 0.001). The low-density chip, comprising SNP associated with inbreeding, captured genes, and regions with pleiotropic effects ( < 0.001). However, it did not improve our ability to identify inbreeding depression, relative to the use of higher-density panels. We conclude that where heterogeneous populations are present, such as in tropical environments where composite animals abound, measures of inbreeding that do not depend on allele frequencies, such as FHOM and FROH, are preferable for estimating genomic inbreeding. Finally, the sustainable intensification of livestock systems in tropical regions will rely on genetic safeguards to ensure that productivity is improved while also adapting animals to cope with climate change. The results of this study are a step toward achieving that goal.

The value of research: using the Impact Tool to evaluate realised and anticipated benefits of the Cooperative Research Centre for Beef Genetic Technologies

The Cooperative Research Centre (CRC) for Beef Genetic Technologies operated for its third successive 7-year term from July 2005 to June 2012. It developed new genetic and genomic technologies and non-genetic ‘products’ (practices, processes, tools and technologies) to improve profitability, productivity, animal welfare and responsible resource use of Australian beef businesses. In this paper we assess how well the third-term Beef CRC met its objectives, at the end of its funding period, using the Impact Tool software package developed by the CRC Program of the Commonwealth Government. The Impact Tool generates two commonly used measures of return on investment: the net present value (NPV) and the benefit : cost ratio (BCR). The NPV, the sum of discounted benefits minus the sum of discounted costs, was $233.2 m, when evaluated over the period 2005/06–2020/21. The BCR, the sum of discounted benefits divided by the sum of discounted costs, was 2.94, over the same period. Thus on both measures, investing in the Beef CRC is expected to have been profitable. We conclude by noting that the value of the Impact Tool is not only for ex-ante and ex-post evaluation of the impacts of particular technologies, but it also provides a very effective tool for RD&E project planning.

Multi-trait assessment of early-in-life female, male and genomic measures for use in genetic selection to improve female reproductive performance of Brahman cattle

Early-in-life female and male measures with potential to be practical genetic indicators were chosen from earlier analyses and examined together with genomic measures for multi-trait use to improve female reproduction of Brahman cattle. Combinations of measures were evaluated on the genetic gains expected from selection of sires and dams for each of age at puberty (AGECL, i.e. first observation of a corpus luteum), lactation anoestrous interval in 3-year-old cows (LAI), and lifetime annual weaning rate (LAWR, i.e. the weaning rate of cows based on the number of annual matings they experienced over six possible matings). Selection was on an index of comparable records for each combination. Selection intensities were less than theoretically possible but assumed a concerted selection effort was able to be made across the Brahman breed. The results suggested that substantial genetic gains could be possible but need to be confirmed in other data. The estimated increase in LAWR in 10 years, for combinations without or with genomic measures, ranged from 8 to 12 calves weaned per 100 cows from selection of sires, and from 12 to 15 calves weaned per 100 cows from selection of sires and dams. Corresponding reductions in LAI were 60–103 days or 94–136 days, and those for AGECL were 95–125 or 141–176 days, respectively. Coat score (a measure of the sleekness or wooliness of the coat) and hip height in females, and preputial eversion and liveweight in males, were measures that may warrant wider recording for Brahman female reproduction genetic evaluation. Pregnancy-test outcomes from Matings 1 and 2 also should be recorded. Percentage normal sperm may be important to record for reducing LAI and scrotal size and serum insulin-like growth factor-I concentration in heifers at 18 months for reducing AGECL. Use of a genomic estimated breeding value (EBV) in combination with other measures added to genetic gains, especially at genomic EBV accuracies of 40%. Accuracies of genomic EBVs needed to approach 60% for the genomic EBV to be the most important contributor to gains in the combinations of measures studied.

Genetic relationships between steer performance and female reproduction and possible impacts on whole herd productivity in two tropical beef genotypes

Steer growth and carcass composition, and female reproductive performance have been identified as key aspects of productivity by breeders of tropically adapted beef cattle in Australia. Research has also demonstrated that traits describing meat quality and feed intake and efficiency are of economic importance to Australia’s beef industry. The present study aimed to determine genetic relationships of traits describing steer growth, feed intake and efficiency, carcass composition and meat quality with female reproductive performance in two genotypes of tropically adapted beef cattle. Female reproduction traits describing outcomes of first (Mating 1) and second (Mating 2) annual matings and lifetime reproduction (averaged over 6 matings) were analysed for 1020 Brahman (BRAH) and 1117 Tropical Composite (TCOMP) females. Steer traits were available for 1007 BRAH and 1210 TCOMP half-sibs of the females evaluated for reproductive performance, and measurements of liveweight and body composition for 1025 BRAH and 1520 TCOMP bull progeny of the same females were included in the analysis. Results demonstrated that selection to increase steer carcass weight and eye muscle area and decrease carcass fat depth would have no significant unfavourable impact on female reproductive performance for both genotypes. Measures of liveweight, eye muscle area and P8 fat depth in young BRAH bulls, however, were only moderately correlated with steer carcass equivalents (rg = 0.28 to 0.55) and results showed that selection on the basis of bull measurements alone may negatively affect female lifetime annual calving rate (rg = –0.44 to –0.75) if both were not included in a multi-trait genetic evaluation and considered when making selection decisions. More favourable (lower) net feed intake in BRAH steers was genetically associated with lower Mating 1 weaning rate (rg = 0.76) and higher days to calving (rg = –0.50), although this did not significantly affect lifetime annual calving or weaning rate (rg = 0.10 and 0.29, respectively). For TCOMP, higher steer carcass P8 fat depth was unfavourably genetically associated with female Mating 2 weaning rate (rg = –0.76), although these relationships were not as strong for weaning rate at Mating 1 or when averaged over the animals lifetime (rg = 0.43 and –0.13, respectively). Lower (more favourable) shear force (a measure of tenderness) also displayed a significant genetic association with higher (less favourable) Mating 1 days to calving in TCOMP and, while standard errors were high, tended to be unfavourably associated with other measures of female reproduction evaluated for the present study. Steer growth, carcass composition, meat quality and residual feed intake and female reproduction could be improved simultaneously if measurements describing both are included in a multi-trait genetic evaluation. Results of the present study also showed that expanding female reproduction traits to include descriptors of first and second mating outcomes, as well as lifetime reproductive performance, would allow a fuller account to be taken of genetic relationships of male traits with female reproduction.

Achieving adoption and innovation in Australia's beef industry

Beef CRC uses industry value-add and impact as the guiding principle to identify the most appropriate ‘Path to Adoption’ for each one of the practices, tools and technologies it develops. This approach recognises that, regardless of the product type or the method of commercialisation, all Beef CRC’s decisions aimed at achieving commercialisation, utilisation, and/or adoption are designed to achieve and demonstrate maximum value for Australian beef businesses. This is achieved by customising commercialisation approaches to ensure that (1) all Beef CRC technologies are specifically designed to maximise industry adoption and utilisation and (2) all Beef CRC processes aiming to achieve industry adoption and innovation are specifically designed and implemented for that purpose. This paper presents case studies outlining the different approaches used by Beef CRC to maximise adoption, innovation and impact of different product types and different processes (or ‘delivery vehicles’) to achieve demonstrable adoption and impact of complex knowledge-based technologies among the tens of thousands of small-to-medium beef enterprises located throughout Australia.

Brahman and Brahman crossbred cattle grown on pasture and in feedlots in subtropical and temperate Australia. 2. Meat quality and palatability

Market demand for a reliable supply of beef of consistently high eating quality led the Cooperative Research Centre for Cattle and Beef Industry (Meat Quality) to initiate a crossbreeding progeny test program to quantify objective and sensory meat quality differences between straightbred and first-cross Brahman cattle. Brahman, Belmont Red, Santa Gertrudis, Angus, Hereford, Shorthorn, Charolais and Limousin sires were mated to Brahman females over 3 years to produce 1346 steers and heifers in subtropical northern Australia. Calves were assigned within sire by age and weight to one of three market endpoints (domestic, Korean or Japanese), one of two finishing environments (subtropical or temperate) and one of two finishing diets (pasture or feedlot). Average carcass weights were 227, 288 and 327 kg for domestic, Korean and Japanese markets respectively. Only steers were finished for the Japanese market. The effects of sire breed, finishing regime, market endpoint and sex on sensory meat quality of four attributes score (CMQ4), ossification score and Warner-Bratzler shear force (SF), instron compression (IC), ultimate pH and percent cooking loss (CL) on the M. longissimus thoracis et lumborum (LT) and M. semitendinosus (ST) were determined. Straightbred Brahmans had the highest SFLT (5.39 ± 0.07; P < 0.001), ICLT (1.89 ± 0.02; P < 0.05) and CL in both muscles (P < 0.05). Straightbred Brahmans were the only genotype that failed to meet minimum CMQ4 grading standards (38.3; P < 0.001). Progeny with up to 75% Brahman content successfully met minimum objective and sensory meat quality consumer thresholds for tenderness (IC <2.2 kg, SF <5.0 kg; CMQ4 >46.5). There was little difference between crossbred progeny for most meat quality traits. All feedlot-finished animals were slaughtered at domestic, Korean and Japanese market weights by 24 months of age, with minimal differences in objective measures of meat quality between markets. The IC measures for all sire breeds were below 2.2 kg, indicating connective tissue toughness was not an important market consideration in feedlot-finished animals slaughtered by 24 months of age. Pasture finishing adversely affected all meat quality traits (P < 0.001) except CLST, with Korean and Japanese market animals having unacceptably tough SF, IC and CMQ4 measures. This was attributed to their older age at slaughter (31 and 36 months respectively), resulting from their seasonally interrupted growth path. While domestic animals slaughtered at 25 months of age off pasture had unacceptably high SF and IC, CMQ4 was acceptable. Subtropical feedlot animals had slightly more desirable (n.s.) SF and IC relative to temperate feedlot animals, whereas temperate feedlot animals had higher CMQ4 (P < 0.001). Genotype × environment interactions were not important.

Genetics of steer daily and residual feed intake in two tropical beef genotypes, and relationships among intake, body composition, growth and other post-weaning measures

Genetic parameters for Brahman (BRAH) and Tropical Composite (TCOMP) cattle were estimated for steer production traits recorded at weaning (WEAN), 80 days post-weaning (POSTW), feedlot entry (ENTRY) and after ∼120 days feedlot finishing (EXIT). The TCOMP was 50% Bos indicus, African Sanga or other tropically adapted Bos taurus, and 50% non-tropically adapted Bos taurus. Data involved 2216 steers, comprising 1007 BRAH by 53 sires and 1209 TCOMP by 50 sires. Individual daily feed intake (DFI) and residual feed intake (RFI) were assessed on 680 BRAH and 783 TCOMP steers over an ~70-day feedlot test. Other traits were liveweight (LWT), average daily gain (ADG), ultrasonically scanned rump (SP8) fat depth, rib (SRIB) fat depth, M. longissimus area (SEMA) and intra-muscular fat % (SIMF), body condition score (CS), hip height (HH), flight time (FT) and serum insulin-like growth factor-I concentration (IGF-I). BRAH were significantly (P < 0.05) lighter at ENTRY and EXIT, and had lower DFI (10.8 v. 13.2 kg/day) and RFI (–0.30 v. 0.17 kg/day), greater SP8 (5.8 v. 5.1 mm) but similar SRIB at ENTRY, lower SRIB (8.2 v. 8.9 mm) but similar SP8 at EXIT, and greater HH than TCOMP. Heritabilities for DFI, RFI, LWT, ADG, scanned body composition, HH and IGF-I measures, across measurement times, were generally in the 20 to 60% range for both genotypes. Genetic variance for RFI was 0.19 (kg/day)2 in BRAH and 0.41 (kg/day)2 in TCOMP, suggesting a clear potential to genetically change RFI in both genotypes. Trait variances and genetic correlations often differed between the genotypes, supporting the use of genotype-specific parameters in genetic evaluation. The genotype differences may be associated with evolutionary changes that have occurred in B. indicus as a part of their adaptation to tropical environments. Measures with potential to be used as genetic indicators of DFI were LWT measures in BRAH and TCOMP, ADG at ENTRY in TCOMP, and SP8 and SIMF at ENTRY in BRAH. Measures with potential to be genetic indicators of RFI were HH and ADG at ENTRY in BRAH, and IGF-I in both genotypes. Taller and faster-growing BRAH steers at ENTRY had genetically lower RFI. IGF-I was negatively genetically correlated with RFI whether IGF-I was measured at POSTW, ENTRY or EXIT. SRIB fatness at EXIT was strongly positively genetically correlated with RFI in TCOMP but only lowly correlated in BRAH. Fatness at ENTRY was lowly and negatively genetically correlated with RFI. The results emphasise the need for a population-specific understanding of trait relationships and of trait differences between measurement times if genetic indicator traits are to be utilised in genetic evaluation of RFI.

Genetics of heifer puberty in two tropical beef genotypes in northern Australia and associations with heifer- and steer-production traits

A total of 2115 heifers from two tropical genotypes (1007 Brahman and 1108 Tropical Composite) raised in four locations in northern Australia were ovarian-scanned every 4–6 weeks to determine the age at the first-observed corpus luteum (CL) and this was used to define the age at puberty for each heifer. Other traits recorded at each time of ovarian scanning were liveweight, fat depths and body condition score. Reproductive tract size was measured close to the start of the first joining period. Results showed significant effects of location and birth month on the age at first CL and associated puberty traits. Genotypes did not differ significantly for the age or weight at first CL; however, Brahman were fatter at first CL and had a small reproductive tract size compared with that of Tropical Composite. Genetic analyses estimated the age at first CL to be moderately to highly heritable for Brahman (0.57) and Tropical Composite (0.52). The associated traits were also moderately heritable, except for reproductive tract size in Brahmans (0.03) and for Tropical Composite, the presence of an observed CL on the scanning day closest to the start of joining (0.07). Genetic correlations among puberty traits were mostly moderate to high and generally larger in magnitude for Brahman than for Tropical Composite. Genetic correlations between the age at CL and heifer- and steer-production traits showed important genotype differences. For Tropical Composite, the age at CL was negatively correlated with the heifer growth rate in their first postweaning wet season (–0.40) and carcass marbling score (–0.49), but was positively correlated with carcass P8 fat depth (0.43). For Brahman, the age at CL was moderately negatively genetically correlated with heifer measures of bodyweight, fatness, body condition score and IGF-I, in both their first postweaning wet and second dry seasons, but was positively correlated with the dry-season growth rate. For Brahman, genetic correlations between the age at CL and steer traits showed possible antagonisms with feedlot residual feed intake (–0.60) and meat colour (0.73). Selection can be used to change the heifer age at puberty in both genotypes, with few major antagonisms with steer- and heifer-production traits.

Genetics of meat quality and carcass traits and the impact of tenderstretching in two tropical beef genotypes

Meat quality and carcass traits were measured for 2180 feedlot finished Brahman (BRAH) and Tropical Composite (TCOMP) steers to investigate genetic and non-genetic influences on shear force, and other meat quality traits. Genetic and phenotypic correlations were estimated between carcass and meat quality traits, and with live animal measurements collected in steers from weaning to feedlot exit, and their heifer half-sibs up to their first mating, which were managed in Australia’s tropical or subtropical environments. Left sides of carcasses were tenderstretched (hung by the aitch-bone) while right sides were conventionally hung (by the Achilles tendon). Tenderstretching reduced mean shear force by 1.04 kg, and phenotypic variance by 77% of that observed in conventionally hung sides. Genotype differences existed for carcass traits, with TCOMP carcasses significantly heavier, fatter, with greater eye muscle area, and lower retail beef yield than BRAH. TCOMP had lower shear force, and higher percent intramuscular fat. Meat quality and carcass traits were moderately heritable, with estimates for shear force and compression of 0.33 and 0.19 for BRAH and 0.32 and 0.20 for TCOMP respectively. In both genotypes, estimates of heritability for carcass traits (carcass weight, P8 and rib fat depths, eye muscle area and retail beef yield) were consistently moderate to high (0.21 to 0.56). Shear force and compression were genetically correlated with percent intramuscular fat (r g = –0.26 and –0.57, respectively), and meat colour (r g = –0.41 and –0.68, respectively). For TCOMP, lower shear force was genetically related to decreased carcass P8 fat depth (r g = 0.51). For BRAH steers and heifers measured at pasture, fatness traits and growth rates were genetically correlated with shear force, although the magnitude of these relationships varied with time of measurement. Net feed intake was significantly genetically correlated with carcass rib fat depth (r g = 0.49), eye muscle area (r g = –0.42) and retail beef yield (r g = –0.61). These results demonstrate that selection to improve production and carcass traits can impact meat quality traits in tropically adapted cattle, and that genotype specific evaluations will be necessary to accommodate different genetic relationships between meat quality, carcass and live animal traits.

Brahman and Brahman crossbred cattle grown on pasture and in feedlots in subtropical and temperate Australia. 1. Carcass quality

Brahmans are known to have poorer carcass quality relative to Bos taurus breeds and crossbreds under temperate environments; however, little is known of their performance in subtropical environments. The Cooperative Research Centre for Cattle and Beef Industry (Meat Quality) initiated a crossbred progeny test experiment to compare straightbred Brahmans with Brahman crossbreds finished on pasture and grain, in subtropical and temperate environments, to carcass quality specifications of Australian domestic and export markets. Brahman, Belmont Red, Santa Gertrudis, Angus, Hereford, Shorthorn, Charolais and Limousin sires were mated to Brahman females in subtropical Queensland over 3 years to produce 1750 progeny. At a common age at slaughter, Charolais crossbreds had the highest hot carcass weight (CWT) but were not significantly heavier than Limousin or British crossbred progeny. At common carcass weights, breeds within breed type (British, Continental, tropically adapted) performed similarly. British and Santa Gertrudis crossbreds had the fattest carcasses and lowest yields. British and Belmont Red crossbreds had the highest intramuscular fat percentage (IMF). Continental crossbreds had the highest retail beef yield (RBY), kilograms of retail primals (RTPM) and percent retail primals (pcRTPM) and leanest carcasses. Brahmans had the lowest CWT, intermediate subcutaneous fat cover, high yields and low IMF. Animals finished in the subtropics on pasture were significantly older, leaner and had higher RBY, RTPM and pcRTPM than subtropical feedlot-finished contemporaries. Temperate feedlot animals had significantly more IMF, less subcutaneous fat at the P8 site and slightly lower yields than subtropical feedlot contemporaries, indicating possible effects of postweaning growth path on fat distribution. Belmont Red crossbreds demonstrated the advantages of adaptation with the highest IMF in both subtropical finishing regimes, while Angus progeny had the highest IMF in the temperate feedlot environment and highest IMF overall when analysed across finishing regimes. Significant interactions were mainly the result of scale effects rather than breed re-ranking for carcass traits across markets and finishing regimes. Therefore, breeds that performed well for certain carcass traits in subtropical environments performed consistently for those traits in temperate environments relative to other sire breeds, regardless of market endpoint or finishing nutrition.

Erratum to: Genetics of heifer performance in 'wet' and 'dry' seasons and their relationships with steer performance in two tropical beef genotypes

The genetics of heifer performance in tropical 'wet' and 'dry' seasons, and relationships with steer performance, were studied in Brahman (BRAH) and Tropical Composite (TCOMP) (50% Bos indicus, African Sanga or other tropically adapted Bos taurus; 50% non-tropically adapted Bos taurus) cattle of northern Australia. Data were from 2159 heifers (1027 BRAH, 1132 TCOMP), representing 54 BRAH and 51 TCOMP sires. Heifers were assessed after post-weaning 'wet' (ENDWET) and 'dry' (ENDDRY) seasons. Steers were assessed post-weaning, at feedlot entry, over a 70-day feed test, and after ~120-day finishing. Measures studied in both heifers and steers were liveweight (LWT), scanned rump fat, rib fat and M. longissimus area (SEMA), body condition score (CS), hip height (HH), serum insulin-like growth factor-I concentration (IGF-I), and average daily gains (ADG). Additional steer measures were scanned intra-muscular fat %, flight time, and daily (DFI) and residual feed intake (RFI). Uni- and bivariate analyses were conducted for combined genotypes and for individual genotypes. Genotype means were predicted for a subset of data involving 34 BRAH and 26 TCOMP sires. A meta-analysis of genetic correlation estimates examined how these were related to the difference between measurement environments for specific traits. There were genotype differences at the level of means, variances and genetic correlations. BRAH heifers were significantly (P < 0.05) faster-growing in the 'wet' season, slower-growing in the 'dry' season, lighter at ENDDRY, and taller and fatter with greater CS and IGF-I at both ENDWET and ENDDRY. Heritabilities were generally in the 20 to 60% range for both genotypes. Phenotypic and genetic variances, and genetic correlations, were commonly lower for BRAH. Differences were often explained by the long period of tropical adaptation of B. indicus. Genetic correlations were high between corresponding measures at ENDWET and ENDDRY, positive between fat and muscle measures in TCOMP but negative in BRAH (mean of 13 estimates 0.50 and ᾰ0.19, respectively), and approximately zero between steer feedlot ADG and heifer ADG in BRAH. Numerous genetic correlations between heifers and steers differed substantially from unity, especially in BRAH, suggesting there may be scope to select differently in the sexes where that would aid the differing roles of heifers and steers in production. Genetic correlations declined as measurement environments became more different, the rates of decline (environment sensitivity) sometimes differing with genotype. Similar measures (LWT, HH and ADG; IGF-I at ENDWET in TCOMP) were genetically correlated with steer DFI in heifers as in steers. Heifer SEMA was genetically correlated with steer feedlot RFI in BRAH (0.75 ± 0.27 at ENDWET, 0.66 ± 0.24 at ENDDRY). Selection to reduce steer RFI would reduce SEMA in BRAH heifers but otherwise have only small effects on heifers before their first joining.

Brahman and Brahman crossbred cattle grown on pasture and in feedlots in subtropical and temperate Australia. 3. Feed efficiency and feeding behaviour of feedlot-finished animals

The objective of this experiment was to quantify differences in feed efficiency and feeding behaviour of 470 heifers and steers by Brahman, Belmont Red, Santa Gertrudis, Angus, Hereford, Shorthorn, Charolais and Limousin sires mated to Brahman dams. Animals were bred in subtropical Queensland and finished in a temperate New South Wales feedlot. Animals averaged 598 days of age and 425.8 kg at the start of the feed intake test period. Sire breeds did not differ for eating rate, feed conversion ratio or relative growth rate. Generally, higher daily feed intakes (DFI) corresponded with higher average daily gains (ADG). Straightbred Brahmans fed the most frequently (16.6 ± 0.8 sessions/day; P < 0.05) but spent the least time eating of all breeds (67.4 ± 2.7 min/day; P < 0.001). Least squares means for Brahman, Belmont Red, Santa Gertrudis, Angus, Hereford, Shorthorn, Charolais and Limousin sired progeny, respectively, for residual feed intake (RFI; P < 0.05) were 0.02 ± 0.16, 0.14 ± 0.13, –0.10 ± 0.23, 0.54 ± 0.17, –0.27 ± 0.18, 0.29 ± 0.18, –0.46 ± 0.16 and –0.21 ± 0.13 kg/day, and for ADG (P < 0.001) were 1.06 ± 0.05, 1.17 ± 0.04, 1.52 ± 0.08, 1.47 ± 0.06, 1.46 ± 0.06, 1.46 ± 0.06, 1.35 ± 0.06 and 1.38 ± 0.05 kg/day. While straightbred Brahmans did not differ from all other sire breeds for RFI, their lower appetite relative to crossbred contemporaries resulted in the lowest DFI (P < 0.001) and lowest ADG (P < 0.001) overall. Angus sired crosses were the least efficient feeders and spent the most time eating, consumed the most feed and had the highest RFI, but were not significantly different to Santa Gertrudis and Shorthorn crosses for these traits. Angus sired crosses spent 24.1 and 15.4 min/day more time eating (P < 0.001) than straightbred Brahmans and Charolais crosses, and consumed 35 and 13% more feed (P < 0.001) respectively. Charolais sired crosses were the most feed efficient with the lowest RFI and intermediate DFI, and did not differ significantly from the highest ranking sire breeds for ADG or Kleiber ratio. While Belmont Red crosses did not differ from all breeds for RFI, they had significantly lower DFI than British and Santa Gertrudis crosses resulting in lower ADG (P < 0.001) relative to these sire breeds. Therefore, selection of Charolais, Hereford, Limousin and Santa Gertrudis sire breeds would result in the most feed efficient (low RFI) crosses with Brahman without any sacrifice in ADG.

Genetics of adaptive traits in heifers and their relationship to growth, pubertal and carcass traits in two tropical beef cattle genotypes

Genetic analyses of tropical adaptive traits were conducted for two tropically adapted genotypes, Brahman (BRAH) and Tropical Composite (TCOMP). Traits included tick scores (TICK), faecal egg counts (EPG), buffalo fly-lesion scores (FLY), rectal temperatures under hot conditions (TEMP), coat scores (COAT), coat colour on a light to dark scale (COLOUR), navel scores (NAVEL) and temperament measured as flight time (FT). The data comprised adaptive measures recorded at specific times on 2071 heifers comprising 966 BRAH and 1105 TCOMP. The genetic correlations of these adaptive traits with heifer growth, scanned carcass, pubertal measures and steer growth and carcass traits were estimated. BRAH recorded significantly (P < 0.05) lower TICK, EPG, FLY and TEMP than did TCOMP. BRAH also had significantly sleeker coats, lighter coat colour, more pendulous navels and more docile temperament than did TCOMP. The heritability of TICK and FLY was low (<20%), that of EPG, TEMP, NAVEL and FT was moderate (20–50%) and that of COAT and COLOUR high (>50%). In general, phenotypic correlations between these adaptive traits were low and genetic correlations were non-significant, implying trait independence. Genetic correlations between EPG and weight traits (0.29 to 0.44) indicated a positive relationship, implying no deleterious effect of worms on the growth at a genetic level, especially in TCOMP. The negative genetic correlations between COAT and body-condition score across genotypes (–0.33 to –0.48) indicated genetic advantage of sleek coats in tropics. A positive genetic correlation between COAT and the age at the first-observed corpus luteum (0.73) in BRAH indicated that BRAH with sleeker coats were genetically early maturing. Further, sleeker coats were genetically indicative of lower weights and lower fat cover at puberty in BRAH. The scanned fat measures at rump and rib sites for feedlot steers showed strong genetic correlation (0.50–0.58) with heifer TEMP, indicating genetically fatter animals had genetically lower heat tolerance. In BRAH, a positive genetic association between heifer COLOUR and scanned fat measures in steers (0.50–0.54) implied increased fatness in genetically darker animals. Further, in BRAH, a strong negative genetic correlation (–0.97) was observed between steer retail beef yield and heifer TEMP, indicating a favourable genetic association. In general, genetic correlations between adaptive traits and other economic traits were genotype specific. Further, it can be concluded that selection for productive and pubertal traits in tropical beef cattle genotypes would not adversely affect their tropical adaptability.

Genetics of heifer performance in 'wet' and 'dry' seasons and their relationships with steer performance in two tropical beef genotypes

The genetics of heifer performance in tropical ‘wet’ and ‘dry’ seasons, and relationships with steer performance, were studied in Brahman (BRAH) and Tropical Composite (TCOMP) (50% Bos indicus, African Sanga or other tropically adapted Bos taurus; 50% non-tropically adapted Bos taurus) cattle of northern Australia. Data were from 2159 heifers (1027 BRAH, 1132 TCOMP), representing 54 BRAH and 51 TCOMP sires. Heifers were assessed after post-weaning ‘wet’ (ENDWET) and ‘dry’ (ENDDRY) seasons. Steers were assessed post-weaning, at feedlot entry, over a 70-day feed test, and after ∼120-day finishing. Measures studied in both heifers and steers were liveweight (LWT), scanned rump fat, rib fat and M. longissimus area (SEMA), body condition score (CS), hip height (HH), serum insulin-like growth factor-I concentration (IGF-I), and average daily gains (ADG). Additional steer measures were scanned intra-muscular fat %, flight time, and daily (DFI) and residual feed intake (RFI). Uni- and bivariate analyses were conducted for combined genotypes and for individual genotypes. Genotype means were predicted for a subset of data involving 34 BRAH and 26 TCOMP sires. A meta-analysis of genetic correlation estimates examined how these were related to the difference between measurement environments for specific traits. There were genotype differences at the level of means, variances and genetic correlations. BRAH heifers were significantly (P < 0.05) faster-growing in the ‘wet’ season, slower-growing in the ‘dry’ season, lighter at ENDDRY, and taller and fatter with greater CS and IGF-I at both ENDWET and ENDDRY. Heritabilities were generally in the 20 to 60% range for both genotypes. Phenotypic and genetic variances, and genetic correlations, were commonly lower for BRAH. Differences were often explained by the long period of tropical adaptation of B. indicus. Genetic correlations were high between corresponding measures at ENDWET and ENDDRY, positive between fat and muscle measures in TCOMP but negative in BRAH (mean of 13 estimates 0.50 and –0.19, respectively), and approximately zero between steer feedlot ADG and heifer ADG in BRAH. Numerous genetic correlations between heifers and steers differed substantially from unity, especially in BRAH, suggesting there may be scope to select differently in the sexes where that would aid the differing roles of heifers and steers in production. Genetic correlations declined as measurement environments became more different, the rates of decline (environment sensitivity) sometimes differing with genotype. Similar measures (LWT, HH and ADG; IGF-I at ENDWET in TCOMP) were genetically correlated with steer DFI in heifers as in steers. Heifer SEMA was genetically correlated with steer feedlot RFI in BRAH (0.75 ± 0.27 at ENDWET, 0.66 ± 0.24 at ENDDRY). Selection to reduce steer RFI would reduce SEMA in BRAH heifers but otherwise have only small effects on heifers before their first joining.

Glucocorticoid binding and cytolethal responsiveness of hairy-cell and chronic lymphocytic leukaemia

The glucocorticoid binding properties and cytolethal responsiveness of leukaemic cells were studied in vitro in seven patients with hairy-cell leukaemia (HCL) and five with chronic lymphocytic leukaemia (CLL). Substantial levels of glucocorticoid binding were detected both in whole cell and cytosol preparations from all patients although the level of binding by HCL cells always exceeded that of CLL cells (P less than 0.05). In both leukaemic cell types the uptake and binding of prednisolone in vitro was significantly greater than that of dexamethasone (P less than 0.05). CLL cells showed a variable dose-related cytolethal response to methylprednisolone sodium succinate (MPSS) treatment in vitro although cytolytic effects were not marked in the usual pharmacological dose range (10(-5)-10(-6)M). Treatment of CLL patients with conventional doses of prednisone for extended periods or high intravenous infusions of MPSS over shorter periods had no consistent effect on the in-vitro level of steroid binding or the cytolethal responsiveness of CLL cells to glucocorticoid treatment. Although HCL cells proved highly resistant to the cytolethal effects of MPSS in vitro, the substantial binding of glucocorticoids by leukaemic cells from all HCL patients indicates the potential value of steroid therapy in this disease should be explored further.

Growth performance, feed efficiency and carcass and meat quality of tropically adapted breed types from different farming systems in South Africa

Two experiments measured the ability of tropically adapted beef breeds from resource-poor farmer herds in South Africa to produce high quality beef under commercial feedlot conditions. The resource-poor farming sector consists of ‘emerging’ and communal farmers. The herd and breed groups consisted of Sanga types (tropically adapted Bos taurus breed) including Nguni, Tuli, Bonsmara and Drakensberger, as well as Brahman and non-descript groups. The cattle were slaughtered after an average of 97 days in the first experiment and after an average of 92, 140 and 169 days on a grain-based diet in the second experiment. Growth performance, carcass quality and yield, occurrence of disease and meat quality were measured. The performance of the breeds groups was a function of their genetic potential and herd type (carcass weight and condition at arrival). Steers from emerging and communal farmer herds enter the feedlot at a lighter weight, but show similar growth performance to achieve acceptable, albeit lighter carcass weights, than their commercial counterparts. The incidence of disease was no different between commercial, emerging and communal herds. Carcass and meat quality analyses indicate small or no differences between herd types or breeds, except that Brahman produced tougher meat. It was concluded that cattle from resource-poor farmer herds have the ability to meet the specifications of South Africa’s commercial beef markets, indicating a genuine opportunity for import substitution, whereby the more than 5 million cattle in resource-poor farmer herds could be used to overcome the significant shortfall in South Africa’s domestic beef market demand.

Effect of repeated implants of oestradiol-17β on beef palatability in Brahman and Braham cross steers finished to different market end points

The effect of repeated implantation with 20 mg oestradiol-17β (Compudose 100) on carcass and meat quality traits was investigated using 478 Bos indicus and B. indicus × Bos taurus cross steers finished on either pasture or grain to achieve carcass weight for one of three market end points (domestic, 220 kg; Korean, 280 kg; or Japanese, 340 kg). In the oestradiol-17β treatment group, animals were administered implants at ~100-day intervals, with the number of implants administered to any steer ranging from one to eight. Cattle were slaughtered and at boning the anterior portion of the M. longissimus lumborum was removed and frozen after aging for 1 day for later objective meat quality measurements (shear force, compression and cook loss %). The adjoining portion was aged for 14 days before consumer sensory testing using the Meat Standards Australia protocols. Each sample was scored for tenderness, juiciness, like flavour and overall liking by 10 untrained consumers. Implanting increased carcass weights and ossification scores (P < 0.05) and reduced marbling scores in comparison to non-implanted carcasses. For tenderness, like flavour, overall liking and MQ4 scores there was a significant (P < 0.05) interaction between B. indicus content and oestradiol-17β treatment, whereby high B. indicus content cattle that were implanted with oestradiol-17β had the lowest sensory scores. The number of implants administered did not affect carcass weights or marbling scores, whereas ossification scores increased in carcasses as the number of implants increased. The number of implants administered had no effect (P > 0.05) on sensory scores, or objective meat tenderness.

Evaluation of Bonsmara and Belmont Red cattle breeds in South Africa. 1. Productive performance

The productive performance of progeny by Bonsmara and Belmont Red sires was compared in contemporarily reared groups in South Africa. Measurements on 4279 pedigreed progeny of 96 Bonsmara sires and 18 Belmont Red sires were recorded over 15 years in 4 diverse climatic regions of South Africa. Growth traits were measured on growing stock from birth to 18 months at pasture. Weight gain, feed conversion rate, frame size, scrotal circumference and visually assessed ‘functional efficiency’ scores were recorded on male progeny fed high protein rations. Carcass traits were measured on a subset of the male progeny. Age at first calving, and repeated measurements of calving date and calving interval were recorded on breeding females as indicators of reproductive performance. Tick counts were made on males and females across a range of ages during times of heavy field infestation. There were differences in progeny performance for some traits. Bonsmara sired animals generally scored higher than Belmont Red progeny for functional efficiency. Belmont Red sired calves were lighter at birth (35.9 v. 37.3; P0.05) and cows by Belmont Red sires had a shorter average calving interval (440 v. 455; P<0.05). Sire breed by region interaction was not important. The differences in scored and measured traits generally reflected differences in selection policies adopted by the breed societies. Variation in growth and fertility traits due to sire was greater than variation due to breed and demonstrated the potential for identifying superior individuals. The performance of the sire breeds for the range of traits and environments studied advocated that selected Bonsmara and Belmont Red animals from South African herds would be suitable for inclusion in breeding programs in Australian Belmont Red herds.

Evaluation of Bonsmara and Belmont Red cattle breeds in South Africa. 2. Genetic parameters for growth and fertility

Genetic parameters were estimated for growth and fertility indicator traits in a South African beef cattle population. Measurements on 5601 pedigreed progeny of 96 Bonsmara sires, 18 Belmont Red sires and 20 Bonsmara × Belmont Red cross sires were recorded over 19 years in 4 diverse climatic regions of South Africa. Growth traits were measured on growing stock from birth to 18 months at pasture. Cow weights were measured at calving and weaning. Age at first calving, and repeated measurements of calving day and calving interval were recorded on 1993 breeding females as indicators of reproductive performance. The traits were analysed using univariate and bivariate animal models with maternal effects fitted. Direct heritability of growth traits (0.11–0.42) and female fertility traits (0.02–0.13) suggested that genetic progress could be made by selection for some traits. Genetic correlations between growth and fertility traits were variable (–0.47–0.85) and indicated that multi-trait selection would be the best method of dealing with multidirectional forces on productivity traits. Genetic correlations between direct and maternal effects on liveweight traits were mostly negative indicating that genetic improvement of traits with strong maternal influence, such as weaning weight, would be complicated and supported the use of post-weaning weights with less maternal influence as selection criteria to improve the direct additive component of growth. The genetic parameter estimates provide useful reference values for estimation of breeding values in a proposed combined-breed genetic evaluation program.

Genetics research in the Cooperative Research Centre for Cattle and Beef Quality

In its first 7-year term, the Cooperative Research Centre (CRC) for the Cattle and Beef Industry (Meat Quality) identified the genetic and non-genetic factors that impacted on beef eating quality. Following this, the CRC for Cattle and Beef Quality was established in 1999 to identify the consequences of improving beef eating quality and feed efficiency by genetic and non-genetic means on traits other than carcass and beef quality. The new CRC also had the responsibility to incorporate results from the first Beef CRC in national schemes such as BREEDPLAN (Australia’s beef genetic evaluation scheme) and Meat Standards Australia (Australia’s unique meat grading scheme that guarantees the eating quality of beef). This paper describes the integrated research programs and their results involving molecular and quantitative genetics, meat science, growth and nutrition and industry economics in the Beef CRC’s second phase (1999–2006) and the rationale for the individual genetics programs established. It summarises the planned scientific and beef industry outcomes from each of these programs and also describes the development and/or refinement by CRC scientists of novel technologies targeting increased genetic gains through enhanced measurement and recording in beef industry herds, thereby ensuring industry use of CRC results.

Genetic and phenotypic characterisation of animal, carcass, and meat quality traits from temperate and tropically adapted beef breeds

A total of 7622 cattle were measured for several weight and body composition traits in temperate and tropically adapted breeds. Traits included: liveweight, hip height, body fat score, muscle score, flight time, ultrasound scanned fatness, and eye muscle area. Measurements were taken at 3 stages during the project: post-weaning, start of finishing, and end of finishing (i.e. pre-slaughter). Animals were finished to 3 target market-weight end-points (220, 280, or 340 kg carcass weight), either on pasture or in a feedlot, and in 2 different geographic regions for tropically adapted breeds. These data were used to estimate genetic parameters for the traits at each stage, and also to estimate the effect of market weight and finishing regimes on the phenotypic and genetic expression of each trait measured at the end of finishing stage. Results showed, for all traits, that the magnitude of the phenotypic expression increased across the stages and market-weight end-points for the end of finishing measures. Feedlot finishing decreased the age at slaughter, and increased fatness and muscling compared with pasture-finished animals. Heritabilities ranged from 0.13 to 0.58, with subjectively scored traits generally being lower than objectively measured traits. Additive genetic variances generally increased with stage of measurement, and with increasing market weight. Genetic correlations of the same measure across stages or market weights were all close to unity. Additive genetic variances of the various traits were similar for feedlot versus pasture finish groups, and the genetic correlation between each measure for feedlot and pasture finish was generally greater than 0.80. The effect of finishing geographic region (i.e. temperate versus subtropical environments) for the tropically adapted breeds had little effect on the size of the additive genetic variances or genetic correlations between traits across geographic regions.The results imply that changing the production system had a significant impact on the phenotypic expression of growth and body composition traits but little effect on the underlying genetic expression and subsequent ranking of sires (i.e. no evidence of genotype by production environment interactions). Therefore, these live animal measures could be used as selection criteria in genetic evaluation programs and may also be genetically correlated with abattoir carcass and meat quality traits.

Genetic and phenotypic characterisation of animal, carcass, and meat quality traits from temperate and tropically adapted beef breeds. 4. Correlations among animal, carcass, and meat quality traits

Beef cattle data from temperate (TEMP, n = 3947) and tropically (TROP, n = 4137) adapted breeds were analysed to compute estimates of genetic and phenotypic correlations between animal, abattoir carcass, and meat quality measures. Live animal traits included: liveweight (S2LWT), scanned subcutaneous rump fat depth (S2P8), scanned eye muscle area (S2EMA), flight time (S1FT), and finishing average daily gain (FADG). Carcass traits included: hot carcass weight (CWT), retail beef yield percentage (RBY), intramuscular fat percentage (IMF), subcutaneous rump fat depth (P8), eye muscle length by width (ELW), and meat colour score (MEATC). Meat quality measures taken on 2 muscles [M. longissimus thoracis et lumborum (LTL) and M. semitendinosus (ST)] included: shear force of LTL (LTL_SF) and ST (ST_SF); compression of the ST (ST_C); cooking loss % of the LTL (LTL_CL%) and ST (ST_CL%); Minolta LTL L* (LTL_L*), a* (LTL_a*), ST a* (ST_a*); and consumer-assessed LTL tenderness score (LTL_TEND). Genetic and phenotypic correlations between animal measures and related carcass traits were moderate to very high for TEMP and TROP. Genetic correlations between S2LWT and CWT were 0.89 and 0.82, between S2P8 and P8 0.80 and 0.88, and between S2EMA and ELW 0.62 and 0.68, for TEMP and TROP, respectively. Genetic correlations between animal measures and other carcass traits varied; moderate genetic correlations were estimated between S2P8 and RBY (–0.57, –0.19 for TEMP, TROP) and S2P8 and IMF (0.39, 0.23 for TEMP, TROP). Genetic correlations between animal and meat quality measures were moderate to low. For TEMP, moderate genetic correlations were estimated between S2P8 and LTL_TEND (0.38), FADG and ST_a* (–0.49), and FADG and LTL_TEND (0.45); and for TROP, S1FT and LTL_SF (–0.54), and S2EMA and LTL_L* (–0.46). Phenotypic correlations between animal and meat quality were generally low and close to zero. Several moderate to high genetic correlations existed between carcass and meat quality traits. In general, fatness measures were genetically correlated with tenderness (e.g. IMF and LTL_TEND 0.61, 0.31 for TEMP, TROP). CWT was genetically correlated with meat colour (CWT and LTL_L* 0.66, 0.60 for TEMP, TROP) and objective tenderness measures (CWT and ST_C –0.52, –0.22 for TEMP, TROP). Once again phenotypic correlations between carcass and meat quality were low, indicating that few phenotypic predictors of meat quality traits were identified. Several of the genetic correlations show that both animal and abattoir carcass traits may be of use as indirect measures for carcass and meat quality traits in multiple trait genetic evaluation systems.

Genetic and phenotypic characterisation of animal, carcass, and meat quality traits from temperate and tropically adapted beef breeds. 2. Abattoir carcass traits

A total of 11 abattoir carcass measures were recorded on 7854 carcasses in temperate (TEMP) and tropically adapted (TROP) beef breeds. Breeds for TEMP included Angus, Hereford, Murray Grey, and Shorthorn; Brahman, Belmont Red, and Santa Gertrudis accounted for TROP breeds. Measurements included carcass weight (CWT), retail beef yield percentage (RBY), intramuscular fat percentage (IMF), subcutaneous fat depth at the P8 site (P8) and at 12/13th rib (RIB), eye muscle length by width (ELW), deep butt temperature (DBTEMP), fat colour score (FATC), meat colour score (MEATC), marbling score (MARB), and carcass muscle score (MUSC). Animals were finished to 3 different market weight endpoints, either on pasture or in a feedlot, and in different geographic regions for the TROP breeds. Both the phenotypic and genetic expressions of the traits were estimated at each level of market weight endpoint and finishing regime. Heritabilities (h2), and genetic (rg) and phenotypic (rp) correlations between traits were estimated for TEMP and TROP separately. The design effects of market weight endpoint and finishing regimes were the most important sources of variation for continuously measured traits. Main effects for the scored traits were finishing regime for FATC and MEATC and market weight endpoint for MARB and MUSC. Feedlot finished cattle had the whitest FATC and the lightest MEATC. For TEMP, estimates of h2 for CWT, RBY, IMF, P8, RIB, ELW, DBTEMP, FATC, MEATC, MARB, and MUSC were 0.39, 0.57, 0.38, 0.36, 0.27, 0.30, 0.10, 0.05, 0.11, 0.17, and 0.14, respectively. In comparison, h2 for the same order of traits for TROP were 0.36, 0.50, 0.39, 0.30, 0.41, 0.32, 0.04, 0.09, 0.11, 0.25, and 0.11. The direction and magnitude of rg between traits were similar for TEMP and TROP, particularly between CWT, RBY, IMF, P8, and RIB. Genetic correlations of RBY were moderate and negative with all measures of fatness, including IMF (–0.38 TEMP and –0.43 TROP). Positive rg existed between all measures of fatness, with MARB and IMF close to unity. Negative rg was estimated between CWT and all fat measurements. Also negative were the rg and rp estimates between CWT and MEATC. For all traits in both TEMP and TROP, domestic weight carcasses exhibited lower additive variance than export market carcasses. However, genetic correlations between traits across market weight endpoints were positive and close to unity, with the exception of RBY for TROP. For TEMP breeds, genetic correlations between finishing regimes were close to unity. However, possible genotype by environment interactions were found for TROP for P8, MEATC, and MARB between finishing in different geographic regions, and between feedlot and pasture finished animals for RBY and MEATC. Genetic improvement of carcass traits is a possibility given the moderate heritabilities, moderate to strong genetic correlations, and little evidence of genotype by environment interactions.

Genetic and phenotypic characterisation of animal, carcass, and meat quality traits from temperate and tropically adapted beef breeds. 3. Meat quality traits

Meat quality measures, including objective measures of tenderness (shear force and compression), were taken on 2 muscles [M. longissimus thoracis et lumborum (LTL) and M. semitendinosus (ST)] from 7566 carcasses from temperate (TEMP) and tropically adapted (TROP) beef cattle breeds. Animals were finished to 1 of 3 market carcass weight end-points (220, 280, or 340 kg) either on pasture or in a feedlot, and in 2 different geographic regions for TROP. Both the phenotypic and genetic expression of the traits were estimated at each market weight and for each finishing regime. Heritabilities and correlations between the traits were estimated for TEMP and TROP separately. Smaller additive variances and heritabilities were observed for temperate breeds compared with tropically adapted breeds for most of the traits studied. For TROP, the heritability of traits measured on the ST muscle [compression (ST_C), shear force (ST_SF), and L* Minolta lightness value (ST_L*)] was 0.27, 0.42, and 0.16, respectively, and for traits measured on the LTL muscle [compression (LTL_C), shear force (LTL_SF), L* Minolta lightness value (LTL_L*), a* Minolta redness value (LTL_a*), cooking loss% (LTL_CL%), and consumer assessed tenderness score (LTL_TEND)] 0.19, 0.30, 0.18, 0.13, 0.20, and 0.31, respectively. For TEMP, the heritability of traits measured on the ST muscle [ST_C, ST_SF, ST_L*, a* Minolta redness value (ST_a*), cooking loss % (ST_CL%)] was 0.12, 0.11, 0.17, 0.13, and 0.15, respectively, and of traits measured on the LTL muscle (LTL_C, LTL_SF, LTL_L, and LTL_TEND) were 0.08, 0.09, 0.17 and 0.18 respectively. Genetic correlations were moderate to high for tenderness measures (shear force and compression) between muscles for the same tenderness measure (e.g. LTL_SF and ST_SF was 0.46 for TROP) and within a muscle for the different measures (e.g. ST_C and ST_SF was 0.83 for TROP). Phenotypic and genetic correlations between LTL_L* and all objective measures of tenderness were negative (e.g. LTL_SF and LTL_L* for TROP was –0.40). The genetic relationship between LTL_SF and LTL_TEND was –0.79 and –0.49 for TROP and TEMP, respectively. Finishing system affected the phenotypic expression of all traits. Pasture-finished, compared with feedlot-finished, animals had higher shear force and compression measures, darker meat colour, and lower sensory tenderness scores for both TEMP and TROP. For TROP, heifers had higher shear force and compression measures, lower sensory tenderness scores, and darker meat colour (lower L* values) than steers. Genetic correlations between markets were generally high and close to unity with the exception of the ST_L*, LTL_L*, ST_C, and ST_SF for TEMP. Geographic region had little effect on the phenotypic and genetic expression of meat quality traits for TROP. Genetic correlations between finishing regimes for all traits were positive and close to unity, with the exception of ST_C and LTL_SF for TEMP, and LTL_L* and LTL_CL% for TROP. Genetic improvement of meat quality traits is a possibility for tropically adapted breeds given the moderate heritabilities, adequate phenotypic variance, generally favourable genetic correlations between traits, and little evidence of genotype by environment interactions.

CRC breeding program design, measurements and database: methods that underpin CRC research results

The Cooperative Research Centre (CRC) for the Cattle and Beef Industry (Meat Quality) developed an integrated research program to address the major production and processing factors affecting beef quality. Underpinning the integrated program were 2 large-scale progeny testing programs that were used to develop genetic, nutritional, management and beef processing technologies to overcome deficiencies in beef quality. This paper describes the experimental design, generation of experimental cattle and the collection and storage of data derived from these straightbreeding and crossbreeding progeny testing programs.

Sustained growth promotion, carcass and meat quality of steers slaughtered at three liveweights

The experiment measured the effect of a sustained growth promotion strategy on growth rate, carcass characteristics, and meat quality of Brahman and F 1 Brahman crossbred steers. Meat quality was assessed objectively by laboratory measurement and a subset of samples evaluated subjectively by consumer taste panels. Steers were allocated to one of 12 treatment groups; 2 implant strategies × 3 liveweights at slaughter × 2 nutritional finishing strategies. The 2 implant strategies were unimplanted controls and implantation with 20 mg oestradiol-17β (Compudose) every 100 days. The target carcass weights at slaughter were about 220 kg (Australian domestic market), about 280 kg (Korean market) and about 320 kg (Japanese market). Steers were finished either at pasture or on a grain-based diet in a feedlot. For every treatment group except where steers were finished in a feedlot for the domestic market, the implant strategy resulted in significantly (P<0.01) heavier final liveweights, significantly (P<0.01) greater cumulative liveweight gains and significantly (P<0.05) heavier carcass weights. The magnitudes of the significant liveweight responses ranged from 30 kg for pasture fed steers for the domestic market to 47 kg for pasture fed steers for the heavier weight Japanese market. Repeated treatment with oestradiol-17β had no significant effect on carcass composition as determined by indices of carcass lean and carcass fat. The additional yield of retail beef from implanted steers was principally associated with increased carcass weight. The magnitude of the increase in beef yield was 8 kg (n.s.) for domestic, feedlot steers; 15 kg (P<0.01) for Korean, feedlot steers and 18 kg (P<0.001) for Japanese, feedlot steers. In steers finished in the feedlot for the Korean and Japanese markets, sustained growth promotion was associated with a significant (P<0.01) decrease in meat tenderness as measured by peak force. In contrast there was no such effect in other groups measured (domestic market, feedlot finished and Japanese market, pasture finished). Consumer assessment of eating quality was conducted on steaks from steers, finished in a feedlot for the Korean and Japanese markets. At both slaughter weights there was no significant effect of treatment on tenderness, juiciness, flavour, overall acceptability or meat quality score which combined tenderness, juiciness, flavour and overall quality. However, mean preference scores from implanted steers were consistently lower than those from control steers. It was concluded that the aggressive implant strategy resulted in substantial increases in weight gain that were more pronounced during periods of moderate growth rate relative to periods of very low rates of gain. During periods of low weight gains or weight stasis there was little advantage from implantation. Carcass composition was not significantly modified by treatment with oestradiol. The effect of the aggressive implantation strategy on eating quality of the beef was equivocal and further investigation is certainly warranted.

Quantitative and molecular genetic influences on properties of beef: a review

The scientific literature is reviewed to identify quantitative and molecular genetic influences on quantity and quality of beef. Genetic variation between breeds is of similar magnitude to genetic variation within breeds for many economically important traits. Differences between breeds are significant and large for most carcass and beef quality attributes, including beef tenderness, although differences for sensory juiciness and flavour are of little practical importance. For traits such as beef tenderness, between-breed differences may be more easily exploited than within-breed differences, because exceptional breeds are easier to identify than exceptional animals. Effects of heterosis on carcass and beef quality attributes are relatively small (3% or less), with most effects mediated through heterotic effects on weight. Carcass composition traits (e.g. carcass weight, fat thickness and marbling) are moderately to highly heritable. Most estimates of retail beef yield percentage are highly heritable, offering good potential for within-breed selection for the trait, although a moderate to strong antagonistic relationship exists between yield and marbling. This relationship needs to be considered in within-breed selection programs for yield percentage. Early estimates of heritability of objective measures of beef tenderness (Warner Bratzler shear force values) indicated tenderness was moderately to highly heritable. Recent estimates using larger numbers of carcasses and more discriminatory methods of analysis indicate that beef tenderness is lowly heritable in Bos taurus breeds and moderately heritable inBos indicus and Bos indicus-derived breeds. Within breeds, measures of 24-h calpastatin activity are genetically strongly correlated with shear force values but are more heritable. However, phenotypic correlations between shear force values and 24-h calpastatin activities are low. There are also inconsistencies in relationships between these measurements across breeds. Low correlations between tenderness in different muscles, low to moderate heritabilities and inconsistent variation within- and between-breeds for traits such as 24-h calpastatin activity suggest that genetic improvement in beef tenderness may be difficult. The possibility exists that significant mitochondrial genetic effects occur for some carcass and beef quality attributes. A major gene for muscular hypertrophy in cattle significantly affects carcass and beef quality characteristics. Genome-wide screening of DNA markers indicates a number of putative Quantitative Trait Loci (QTL) associated with carcass and meat quality characteristics. Published data for these QTL are summarised. Strategies to combine quantitative and molecular genetic information to maximise genetic progress are discussed.

Genetic and environmental factors affecting temperament of zebu and zebu-derived beef cattle grazed at pasture in the tropics

Separate experiments were conducted in 2 zebu-derived herds grazed at pasture in the dry tropics of Central Queensland, to determine genetic and environmental effects on At Duckponds, temperament of crossbreed steers and heifers from 2 calf crops was assessed using an objective flight speed score and 2 subjective scores (a visual flight speed score and a crush score) to determine whether the subjective tests were useful as selection criteria for on-farm selection programs. At Belmont, temperament of bull and heifer calves from 7 calf crops was measured by recording objective flight speed scores of individual animals at weaning (6 months), 12 months, and 18 months. At Duckponds, heritabilities of average objective flight speed, visual flight speed, and crush scores were 0.35, 0.08, and 0.30, respectively. Phenotypic and genetic correlations between the different measures of temperament were moderate to low. Based on low correlations and re-ranking of fixed effect classes that occurred between subjective tests, it was concluded the subjective tests were not sufficiently correlated with the objective measure to justify their use. The objective flight speed score is recommended as the test of choice for use in breeding programs using Bos indicus or Bos indicus derived animals. At Belmont, even a single flight speed score was moderately heritable, but use of the average of 2 or 3 repeated flight speed scores substantially increased heritability. The realised heritability of average flight speed score was 0.48, almost identical to the estimated heritability of average flight speed score of 0.50. Direct responses to a single generation of divergent selection for single flight speed scores at different ages demonstrated that selection for flight speed was effective in modifying flight speed scores of progeny. Correlated responses to divergent selection for flight speed scores indicated that, under extensive grazing systems, the economic value of temperament arose mainly through a reduction in production costs. There were significant differences in temperament scores between sire breeds used in the crossbreeding experiment at Duckponds, but there were no differences between lines at Belmont. From these results, it is possible that Continental breeds either have specific, negative combining ability when crossed with Brahmans, or themselves have temperaments that are no better than those of Bos indicus. Treatment to control gastrointestinal parasites (worms) had a significant (P < 0.001) negative effect on flight speed.

Synchronization of estrus and fertility in zebu beef heifers treated with three estrus synchronization protocols

The effects on estrus and fertility of 3 estrus synchronization protocols were studied in Brahman beef heifers. In Treatment 1 (PGF protocol; n=234), heifers received 7.5 mg, i.m. prostianol on Day 0 and were inseminated after observed estrus until Day 5. Treatment 2 (10-d NOR protocol; n = 220) consisted of norgestomet (NOR; 3 mg, s.c. implant and 3 mg, i.m.) and estradiol valerate (5 mg, i.m.) treatment on Day -10, NOR implant removal and 400 IU, i.m. PMSG on Day 0, and AI after observed estrus through to Day 5. Treatment 3 (14-d NOR+PGF protocol; n = 168) constituted a NOR implant (3 mg, sc) on Day -14, NOR implant removal on Day 0, PGF on Day 16, and AI after observed estrus through to Day 21. All heifers were examined for return to estrus at the next cycle and inseminated after observed estrus. The heifers were then exposed to bulls for at least 21 d. During the period of estrus observation (5 d) after treatment, those heifers treated with the PGF protocol had a lower (P<0.01) rate of estrual response (58%) than heifers treated with the 10-d NOR (87%) or 14-d NOR+PGF (88%) protocol. Heifers treated with the 10-d NOR protocol displayed estrus earlier and had a closer synchrony of estrus than heifers treated with either the PGF or the 14-d NOR+PGF protocol. Heifers treated with the 14-d NOR+PGF protocol had higher (P<0.05) conception and calving rates (51 and 46%) to AI at the induced estrus than heifers treated with the PGF (45 and 27%) or the 10-d NOR (38 and 33%) protocol. Calving rate to 2 rounds of AI was greater (P<0.05) for heifers treated with the 14-d NOR-PGF (50%) protocol than heifers treated with the 10-d NOR (38%) but not the PGF (43%) protocol. Breeding season calving rates were similar among the 3 protocols. The results show that the 14-d NOR+PGF estrus synchronization protocol induced a high incidence of estrus with comparatively high fertility in Brahman heifers.

Relationships between temperament and growth in a feedlot and commercial carcass traits of Bos indicus crossbreds

Summary. Two cohorts of Bos indicus crossbreds were studied to determine the relationships between temperament and growth in a feedlot and commercial carcass characteristics. Prior to entry to the feedlot, one cohort received intensive, short-term training at weaning but minimal handling before and after weaning, while the second cohort received similar training at weaning and also experienced a 4-month period of relatively intense handling immediately before entering the feedlot. Both cohorts entered the feedlot at similar ages. Temperament was recorded as the animal’s flight speed, which is the time taken for the animal to cover 1.7 m after leaving a weighing crush, with fast times indicating animals that have poor temperaments. Average flight speed scores of animals in the 2 cohorts differed substantially, with 51 and 12% of animals in cohorts 1 and 2 respectively having fast flight speed scores. Conversely, 23 and 69% of animals in cohorts 1 and 2 respectively had slow flight speed scores and could therefore be regarded as docile. In the first cohort, animals with slow flight speeds gained weight more rapidly (P<0.05) to achieve heavier slaughter and carcass weights (P<0.05) than animals with fast flight speeds. The relationship between flight speed and growth in the feedlot in the second cohort was not significant, although animals with the fastest flight speeds in that cohort had the lowest liveweight gains. Docile animals in both cohorts had comparable liveweight gains in the feedlot. These results suggest that animals with slow flight speed scores (good temperaments) may grow faster in a feedlot than animals with faster flight speed scores (poorer temperaments), regardless of whether the favourable scores result from intensive, long-term handling or because the animals are naturally docile. There was no relationship in either experiment between flight speed and fat thickness or carcass bruising, when bruising was scored simply as presence or absence of bruising. A negative relationship was evident between flight speed score and dressing percentage in the second cohort (P<0.05). The relationship between flight speed and dressing percentage was not significant in the first cohort. It is suggested that feedlot operators could select potential feedlot animals on the basis of temperament before entry to the feedlot to improve performance in the feedlot.

Consequences of selection for weaning weight in zebu, Bos taurus and zebu × Bos taurus cattle in the tropics

Direct and correlated responses to a single generation of divergent selection for weaning weight per day of age (WA/A) were examined in Bos taurus, zebu and zebu crossbred cattle in a tropical environment. Selection for high WW/A resulted in increased liveweights at all ages in all genotypes, with the exception of birth weight in the Bos taurus genotype. Preweaning daily gains were higher in all genotypes selected for high WW/A, but postweaning daily gains did not differ in two zebu crossbred genotypes. Overall parasite and heat resistance did not change significantly as a result of selection. However, selection within the more resistant genotype/sex populations resulted in higher tick and worm burdens, while in the more susceptible populations tick and worm loads decreased. An examination of lifetime cow fertility showed that cows with high preweaning growth reared more calves to weaning (P < 0.05), had fewer neonatal mortalities (P < 0.10) and also calved earlier (P < 0.01) than cows with low preweaning growth, leading to the conclusion that cows with high WW/A have improved lifetime fertility. Heritability of birth weight, WW/A and 18 month weight per day of age over all genotypes was estimated by parent-offspring regression to be 0.46, 0.21 and 0.22 for each of the traits respectively. The realized heritability of WW/A was 0.17 over all genotypes.

Consequences of selection for growth and heat resistance on growth, feed conversion efficiency, commercial carcass traits and meat quality of Zebu crossbred cattle

Thirty-five steers and 37 heifers were grown at pasture and finished in a feedlot to meet Australian domestic market specifications, i.e. 160-200 kg carcass weight with 5-9 mm subcutaneous fat at the P8 rump site. The animals were from lines that had been selected for either high growth rate to 600 days (UPWT) or for low rectal temperature under conditions of high ambient temperatures (TEMP) and from a control line (CONT). They were slaughtered in six groups at fortnightly intervals when liveweight of individuals was estimated to satisfy market requirements. Animals from the UPWT line were heavier at all ages than animals from the TEMP and CONT lines (P< 0.05) and had higher liveweight gains at pasture (P < 0.01). There was no difference between the lines in liveweight gains in the feedlot. At the same carcass weight, UPM animals had leaner carcasses (P < 0.01) but similar levels of marbling to CONT line animals. TEMP line animals were also leaner than CONT line animals (P < 0.0l ) , but had more marbling (P<0.01). There was no significant difference between lines in feed conversion efficiency. Steers were heavier (P < 0.001) than heifers at all ages, grew faster (P < 0.001) except during the immediate post-castration period, had higher feed intakes (P < 0.05) but better feed conversion efficiencies (P < 0.05), and at the same carcass weight were leaner (P < 0-01) and had less marbling (P < 0.05). Meat colour, cooking loss, ultimate pH and meat tenderness did not differ significantly between lines or sexes. These results are discussed with reference to the use of selection for growth or heat resistance to improve growth and carcass traits of beef herds in tropical areas.

In vitro heterogeneity in human gliomas. Are all transformed cells of glial origin?

Primary cultures from 30 human gliomas (26 high grade, 3 low grade, and one oligoastrocytoma) were studied to examine the mixture of cells that make up the outgrowth, and their interactions. GFAP + ve Fibronectin - ve cells had a predominantly process forming (PF) morphology and formed complex networks around explants. Fibronectin + ve GFAP-ve cells had a flattened adherent (FA) morphology, tended to increase in time in culture, in 11 tumours showed a transformed pattern of growth, and may derive from perivascular mesenchyme. Neoplastic glial cells in vivo, or in vitro, may influence the behaviour and nature of other cells in tumour tissue which may be of significance in tumour behaviour and progression.

Environmental and genotype effects on fertility in a commercial beef herd in central Queensland

Joining liveweight, proportion pregnant and calving date were recorded from relatively low fertility (RLF) and relatively high fertility (RHF) tropically adapted genotypes. RLF genotypes were F2 et seq. Brahman x British crossbreds and Brahman back crosses while RHF genotypes were F1 Brahman x British and Africander infused crossbreds. Year effects had the largest and most consistent influence on joining liveweight, proportion of cows pregnant and calving date. RLF genotypes had a lower proportion pregnant than RHF genotypes in yearling heifers, 2-5-year-old and >9- year-old lactating cows, but there was no difference in the 6-8-year age group. Calving dates tended to be later in the RLF genotypes in the 2-5-year age groups, but were the same as RHF genotypes in older age groups. Annual variation in joining liveweight was explained by May-October rainfall, which was an indication of pasture productivity levels. The proportion of cows pregnant was related to joining liveweight; to achieve a high proportion in the RHF genotypes, target joining liveweights of about 275 and 375 kg were indicated for yearling heifers and lactating cows, respectively. There was no difference between RLF and RHF in the 6-8-year lactating age group, but in other age groups RLF genotypes tended to require an extra 25-75 kg joining liveweight to approximate the proportion pregnant in RHF genotypes over the lower and mid-liveweight ranges. However, at highest joining liveweights, RLF had a lower proportion pregnant than did RHF genotypes. Calving date influenced the proportion that became pregnant during the subsequent joining season, young cows being more sensitive to calving date than old cows, and RLF more sensitive than RHF genotypes.

Human lymphoid cell lines and glucocorticoids: I. Characterization and cytolethal responses of lymphoblastoid, leukaemia and lymphoma lines

Using various genotypic and phenotypic markers 20 human lymphoid cell lines have been classified as lymphoblastoid, leukaemia or lymphoma subtypes. Each cell line type exhibited characteristic morphological and behavioural properties in suspension culture. Whilst most lymphoblastoid and lymphoma cell lines manifested B-cell phenotypes and contained Epstein Barr virus (EBV) genome, leukaemia lines demonstrated T-cell markers and lacked EBV genome. Individual cell lines demonstrated unique isoenzyme profiles for the seven polymorphic enzymes studied without subtype specificity. None of the cell lines studied was entirely homogeneous although lymphoblastoid lines contained only a minor subpopulation of other cell line types. The mixed population of cells indicate the need for caution in the use of these cell lines as in vitro models of lymphoid cancer and suggests further refinement of classification methods is required. Incubation of different cell line types with prednisolone for 48-168 h revealed most were highly resistant to cytolethal and cytostatic effects of glucocorticoids in vitro. Suprapharmacological doses of steroid (10(-3) M) were required in most instances before significant cytolethal responses occurred. Only one lymphoblastoid, one lymphoma and two leukaemia lines responded to pharmacological doses (10(-5)-10(-6) M) of prednisolone.

Human lymphoid cell lines and glucocorticoids: II. Whole cell and cytoplasmic binding properties of lymphoblastoid, leukaemia and lymphoma lines

The glucocorticoid binding properties of 18 human lymphoid cell lines (HLCL) have been investigated. The specificity of steroid binding was confirmed with various glucocorticoid agonists and antagonists. A gradation in whole cell and cytoplasmic glucocorticoid binding capacity was observed in the different cell line types: lymphoblastoid greater than lymphoma greater than leukaemia. The cytoplasmic receptors of leukaemia and lymphoblastoid lines appeared to contain both proteinaceous and phospholipid components. Cytoplasmic steroid-receptor complexes exhibited a wide range of sedimentation coefficients (8.5-11.3S) in low ionic strength buffer but there was no correlation with cell line type or glucocorticoid sensitivity. Activation of these complexes by heat (37 degrees C) or exposure to high ionic strength buffer (0.3 M NaCl) induced nuclear binding of steroid but only complexes in high ionic strength buffer manifested changes in sedimentation coefficient. No correlation was observed between the level or nature of glucocorticoid binding and the cytolethal or cytostatic responsiveness of HLCL to glucocorticoid treatment in vitro. The resistance to cytolethal effects cannot be ascribed to a failure of cells to take up and bind steroid or to significant differences in the molecular species of cytoplasmic receptors present. The molecular mechanisms by which glucocorticoids achieve cytolethal responses in human lymphoid cells has still to be resolved.