Relationship between wild greylag and European domestic geese based on mitochondrial DNA

The origins of the European domestic goose are uncertain. The available information comes from archaeological findings and historical literature, but genetic evidence has hitherto been scarce. The domestic goose in Europe is derived from the greylag goose (Anser anser), but it is not known where the initial domestication took place and which of the two subspecies of greylag goose was ancestral. We aimed to determine the amount and geographical distribution of genetic diversity in modern populations of greylag geese as well as in different breeds of the domestic goose to make inferences about goose domestication. We studied DNA sequence variation in the mitochondrial control region of greylag geese from multiple populations across Europe and western Asia as well as specimens of domestic geese representing 18 modern breeds and individuals not belonging to any recognised breed. Our results show notable differences in genetic diversity between different greylag goose populations and the presence of six mitochondrial haplogroups which show a degree of geographical partitioning. The genetic diversity of the domestic goose is low, with 84% of sampled individuals having one of two major closely related haplotypes, suggesting that modern European domestic geese may derive from a narrow genetic base. The site of domestication remains unresolved, but domestic geese in Turkey were unusually diverse, indicating the importance of further sampling in the vicinity of the eastern Mediterranean and the Near East. There appears to be past or ongoing hybridisation between greylags and domestic geese in particular areas, consistent with field observations.

A forensic DNA profiling system for Northern European brown bears (Ursus arctos)

A set of 13 dinucleotide STR loci (G1A, G10B, G1D, G10L, MU05, MU09, MU10, MU15, MU23, MU26, MU50, MU51, MU59) were selected as candidate markers for a DNA forensic profiling system for Northern European brown bear (Ursus arctos). We present results from validation of the markers with respect to their sensitivity, species specificity and performance (precision, heterozygote balance and stutter ratios). All STRs were amplified with 0.6ng template input, and there were no false bear genotypes in the cross-species amplification tests. The validation experiments showed that stutter ratios and heterozygote balance was more pronounced than in the tetranucleotide loci used in human forensics. The elevated ratios of stutter and heterozygote balance at the loci validated indicate that these dinucleotide STRs are not well suited for interpretation of individual genotypes in mixtures. Based on the results from the experimental validations we discuss the challenges related to genotyping dinucleotide STRs in single source samples. Sequence studies of common alleles showed that, in general, the size variation of alleles corresponded with the variation in number of repeats. The samples characterized by sequence analysis may serve as standard DNA samples for inter laboratory calibration. A total of 479 individuals from eight Northern European brown bear populations were analyzed in the 13 candidate STRs. Locus MU26 was excluded as a putative forensic marker after revealing large deviations from expected heterozygosity likely to be caused by null-alleles at this locus. The remaining STRs did not reveal significant deviations from Hardy-Weinberg equilibrium expectations except for loci G10B and MU10 that showed significant deviations in one population each, respectively. There were 9 pairwise locus comparisons that showed significant deviation from linkage equilibrium in one or two out of the eight populations. Substantial genetic differentiation was detected in some of the pairwise population comparisons and the average estimate of population substructure (F(ST)) was 0.09. The average estimate of inbreeding (F(IS)) was 0.005. Accounting for population substructure and inbreeding the total average probability of identity in each of the eight populations was lower than 1.1×10(-9) and the total average probability of sibling identity was lower than 1.3×10(-4). The magnitude of these measurements indicates that if applying these twelve STRs in a DNA profiling system this would provide individual specific evidence.

Frequency of multiple insemination in a natural population of Drosophila montana

The frequency of multiple insemination was studied in a boreal Drosophila montana population using mother-offspring data for a sex-linked allozyme locus. Mating with respect to the marker studied was random. In crowded laboratory cultures the heterozygous offspring had higher viability than homozygotes, but no deviations from Hardy-Weinberg proportions were found in natural populations. In multiply sired progenies the males did not contribute equally to the progeny, but the proportion sired by the second male was 0.76. The estimated frequency of multiple inseminated females was 1.19 +/- 0.31, indicating that practically all the females carried sperm of at least two males. The estimate is the largest ever reported in natural populations of Drosophila. However, the interspecific comparisons may not be relevant, because the frequency of multiple insemination does not necessarily reflect the real lifetime frequency of multiple matings. The effects of local ecology and life history characters, e.g., the uniform age structure and the temporal patterning of matings, on the high degree of detected multiple inseminations are discussed.

Genetic diversity, population structure, effective population size and demographic history of the Finnish wolf population

The Finnish wolf population (Canis lupus) was sampled during three different periods (1996-1998, 1999-2001 and 2002-2004), and 118 individuals were genotyped with 10 microsatellite markers. Large genetic variation was found in the population despite a recent demographic bottleneck. No spatial population subdivision was found even though a significant negative relationship between genetic relatedness and geographic distance suggested isolation by distance. Very few individuals did not belong to the local wolf population as determined by assignment analyses, suggesting a low level of immigration in the population. We used the temporal approach and several statistical methods to estimate the variance effective size of the population. All methods gave similar estimates of effective population size, approximately 40 wolves. These estimates were slightly larger than the estimated census size of breeding individuals. A Bayesian model based on Markov chain Monte Carlo simulations indicated strong evidence for a long-term population decline. These results suggest that the contemporary wolf population size is roughly 8% of its historical size, and that the population decline dates back to late 19th century or early 20th century. Despite an increase of over 50% in the census size of the population during the whole study period, there was only weak evidence that the effective population size during the last period was higher than during the first. This may be caused by increased inbreeding, diminished dispersal within the population, and decreased immigration to the population during the last study period.

Local genetic population structure in an endangered plant species, Silene tatarica (Caryophyllaceae)

Genetic substructuring in plant populations may evolve as a consequence of sampling events that occur when the population is founded or regenerated, or if gene dispersal by pollen and seeds is restricted within a population. Silene tatarica is an endangered, perennial plant species growing along periodically disturbed riverbanks in northern Finland. We investigated the mechanism behind the microspatial genetic structure of S. tatarica in four subpopulations using amplified fragment length polymorphism markers. Spatial autocorrelation revealed clear spatial genetic structure in each subpopulation, even though the pattern diminished in older subpopulations. Parentage analysis in an isolated island subpopulation indicated a very low level of selfing and avoidance of breeding between close relatives. The mean estimated pollen dispersal distance (24.10 m; SD = 10.5) was significantly longer and the mean seed dispersal distance (9.07 m; SD = 9.23) was considerably shorter than the mean distance between the individuals (19.20 m; SD = 13.80). The estimated indirect and direct estimates of neighbourhood sizes in this subpopulation were very similar, 32.1 and 37.6, respectively. Our results suggested that the local spatial genetic structure in S. tatarica was attributed merely to the isolation-by-distance process rather than founder effect, and despite free pollen movement across population, restricted seed dispersal maintains local genetic structure in this species.

QTL analysis of variation in male courtship song characters in Drosophila virilis

We have used a quantitative trait locus (QTL) mapping approach to study the genetic basis of differences between two Drosophila virilis strains representing extreme phenotypes in two song characters, the number of pulses in a pulse train (PN) and the length of a pulse train (PTL). Variation in these characters among 520 F2 males was studied by single-marker analysis and composite interval mapping (CIM) using a recombination linkage map constructed for 26 microsatellite markers. In single-marker analysis, two adjacent microsatellite markers on the third chromosome, msat19 and vir84 explained 13.8 and 12.4% of the variation in PN and 9.9 and 6.5% of the variation in PTL, respectively. CIM analysis revealed significant QTLs affecting PN, located on the X and the second, third and fourth chromosome of D. virilis, while variation in PTL was attributable to QTLs located only on the third chromosome.

Genetic structure and gene flow in a metapopulation of an endangered plant species, Silene tatarica

We investigated the distribution of genetic variation within and between seven subpopulations in a riparian population of Silene tatarica in northern Finland by using amplified fragment length polymorphism (AFLP) markers. A Bayesian approach-based clustering program indicated that the marker data contained not only one panmictic population, but consisted of seven clusters, and that each original sample site seems to consist of a distinct subpopulation. A coalescent-based simulation approach shows recurrent gene flow between subpopulations. Relative high FST values indicated a clear subpopulation differentiation. However, amova analysis and UPGMA-dendrogram did not suggest any hierarchical regional structuring among the subpopulations. There was no correlation between geographical and genetic distances among the subpopulations, nor any correlation between the subpopulation census size and amount of genetic variation. Estimates of gene flow suggested a low level of gene flow between the subpopulations, and the assignment tests proposed a few long-distance bidirectional dispersal events between the subpopulations. No apparent difference was found in within-subpopulation genetic diversity among upper, middle and lower regions along the river. Relative high amounts of linkage disequilibrium at subpopulation level indicated recent population bottlenecks or admixture, and at metapopulation levels a high subpopulation turnover rate. The overall pattern of genetic variation within and between subpopulations also suggested a 'classical' metapopulation structure of the species suggested by the ecological surveys.

Inheritance of species differences in female receptivity and song requirement between Drosophila virilis and D. montana

Females of two Drosophila virilis group species, D. virilis and D. montana, have different requirements for the courting males. In the present study we have examined species differences in female receptivity and male courtship song requirement using females' acceptance signal instead of copulation for measuring female readiness to mate. Behavior of D. virilis and D. montana females and F1 and backcross hybrid females was observed in a single-pair courtships with D. virilis and D. montana males and normal and wingless (mute) F1 hybrid males. D. virilis females were very receptive and they commonly accepted the courtship of males unable to produce courtship song. D. montana females, on the contrary, had a low receptivity and these females accepted the courting male only after hearing his song. Interspecific F1 and backcross (BCm) females resembled D. virilis more than D. montana in their receptivity. These females, however, resembled D. montana in their song requirement. These findings suggest that female song requirement and female receptivity are determined by different genetic factors.

Inbreeding and outbreeding depression in male courtship song characters in Drosophila montana

In Drosophila montana, male courtship song frequency is closely associated with male courtship success and offspring survival. Other pulse characters (pulse length and cycle number) may also affect female mate choice, whereas pulse train characters (interpulse interval, pulse number and pulse train length) are not associated with these male fitness components. Inbreeding depression in these song characters was investigated by comparing the songs of inbred and outbred fly strains. The average change in most song characters as a result of inbreeding was only a few percent. However, in male song frequency the average inbreeding depression was about 14%, suggesting that this song character is associated with fitness. Outbreeding depression and the genetic architecture of song characters were investigated with interpopulation crosses and joint scaling tests. For pulse train characters the generation means show only evidence of additivity, and the existence of dominance or epistasis in these characters was strongly rejected in each case. In pulse characters the means of the F1 males were lower than the average of the parental generations. In pulse length and cycle number this difference was attributable to dominance alone. In frequency there was outbreeding depression also in the F2 generation, suggesting a break-up of favourable epistatic gene combinations. The outbreeding depression in this character in the F1 generation was caused by dominance, and in the F2 also by duplicate epistasis between dominant decreasers. The possible role of outbreeding depression and epistasis in speciation is discussed.

Localization of genes affecting species differences in male courtship song between Drosophila virilis and D. littoralis

The males of six species of the Drosophila virilis group (including D. virilis) keep their wings extended while producing a train of sound pulses, where the pulses follow each other without any pause. The males of the remaining five species of the group produce only one sound pulse during each wing extension/vibration, which results in species-specific songs with long pauses (in D. littoralis about 300 ms) between successive sound pulses. Genetic analyses of the differences between the songs of D. virilis and D. littoralis showed that species-specific song traits are affected by genes on the X chromosome, and for the length of pause, also by genes on chromosomes 3 and 4. The X chromosomal genes having a major impact on pulse and pause length were tightly linked with white, apricot and notched marker genes located at the proximal third of the chromosome. A large inversion in D. littoralis, marked by notched, prevents more precise localization of these genes by classical crossing methods.

Variation and consistency of female preferences for simulated courtship songs in Drosophila virilis

To study the variation and consistency of song preferences in Drosophila virilis females, we played them species-specific song and songs with modified sound pulses and/or interpulse intervals on 3 consecutive days. Species-specific song was played again on the fourth day. All playbacks were done without the presence of males. About 62% of the females indicated their readiness to mate by spreading their wings in at least one of the trials. The proportion of the females responding to species-specific song was about twice that of the females responding to modified songs. The majority of females responded to only one song type, which suggests that the females varied in their preferences and that their preference windows were rather narrow. The females were consistent in their responsiveness to species-specific song played on 2 days. If the female responded to normal song during the first trial, the probability of her responding to the same song during the second trial increased by about 32%. The number of songs required by the females before responding in the two subsequent trials was also correlated within the females (repeatability 0.328). Repeatability of female preferences for male sexual traits is expected both in the viability and Fisherian models of sexual selection. Copyright 1999 The Association for the Study of Animal Behaviour.

Male courtship song frequency as an indicator of male genetic quality in an insect species, Drosophila montana

Most theoretical models on evolution of male secondary sexual characters and female preferences for these characters suggest that the male characters evolve in response to female preferences that may themselves evolve in response to direct or indirect benefits of choice. In Drosophila montana (a species of the D. virilis group), females use male song in their mate choice, preferring males that produce songs with short sound pulses and a high carrier frequency. We demonstrate here that the females get indirect benefits from their choice: in our data the frequency of the male song correlated with the survival rate of the male's progeny from egg to adulthood (indirect benefit for the female), but not with the fecundity of his mating partner (no direct benefit for the female). Male wing centroid asymmetry did not correlate with male wing song characters, nor with female egg production nor the fitness of her progeny, suggesting that fluctuating asymmetry in male wings does not play a major role in sexual signalling. The fact that the male song gives the female information on the male's condition/genetic quality in D. montana suggests that in this species the evolution of female preferences for male song characters could have evolved through condition-dependent viability selection presented in some 'good genes' models.

Laboratory and natural heritabilities of male courtship song characters in Drosophila montana and D. littoralis

We estimated heritabilities for several male courtship song characters in two Drosophila species using father-son regression under conditions where both fathers and sons had been raised in the laboratory. In D. montana the heritabilities of song characters were rather high (-0.23 to 0.80) and in most cases significant. In D. littoralis the heritabilities of song characters were generally lower (-0.33 to 0.18), and none of them was significantly larger than zero. We also estimated heritabilities regressing characters of wild-caught fathers with those of their laboratory reared sons, and used the method employed by Riska et al. to estimate the lower bound of heritabilities in nature. In D. montana most and in D. littoralis all of the across-environment heritabilities were non-significant (-0.15 to 0.43 and -0.04 to 0.15, respectively), and in some cases the across-environment heritabilities were significantly lower than the heritabilities measured under laboratory conditions. The low across-environment heritabilities appeared to be due to larger phenotypic variability of song characters in the field and in some cases also due to genotype-environment interactions.

The effects of stand characteristics on reindeer lichens and range use by semi-domesticated reindeer

The study was carried out in Kuusamo (66°15'N, 29°05'E) and Inari (68°30'N, 28°15'E), northern Finland, where 24 and 22 Scots pine stands were studied respectively. Clear-cutting (logging residue) caused a decline in lichen biomass for some few years, but otherwise the age of the stand had no effect upon lichen biomass. Instead, a positive correlation was found between litter/logging residue and the mean height of lichens; in Kuusamo, logging residue decreased significantly with the age of the stand. Grazing pressure in terms of fecal group density increased with the age of the stand. The preference of old forests came visible also as a lower mean height of lichens, which eliminates the possibility that the preference of old forests is associated only to the use of arboreal lichens. In Inari, grazing pressure sharply increased after the stand had reached the age of 100 years despite scarce litter/logging residue and fair lichen ranges in younger forests; there prevailed a negative correlation between stand density and grazing pressure. It has been suggested that there might be three main reasons for reindeers preferring old forests: 1) hardening of the snow (because of winds) on clear-cut areas, 2) logging residue preventing digging for the food beneath the snow, and 3) poor visibility in young pine stands (Inari) which might increase predation risk.

Sized-related changes in winter condition of male calves in reindeer

<p>Size-related changes in body condition of free-ranging male calves of semi-domesticated reindeer were studied in northern Finland from October 1983 to February 1984. In October-November, back fat depth or muscle fat percent correlated positively with the body size (=back length). In January, the highest means especially for muscle fat percent were found among medium-sized calves. Carcass weight and weight/back length ratio correlated positively with size, excluding February sample, where correlation for carcass weight was non-significant and for weight/back length ratio negative. Weight in the autumn correlated negatively with weight in February. Therefore, normalizing selection for body size (working against small and large phenotypes) is expected to occur in late winter. Small calves may be at greater mortality risk because of lower initial body reserves. Large calves commonly disperse during the rutting season and they may suffer most from increased food competition later in winter. Using of medium-sized calves for breeding might be the safest policy on ranges characterized by short food supply and difficult snow conditions.</p><p>Koon vaikutus poron urosvasojen talviseen kuntoon.</p><p>Abstract in Finnish / Tiivistelm&auml;: Koon vaikutusta vapaana laiduntavien poron urosvasojen kuntoon tutkittiin Pohjois-Suomessa loka-helmikuussa talvella 1983-84. Loka-marraskuussa selk&auml;rasvan paksuus tai lihaksen rasvaprosentti riippui vasan koosta ( = sel&auml;n pituus). Tammikuussa sen sijaan lihaksen rasvaprosentti oli korkein keskikokoisilla vasoilla. Ruhopaino sek&auml; ruhopaino/sel&auml;n pituus oli yleensa riippuvainen koosta. Helmikuussa ruhopainon riippuvuus koosta ei ollut en&auml;&auml; tilastollisesti merkitsev&auml;, ja koon ja ruhopainon/sel&auml;npituuden v&auml;linen korrelaatio oli negatiivinen. Eniten painoa menettiv&auml;t (%) loka-helmikuun v&auml;lill&auml; suurikokoisimmat vasat. Havainnot viittaavat siihen, ett&auml; talvella esiintyv&auml; kuolleisuus on normalisoivaa koon suhteen (karsii pieni&auml; ja suuria fenotyyppej&auml;). Pienten vasojen kuolleisuusriski on suuri alunperinkin v&auml;h&auml;isen varastoravinnon vuoksi. Suuret vasat puolestaan erkaantuvat usein emist&auml;&auml;n jo rykim&auml;aikana, ja joutuvat k&auml;rsim&auml;&auml;n eniten talven mittaan kiristyv&auml;st&auml; ravintokilpailusta. Niukoilla laitumilla siitokseen on turvallisinta s&auml;&auml;st&auml;&auml; keskikokoisia vasoja.</p><p>Sammenhengen mellom st&oslash;rrelse og vinterkondisjon hos hankalver av reinsdyr.</p><p>Abstract in Norwegian / Sammendrag: St&oslash;rrelses-relaterte forandringer i kroppskondisjon hos fritt beitende han-kalver av semidomestiserte rein er studert i Nord-Finland fra oktober 1983 til februar 1984. I oktober - november korrelerte tykkelsen av ryggfettet eller muskelfett-prosenten positivt med kroppsst&oslash;rrelsen (= rygglengden). I januar ble de h&oslash;yeste middelverdier, s&aelig;rlig for muskelfett-prosenten, funnet hos kalver av middels st&oslash;rrelse. Skrott-vekter og vekt/rygglengde-forholdet korrelerte positivt med kroppsst&oslash;rrelse bortsett fra februar-pr&oslash;vene, der korrellasjonen for skrott-vekt var ikke-signifikant og for vekt/rygglengde-forholdet var negativt. Vekt om h&oslash;sten korrelerte negativt med vekt i februar. Derfor ventes et normaliserende utvalg for kroppsvekt (som arbeider mot sm&aring; og store fenotyper) &aring; skje p&aring; senvinteren. Sm&aring; kalver er utsatt for st&oslash;rre d&oslash;dsrisiko p&aring; grunn av lavere kroppsreserver. Store kalver streifer vanligvis under brunsttiden og kan komme til &aring; lide under &oslash;kt n&aelig;ringskonkurranse p&aring; senvinteren. Bruk av middels store kalver i avlen kan v&aelig;re den sikreste metode p&aring; beiter som karakteriseres av d&aring;rlige n&aelig;ringstilgang og vanskelige sn&oslash;forhold.</p>

The growth rate of Cladonia rangiferina and C. mitis in relation to forest characteristics in northeastern Finland

<p>The growth rate of Cladonia rangiferina and C. mitis was studied in Kuusamo, northeastern Finland, where they share more than 90 percent of the total lichen biomass. The material was collected from 5 pine forests of different ages in Calluna-Cladina heaths. The length growth rate of C. rangiferina varied by site from 3.9 to 4.3 mmyr -' and that of C. mitis from 3.0 to 3.5 mmyr-1 C. rangiferina achieved the fastest growth in a younger (60 years) shadowy forest; growth was slowest in a clear-felled area and in an old (180 years), already thinned forest. C. mitis grew fastest in a site with young (10 years old) pine plants and slowest in a younger shadowy site. The results do not support suggestions that clear-felling itself might negatively influence the growth of lichens. However, it is important also from the point of view of range management to create a new forest as soon as possible, since both species studied here grew faster in young forests than in clear-felled areas.</p><p>Harmaaporonjakalan ja mietoporonjakalan kasvunopeus eri-ikaisissa metsissa.</p><p>Abstract in Finnish / Yhteenveto: Harmaaporonjakalan (Cladonia rangiferina) ja mietoporonjakalan (Cladonia mitis) kasvunopeutta tutkittiin Kuusamossa. Aineisto kerattiin 5 puustoltaan eri-ikaiselti jakalakankaalta. Harmaaporonjakala kasvoi pituutta keskimaarin 3.9 - 4.3 mm/v ja mietoporonjakala 3.0 - 3.5 mm/v kasvupaikasta riippuen. Harmaaporonjakalan kasvu oli nopeinta nuorehkossa (60 v) tiheassa metsassa, hitainta paljaaksihakkuulla ja vanhassa (180 v), jo harventuneessa metsassa. Mietoporonjakala kasvoi nopeimmin 90 cm:n taimikossa ja hitaimmin varjoisimmalla kasvupaikalla. Tulosten perusteella on vaikea yhtya kasitykseen, etta paljaaksihakkuu sinansa vahentaa poronjakalien kasvunopeutta. Myos poronhoidon kannalta on kuitenkin tarkeaa, etta uusi metsa saadaan aikaan mahdollisimman nopeasti, silla molemmat lajit kasvavat nopeimmin eri-ikaisissa nuorissa metsissa.</p>