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Mohammadi M, Razmara J, Hadizadeh M, Parvizpour S, Shahir Shamsir M. Peptide vaccine design against glioblastoma by applying immunoinformatics approach. Int Immunopharmacol 2024;142:113219. [PMID: 39340993 DOI: 10.1016/j.intimp.2024.113219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Revised: 09/15/2024] [Accepted: 09/18/2024] [Indexed: 09/30/2024]
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Parvizpour S, Beyrampour-Basmenj H, Razmara J, Farhadi F, Shamsir MS. Cancer treatment comes to age: from one-size-fits-all to next-generation sequencing (NGS) technologies. BIOIMPACTS : BI 2023;14:29957. [PMID: 39104623 PMCID: PMC11298019 DOI: 10.34172/bi.2023.29957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 11/08/2023] [Accepted: 11/14/2023] [Indexed: 08/07/2024]
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Khatir RA, Izadkhah H, Razmara J. Designing a Novel Approach Using a Greedy and Information-Theoretic Clustering-Based Algorithm for Anonymizing Microdata Sets. ENTROPY (BASEL, SWITZERLAND) 2023;25:1613. [PMID: 38136493 PMCID: PMC10742671 DOI: 10.3390/e25121613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 11/16/2023] [Accepted: 11/22/2023] [Indexed: 12/24/2023]
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Amiri R, Razmara J, Parvizpour S, Izadkhah H. A novel efficient drug repurposing framework through drug-disease association data integration using convolutional neural networks. BMC Bioinformatics 2023;24:442. [PMID: 37993777 PMCID: PMC10664633 DOI: 10.1186/s12859-023-05572-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 11/17/2023] [Indexed: 11/24/2023]  Open
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Parvizpour S, Elengoe A, Alizadeh E, Razmara J, Shamsir MS. In silico targeting breast cancer biomarkers by applying rambutan (Nephelium lappaceum) phytocompounds. J Biomol Struct Dyn 2023;41:10037-10050. [PMID: 36451602 DOI: 10.1080/07391102.2022.2152868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 11/23/2022] [Indexed: 12/03/2022]
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Omidian H, Razmara J, Parvizpour S, Tabrizchi H, Masoudi-Sobhanzadeh Y, Omidi Y. Tracing drugs from discovery to disposal. Drug Discov Today 2023;28:103538. [PMID: 36828192 DOI: 10.1016/j.drudis.2023.103538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 02/08/2023] [Accepted: 02/14/2023] [Indexed: 02/24/2023]
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Parvizpour S, Masoudi-Sobhanzadeh Y, Pourseif MM, Barzegari A, Razmara J, Omidi Y. Pharmacoinformatics-based phytochemical screening for anticancer impacts of yellow sweet clover, Melilotus officinalis (Linn.) Pall. Comput Biol Med 2021;138:104921. [PMID: 34656871 DOI: 10.1016/j.compbiomed.2021.104921] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Revised: 10/03/2021] [Accepted: 10/05/2021] [Indexed: 11/24/2022]
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Mirzaei S, Razmara J, Lotfi S. GADP-align: A genetic algorithm and dynamic programming-based method for structural alignment of proteins. BIOIMPACTS 2020;11:271-279. [PMID: 34631489 PMCID: PMC8494253 DOI: 10.34172/bi.2021.37] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 06/10/2020] [Accepted: 06/16/2020] [Indexed: 11/16/2022]
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Parvizpour S, Pourseif MM, Razmara J, Rafi MA, Omidi Y. Epitope-based vaccine design: a comprehensive overview of bioinformatics approaches. Drug Discov Today 2020;25:1034-1042. [DOI: 10.1016/j.drudis.2020.03.006] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2019] [Revised: 01/12/2020] [Accepted: 03/06/2020] [Indexed: 12/26/2022]
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Parvizpour S, Jomah AF, Razmara J. Structural and Functional Analysis of Mutated Human Pyrin B30.2 Domain. CURR PROTEOMICS 2020. [DOI: 10.2174/1570164616666190628165835] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
11
Parvizpour S, Razmara J, Shamsir MS. Temperature adaptation analysis of a psychrophilic mannanase through structural, functional and molecular dynamics simulation. MOLECULAR SIMULATION 2018. [DOI: 10.1080/08927022.2018.1492721] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Parvizpour S, Razmara J, Pourseif MM, Omidi Y. In silico design of a triple-negative breast cancer vaccine by targeting cancer testis antigens. ACTA ACUST UNITED AC 2018;9:45-56. [PMID: 30788259 PMCID: PMC6378095 DOI: 10.15171/bi.2019.06] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Revised: 04/10/2018] [Accepted: 04/14/2018] [Indexed: 12/14/2022]
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Parvizpour S, Razmara J, Omidi Y. Breast cancer vaccination comes to age: impacts of bioinformatics. ACTA ACUST UNITED AC 2018;8:223-235. [PMID: 30211082 PMCID: PMC6128970 DOI: 10.15171/bi.2018.25] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2018] [Revised: 04/02/2018] [Accepted: 04/03/2018] [Indexed: 01/01/2023]
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Morshedian A, Razmara J, Lotfi S. A novel approach for protein structure prediction based on an estimation of distribution algorithm. Soft comput 2018. [DOI: 10.1007/s00500-018-3130-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
15
Sadat Mohajer F, Parvizpour S, Razmara J, Shahir Shamsir M. The two mutations of actin-myosin interface and their effect on the dynamics, structures, and functions of skeletal muscle actin. J Biomol Struct Dyn 2018;37:372-382. [PMID: 29338614 DOI: 10.1080/07391102.2018.1427630] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
16
Razmara J, Zaboli MH, Hassankhani H. Elderly fall risk prediction based on a physiological profile approach using artificial neural networks. Health Informatics J 2016;24:410-418. [PMID: 28050920 DOI: 10.1177/1460458216677841] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
17
Parvizpour S, Razmara J, Shamsir MS, Illias RM, Abdul Murad AM. The role of alternative salt bridges in cold adaptation of a novel psychrophilic laminarinase. J Biomol Struct Dyn 2016;35:1685-1692. [PMID: 27206405 DOI: 10.1080/07391102.2016.1191043] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
18
Mohajer FS, Parvizpour S, Razmara J, Khoshkhooy Yazdi M, Shamsir MS. Structural, functional and molecular dynamics analysis of the native and mutated actin to study its effect on congenital myopathy. J Biomol Struct Dyn 2016;35:1608-1614. [PMID: 27448459 DOI: 10.1080/07391102.2016.1190299] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Razmara J, Deris SB, Parvizpour S. A context evaluation approach for structural comparison of proteins using cross entropy over n-gram modelling. Comput Biol Med 2013;43:1614-21. [DOI: 10.1016/j.compbiomed.2013.07.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2012] [Revised: 07/16/2013] [Accepted: 07/18/2013] [Indexed: 11/25/2022]
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Razmara J, Deris SB, Illias RBM, Parvizpour S. Artificial signal peptide prediction by a hidden markov model to improve protein secretion via Lactococcus lactis bacteria. Bioinformation 2013;9:345-8. [PMID: 23750078 PMCID: PMC3669786 DOI: 10.6026/97320630009345] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2013] [Accepted: 04/05/2013] [Indexed: 11/23/2022]  Open
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Razmara J, Deris S, Parvizpour S. TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison. Algorithms Mol Biol 2012;7:4. [PMID: 22336468 PMCID: PMC3298807 DOI: 10.1186/1748-7188-7-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2011] [Accepted: 02/15/2012] [Indexed: 02/02/2023]  Open
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Razmara J, Deris S, Parvizpour S. A rapid protein structure alignment algorithm based on a text modeling technique. Bioinformation 2011;6:344-7. [PMID: 21814392 PMCID: PMC3143397 DOI: 10.6026/97320630006344] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2011] [Accepted: 05/09/2011] [Indexed: 11/23/2022]  Open
23
Hauser H, Roob JM, El Shabrawy A, Hohl MA, Razmara J, Holzer H, Mischinger HJ. Continuous Ambulatory Peritoneal Dialysis – Surgical Technique, Early and Late Complications. Eur Surg 2003. [DOI: 10.1007/s10353-003-0035-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Hauser H, Mischinger HJ, Beham A, Berger A, Cerwenka H, Razmara J, Fruhwirth H, Werkgartner G. Cystic retroperitoneal lymphangiomas in adults. EUROPEAN JOURNAL OF SURGICAL ONCOLOGY 1997;23:322-6. [PMID: 9315061 DOI: 10.1016/s0748-7983(97)90777-0] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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