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McConn BR, Kraft AL, Durso LM, Ibekwe AM, Frye JG, Wells JE, Tobey EM, Ritchie S, Williams CF, Cook KL, Sharma M. An analysis of culture-based methods used for the detection and isolation of Salmonella spp., Escherichia coli, and Enterococcus spp. from surface water: A systematic review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;927:172190. [PMID: 38575025 DOI: 10.1016/j.scitotenv.2024.172190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Revised: 03/14/2024] [Accepted: 04/01/2024] [Indexed: 04/06/2024]
2
Harlow K, Summers KL, Oliver WT, Wells JE, Crouse M, Neville BW, Rempel LA, Rivera I, Ramsay TG, Davies CP. Weaning transition, but not the administration of probiotic candidate Kazachstania slooffiae, shaped the gastrointestinal bacterial and fungal communities in nursery piglets. Front Vet Sci 2024;10:1303984. [PMID: 38274656 PMCID: PMC10808496 DOI: 10.3389/fvets.2023.1303984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 12/20/2023] [Indexed: 01/27/2024]  Open
3
Dornbach CW, Hales KE, Gubbels ER, Wells JE, Hoffman AA, Hanratty AN, Line DJ, Smock TM, Manahan JL, McDaniel ZS, Kohl KB, Burdick Sanchez NC, Carroll JA, Rusche WC, Smith ZK, Broadway PR. Longitudinal Assessment of Prevalence and Incidence of Salmonella and Escherichia coli O157 Resistance to Antimicrobials in Feedlot Cattle Sourced and Finished in Two Different Regions of the United States. Foodborne Pathog Dis 2023;20:334-342. [PMID: 37405734 DOI: 10.1089/fpd.2023.0009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/06/2023]  Open
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Long NS, Hales KE, Berry ED, Legako JF, Woerner DR, Broadway PR, Carroll JA, Burdick Sanchez NC, Fernando SC, Wells JE. Antibimicrobial Susceptibility of Trimethoprim-Sulfamethoxazole and 3rd-Generation Cephalosporin-Resistant Escherichia coli Isolates Enumerated Longitudinally from Feedlot Arrival to Harvest in High-Risk Beef Cattle Administered Common Metaphylactic Antimicrobials. Foodborne Pathog Dis 2023;20:252-260. [PMID: 37384919 DOI: 10.1089/fpd.2023.0001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/01/2023]  Open
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Coppin CM, Smock TM, Helmuth CL, Manahan JL, Long NS, Hoffman AA, Carroll JA, Broadway PR, Burdick Sanchez NC, Wells JE, Fernando SC, Hales KE. The effects of administering different metaphylactic antimicrobials on growth performance and health outcomes of high-risk, newly received feedlot steers. Transl Anim Sci 2022;6:txac140. [PMID: 36415567 PMCID: PMC9673257 DOI: 10.1093/tas/txac140] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 10/13/2022] [Indexed: 12/26/2024]  Open
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Long NS, Wells JE, Berry ED, Legako JF, Woerner DR, Loneragan GH, Broadway PR, Carroll JA, Sanchez NCB, Fernando SC, Bacon CM, Helmuth CL, Smock TM, Manahan JL, Hoffman AA, Hales KE. Metaphylactic antimicrobial effects on occurrences of antimicrobial resistance in Salmonella enterica, Escherichia coli and Enterococcus spp. measured longitudinally from feedlot arrival to harvest in high-risk beef cattle. J Appl Microbiol 2022;133:1940-1955. [PMID: 35766106 PMCID: PMC9546201 DOI: 10.1111/jam.15691] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 06/08/2022] [Accepted: 06/23/2022] [Indexed: 11/28/2022]
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Rubeck LM, Wells JE, Hanford KJ, Durso LM, Schacht WH, Berry ED. Management-intensive grazing impacts on total Escherichia coli, E. coli O157:H7, and antibiotic resistance genes in a riparian stream. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;817:152611. [PMID: 34995584 DOI: 10.1016/j.scitotenv.2021.152611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 12/17/2021] [Accepted: 12/18/2021] [Indexed: 06/14/2023]
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See AE, Tom WA, Hales KE, Wells JE, Fernando SC. PSVII-13 Amplicon-Based Sequencing of Antimicrobial Resistance Gene Variants in Beef Cattle. J Anim Sci 2022. [DOI: 10.1093/jas/skac064.322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
9
Weinroth MD, Clawson ML, Arthur TM, Wells JE, Brichta-Harhay DM, Strachan N, Bono JL. Rates of evolutionary change of resident Escherichia coli O157:H7 differ within the same ecological niche. BMC Genomics 2022;23:275. [PMID: 35392797 PMCID: PMC8991562 DOI: 10.1186/s12864-022-08497-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 03/23/2022] [Indexed: 11/25/2022]  Open
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Rempel LA, Keel BN, Oliver WT, Wells JE, Lents CA, Nonneman DJ, Rohrer GA. Dam parity structure and body condition during lactation influence piglet growth and gilt sexual maturation through pre-finishing. J Anim Sci 2022;100:6562283. [PMID: 35363309 PMCID: PMC9030212 DOI: 10.1093/jas/skac031] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 02/02/2022] [Indexed: 12/31/2022]  Open
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Weinroth MD, Belk AD, Dean C, Noyes N, Dittoe DK, Rothrock MJ, Ricke SC, Myer PR, Henniger MT, Ramírez GA, Oakley BB, Summers KL, Miles AM, Ault-Seay TB, Yu Z, Metcalf JL, Wells JE. Considerations and best practices in animal science 16S ribosomal RNA gene sequencing microbiome studies. J Anim Sci 2022;100:skab346. [PMID: 35106579 PMCID: PMC8807179 DOI: 10.1093/jas/skab346] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 11/19/2021] [Indexed: 12/13/2022]  Open
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Lindholm-Perry AK, Kuehn LA, Wells JE, Rempel LA, Chitko-McKown CG, Keel BN, Oliver WT. Hematology parameters as potential indicators of feed efficiency in pigs. Transl Anim Sci 2021;5:txab219. [PMID: 34909604 DOI: 10.1093/tas/txab219] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 11/17/2021] [Indexed: 12/20/2022]  Open
13
Keel BN, Lindholm-Perry AK, Oliver WT, Wells JE, Jones SA, Rempel LA. Characterization and comparative analysis of transcriptional profiles of porcine colostrum and mature milk at different parities. BMC Genom Data 2021;22:25. [PMID: 34376140 PMCID: PMC8353812 DOI: 10.1186/s12863-021-00980-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 07/29/2021] [Indexed: 12/26/2022]  Open
14
Abbas W, Keel BN, Kachman SD, Fernando SC, Wells JE, Hales KE, Lindholm-Perry AK. Rumen epithelial transcriptome and microbiome profiles of rumen epithelium and contents of beef cattle with and without liver abscesses. J Anim Sci 2021;98:5973699. [PMID: 33170221 DOI: 10.1093/jas/skaa359] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 11/03/2020] [Indexed: 01/04/2023]  Open
15
Abbas W, Lindholm-Perry AK, Keel BN, Wells JE, Hales K, Knoell A, Paz HA, Fernando S. 224 Epimural microbiota and rumen epithelial gene expression in healthy and liver-abscessed animals. J Anim Sci 2020. [DOI: 10.1093/jas/skaa054.234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Clemmons BA, Schneider LG, Melchior EA, Lindholm-Perry AK, Hales KE, Wells JE, Freetly HC, Hansen SL, Drewnoski ME, Hartman SJ, Myer PR. The effects of feeding ferric citrate on ruminal bacteria, methanogenic archaea and methane production in growing beef steers. Access Microbiol 2020;3:acmi000180. [PMID: 33997611 PMCID: PMC8115977 DOI: 10.1099/acmi.0.000180] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 10/30/2020] [Indexed: 11/18/2022]  Open
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Freetly HC, Dickey A, Lindholm-Perry AK, Thallman RM, Keele JW, Foote AP, Wells JE. Digestive tract microbiota of beef cattle that differed in feed efficiency. J Anim Sci 2020;98:5701150. [PMID: 31930312 DOI: 10.1093/jas/skaa008] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 01/10/2020] [Indexed: 12/13/2022]  Open
18
Wells JE, Berry ED, Kim M, Bono JL, Oliver WT, Kalchayanand N, Wang R, Freetly HC, Means WJ. Determination of gastrointestinal tract colonization sites from feedlot cattle transiently shedding or super-shedding Escherichia coli O157:H7 at harvest. J Appl Microbiol 2020;129:1419-1426. [PMID: 32350973 DOI: 10.1111/jam.14684] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 03/24/2020] [Accepted: 04/26/2020] [Indexed: 11/28/2022]
19
Berry ED, Wells JE, Durso LM, Friesen KM, Bono JL, Suslow TV. Occurrence of Escherichia coli O157:H7 in Pest Flies Captured in Leafy Greens Plots Grown Near a Beef Cattle Feedlot. J Food Prot 2019;82:1300-1307. [PMID: 31310171 DOI: 10.4315/0362-028x.jfp-18-601] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
20
Wells JE, Berry E, Oliver WT. 113 Pathogen shedding in feces of nursery swine. J Anim Sci 2019. [DOI: 10.1093/jas/skz122.118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
21
Cervantes MA, Garcia MR, Keel BN, Oliver WT, Wells JE, Rempel LA. PSI-16 Sow parity structure and body condition measurements throughout lactation and relationship to piglet growth. J Anim Sci 2019. [DOI: 10.1093/jas/skz122.441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Abbas W, Howard JT, Paz HA, Hales KE, Wells JE, Kuehn LA, Spangler ML, Erickson GE, Fernando SC. 93 Host genetics help shape the rumen microbiome in beef cattle. J Anim Sci 2019. [DOI: 10.1093/jas/skz122.093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
23
Hampton SN, Nakonezny PA, Richard HM, Wells JE. Pain catastrophizing, anxiety, and depression in hip pathology. Bone Joint J 2019;101-B:800-807. [PMID: 31256659 DOI: 10.1302/0301-620x.101b7.bjj-2018-1309.r1] [Citation(s) in RCA: 76] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Paz HA, Hales KE, Wells JE, Kuehn LA, Freetly HC, Berry ED, Flythe MD, Spangler ML, Fernando SC. Rumen bacterial community structure impacts feed efficiency in beef cattle. J Anim Sci 2018;96:1045-1058. [PMID: 29617864 PMCID: PMC6093515 DOI: 10.1093/jas/skx081] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Accepted: 03/09/2018] [Indexed: 12/20/2022]  Open
25
Smith KE, Garza AL, Butterfield KM, Dickey AM, Lindholm-Perry AK, Wells JE, Freetly HC, Lodge-Ivey SL. Succession of ruminal bacterial species and fermentation characteristics in preweaned Brangus calves. Transl Anim Sci 2018;2:S48-S52. [PMID: 32704735 PMCID: PMC7200861 DOI: 10.1093/tas/txy043] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Accepted: 04/14/2018] [Indexed: 12/20/2022]  Open
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