1
|
Ali E, Diop A, Dupuy JF. A constrained marginal zero-inflated binomial regression model. COMMUN STAT-THEOR M 2022. [DOI: 10.1080/03610926.2020.1861296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Essoham Ali
- LERSTAD, University Gaston Berger, Saint-Louis, Senegal
| | - Aliou Diop
- LERSTAD, University Gaston Berger, Saint-Louis, Senegal
| | | |
Collapse
|
2
|
Lequy E, Zare Sakhvidi MJ, Vienneau D, de Hoogh K, Chen J, Dupuy JF, Garès V, Burte E, Bouaziz O, Le Tertre A, Wagner V, Hertel O, Christensen JH, Zhivin S, Siemiatycki J, Goldberg M, Zins M, Jacquemin B. Influence of exposure assessment methods on associations between long-term exposure to outdoor fine particulate matter and risk of cancer in the French cohort Gazel. Sci Total Environ 2022; 820:153098. [PMID: 35041955 DOI: 10.1016/j.scitotenv.2022.153098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 12/23/2021] [Accepted: 01/09/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Many studies investigated the relationship between outdoor fine particulate matter (PM2.5) and cancer. While they generally indicated positive associations, results have not been fully consistent, possibly because of the diversity of methods used to assess exposure. OBJECTIVES To investigate how using different PM2.5 exposure assessment methods influences risk estimates in the large French general population-based Gazel cohort (20,625 participants at enrollment) with a 26-year follow-up with complete residential histories. METHODS We focused on two cancer incidence outcomes: all-sites combined and lung. We used two distinct exposure assessment methods: a western European land use regression (LUR), and a chemistry-dispersion model (Gazel-Air) for France, each with a time series ≥20-years annual concentrations. Spearman correlation coefficient between the two estimates of PM2.5 was 0.71 across all person-years; the LUR tended to provide higher exposures. We used extended Cox models with attained age as time-scale and time-dependent cumulative exposures, adjusting for a set of confounders including sex and smoking, to derive hazard ratios (HRs) and their 95% confidence interval, implementing a 10-year lag between exposure and incidence/censoring. RESULTS We obtained similar two-piece linear associations for all-sites cancer (3711 cases), with a first slope of HRs of 1.53 (1.24-1.88) and 1.43 (1.19-1.73) for one IQR increase of cumulative PM2.5 exposure for the LUR and the Gazel-Air models respectively, followed by a plateau at around 1.5 for both exposure assessments. For lung cancer (349 cases), the HRs from the two exposure models were less similar, with largely overlapping confidence limits. CONCLUSION Our findings using long-term exposure estimates from two distinct exposure assessment methods corroborate the association between air pollution and cancer risk.
Collapse
Affiliation(s)
- Emeline Lequy
- Unité "Cohortes en Population" UMS 011 Inserm/Université de Paris/Université Paris Saclay/UVSQ, Villejuif, France; Centre de recherche du centre hospitalier de l'université de Montréal, Québec, Canada.
| | - Mohammad Javad Zare Sakhvidi
- Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S 1085, F-35000 Rennes, France
| | - Danielle Vienneau
- Swiss Tropical and Public Health Institute, Basel, Switzerland; University of Basel, Basel, Switzerland
| | - Kees de Hoogh
- Swiss Tropical and Public Health Institute, Basel, Switzerland; University of Basel, Basel, Switzerland
| | - Jie Chen
- Utrecht University, Utrecht, the Netherlands
| | | | - Valérie Garès
- Univ Rennes, INSA, CNRS, IRMAR - UMR 6625, F-35000 Rennes, France
| | - Emilie Burte
- Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S 1085, F-35000 Rennes, France
| | | | | | | | - Ole Hertel
- Dep. Env. Science, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark
| | | | - Sergey Zhivin
- Unité "Cohortes en Population" UMS 011 Inserm/Université de Paris/Université Paris Saclay/UVSQ, Villejuif, France
| | - Jack Siemiatycki
- Centre de recherche du centre hospitalier de l'université de Montréal, Québec, Canada
| | - Marcel Goldberg
- Unité "Cohortes en Population" UMS 011 Inserm/Université de Paris/Université Paris Saclay/UVSQ, Villejuif, France
| | - Marie Zins
- Unité "Cohortes en Population" UMS 011 Inserm/Université de Paris/Université Paris Saclay/UVSQ, Villejuif, France
| | - Bénédicte Jacquemin
- Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S 1085, F-35000 Rennes, France
| |
Collapse
|
3
|
Diop A, Diop A, Dupuy JF. Simultaneous confidence bands in a zero-inflated regression model for binary data. Random Operators and Stochastic Equations 2022. [DOI: 10.1515/rose-2022-2073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The logistic regression model has become a standard tool to investigate the relationship between a binary outcome and a set of potential predictors. When analyzing binary data, it often arises, however, that the observed proportion of zeros is greater than expected under the postulated logistic model. Zero-inflated binomial (ZIB) models have been developed to fit binary data that contain too many zeros. Maximum likelihood estimators in these models have been proposed, and their asymptotic properties were recently established. In this paper, we use these asymptotic properties to construct simultaneous confidence bands for the probability of a positive outcome in a ZIB regression model. Simultaneous confidence bands are especially attractive since they allow inference to be made over the whole regressor space. We construct two types of confidence bands, based on: (i) the Scheffé method for the linear regression model;
(ii) Monte Carlo simulations to approximate the distribution of the supremum of a Gaussian field indexed by the regressor. The finite-samples properties of these two types of bands are investigated and compared in a simulation study.
Collapse
Affiliation(s)
- Aba Diop
- Département de Mathématiques , Université Alioune Diop de Bambey , B.P 30 , Bambey , Senegal
| | - Aliou Diop
- Département de Mathématiques , Université Gaston Berger de Saint-Louis , B.P 234 , Saint-Louis , Senegal
| | - Jean-François Dupuy
- Département de Mathématiques, IRMAR , INSA de Rennes , 35708 cedex 7 , Rennes , France
| |
Collapse
|
4
|
Dupuy JF. Censored Gamma Regression with Uncertain Censoring Status. Math Meth Stat 2022. [DOI: 10.3103/s106653072004002x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
5
|
Lequy E, Siemiatycki J, de Hoogh K, Vienneau D, Dupuy JF, Garès V, Hertel O, Christensen JH, Zhivin S, Goldberg M, Zins M, Jacquemin B. Contribution of Long-Term Exposure to Outdoor Black Carbon to the Carcinogenicity of Air Pollution: Evidence regarding Risk of Cancer in the Gazel Cohort. Environ Health Perspect 2021; 129:37005. [PMID: 33759553 PMCID: PMC7989243 DOI: 10.1289/ehp8719] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 02/19/2021] [Accepted: 02/22/2021] [Indexed: 05/31/2023]
Abstract
BACKGROUND Black carbon (BC), a component of fine particulate matter [particles with an aerodynamic diameter ≤2.5 μm (PM2.5)], may contribute to carcinogenic effects of air pollution. Until recently however, there has been little evidence to evaluate this hypothesis. OBJECTIVE This study aimed to estimate the associations between long-term exposure to BC and risk of cancer. This study was conducted within the French Gazel cohort of 20,625 subjects. METHODS We assessed exposure to BC by linking subjects' histories of residential addresses to a map of European black carbon levels in 2010 with back- and forward-extrapolation between 1989 and 2015. We used extended Cox models, with attained age as time-scale and time-varying cumulative exposure to BC, adjusted for relevant sociodemographic and lifestyle variables. To consider latency between exposure and cancer diagnosis, we implemented a 10-y lag, and as a sensitivity analysis, a lag of 2 y. To isolate the effect of BC from that of total PM2.5, we regressed BC on PM2.5 and used the residuals as the exposure variable. RESULTS During the 26-y follow-up period, there were 3,711 incident cancer cases (all sites combined) and 349 incident lung cancers. Median baseline exposure in 1989 was 2.65 10-5/m [interquartile range (IQR): 2.23-3.33], which generally slightly decreased over time. Using 10 y as a lag-time in our models, the adjusted hazard ratio per each IQR increase of the natural log-transformed cumulative BC was 1.17 (95% confidence interval: 1.06, 1.29) for all-sites cancer combined and 1.31 (0.93, 1.83) for lung cancer. Associations with BC residuals were also positive for both outcomes. Using 2 y as a lag-time, the results were similar. DISCUSSION Our findings for a cohort of French adults suggest that BC may partly explain the association between PM2.5 and lung cancer. Additional studies are needed to confirm our results and further disentangle the effects of BC, total PM2.5, and other constituents. https://doi.org/10.1289/EHP8719.
Collapse
Affiliation(s)
- Emeline Lequy
- UMS 011, Institut national de la santé et de la recherché médicale (Inserm), Villejuif, France
- Centre de recherche du centre hospitalier de l’université de Montréal, Université de Montréal, Québec, Canada
| | - Jack Siemiatycki
- Centre de recherche du centre hospitalier de l’université de Montréal, Université de Montréal, Québec, Canada
| | - Kees de Hoogh
- Swiss Tropical and Public Health Institute, Basel, Switzerland
- University of Basel, Basel, Switzerland
| | - Danielle Vienneau
- Swiss Tropical and Public Health Institute, Basel, Switzerland
- University of Basel, Basel, Switzerland
| | | | - Valérie Garès
- UMR 6625 IRMAR, INSA, CNRS, Université de Rennes, Rennes, France
| | - Ole Hertel
- Department of Environmental Science, Aarhus University, Roskilde, Denmark
| | | | - Sergey Zhivin
- UMS 011, Institut national de la santé et de la recherché médicale (Inserm), Villejuif, France
| | - Marcel Goldberg
- UMS 011, Institut national de la santé et de la recherché médicale (Inserm), Villejuif, France
| | - Marie Zins
- UMS 011, Institut national de la santé et de la recherché médicale (Inserm), Villejuif, France
| | - Bénédicte Jacquemin
- Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) – UMR_S 1085, Rennes, France
| |
Collapse
|
6
|
Affiliation(s)
- Bilel Bousselmi
- Univ Rennes, INSA Rennes, CNRS, IRMAR – UMR 6625, F-35000 Rennes, France
| | | | - Abderrazek Karoui
- University of Carthage, Department of Mathematics, Faculty of Sciences of Bizerte, Tunisia
| |
Collapse
|
7
|
Affiliation(s)
- Van Trinh Nguyen
- Univ Rennes, INSA Rennes, CNRS, IRMAR - UMR 6625, Rennes, France
| | | |
Collapse
|
8
|
Affiliation(s)
- Alpha Oumar Diallo
- LERSTAD, CEA-MITIC, Gaston Berger University, Saint Louis, Senegal
- Univ Rennes, INSA Rennes, CNRS, IRMAR - UMR 6625, F-35000 Rennes, France
| | - Aliou Diop
- LERSTAD, CEA-MITIC, Gaston Berger University, Saint Louis, Senegal
| | | |
Collapse
|
9
|
Diallo AO, Diop A, Dupuy JF. Analysis of multinomial counts with joint zero-inflation, with an application to health economics. J Stat Plan Inference 2018. [DOI: 10.1016/j.jspi.2017.09.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
10
|
|
11
|
Garès V, Andrieu S, Dupuy JF, Savy N. On the Fleming–Harrington test for late effects in prevention randomized controlled trials. Journal of Statistical Theory and Practice 2017. [DOI: 10.1080/15598608.2017.1295889] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Valérie Garès
- UMR 1027, Inserm, Paul Sabatier University, Toulouse, France
| | - Sandrine Andrieu
- UMR 1027, Inserm, Paul Sabatier University, Toulouse, France
- Department of Public Health, CHU of Toulouse, Toulouse, France
| | | | - Nicolas Savy
- Institute of Mathematics of Toulouse, Paul Sabatier University, Toulouse, France
| |
Collapse
|
12
|
Ameraoui A, Boukhetala K, Dupuy JF. Bayesian estimation of the tail index of a heavy tailed distribution under random censoring. Comput Stat Data Anal 2016. [DOI: 10.1016/j.csda.2016.06.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
13
|
Affiliation(s)
- Alpha Oumar Diallo
- LERSTAD, CEA-MITIC, Gaston Berger University, Saint Louis, Senegal
- Department of Mathematics, IRMAR-INSA, Rennes, France
| | - Aliou Diop
- LERSTAD, CEA-MITIC, Gaston Berger University, Saint Louis, Senegal
| | | |
Collapse
|
14
|
|
15
|
Garès V, Andrieu S, Dupuy JF, Savy N. An omnibus test for several hazard alternatives in prevention randomized controlled clinical trials. Stat Med 2014; 34:541-57. [DOI: 10.1002/sim.6366] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2013] [Revised: 10/15/2014] [Accepted: 10/26/2014] [Indexed: 11/11/2022]
Affiliation(s)
- Valérie Garès
- University of Toulouse III; Toulouse F-31073 France
- Toulouse Institute of Mathematics; UMR C5583 Toulouse F-31062 France
- INSERM, U1027; Toulouse F-31073 France
| | - Sandrine Andrieu
- University of Toulouse III; Toulouse F-31073 France
- INSERM, U1027; Toulouse F-31073 France
| | | | - Nicolas Savy
- University of Toulouse III; Toulouse F-31073 France
- Toulouse Institute of Mathematics; UMR C5583 Toulouse F-31062 France
| |
Collapse
|
16
|
Garès V, Andrieu S, Dupuy JF, Savy N. A comparison of the constant piecewise weighted logrank and Fleming-Harrington tests. Electron J Stat 2014. [DOI: 10.1214/14-ejs911] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
17
|
López MF, Dupuy JF, Gonzalez CV. Effectiveness of adaptive designs for phase II cancer trials. Contemp Clin Trials 2011; 33:223-7. [PMID: 22001360 DOI: 10.1016/j.cct.2011.09.017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2011] [Revised: 09/27/2011] [Accepted: 09/30/2011] [Indexed: 11/27/2022]
Abstract
BACKGROUND Evaluation of new therapies for cancer has suffered a paradigm shift in the last years. The use of innovative and more efficient designs is a priority for the scientific community; nevertheless, the use of this kind of design is not yet wide spread. PURPOSE In this paper will examine the effectiveness of adaptive designs compared with traditional designs in phase II clinical trials. METHODS We reviewed a group of abstracts records between 1980 and 2008 and extracted data regarding statistical design, year of publication, kind of evaluated product, localization, sample size and results of the trials. RESULTS Nine hundred and eighty-nine clinical trials were identified and from them 333 traditional designs and 19 adaptive designs were included in the review. Two hundred statistical papers were located and 16 were included in the review. The most frequent designs were Standard up and down designs, continual reassessment methods and its variation and designs with Bayesian approaches. More than 80% of the studies evaluated different schemes of chemotherapy. Adaptive designs evaluated only drugs and not any kind of treatment combination and the most often localizations evaluated in both designs were lung, haematology malignancies, and colon cancers. CONCLUSIONS Adaptive designs are more efficient from the statistical point of view but they are not yet widely used because of complex and computationally intensive methods needed, substantial effort for planning the trials and lack of regulatory guidance.
Collapse
|
18
|
|
19
|
|
20
|
|
21
|
Dupuy JF, Leconte E. A study of regression calibration in a partially observed stratified Cox model. J Stat Plan Inference 2009. [DOI: 10.1016/j.jspi.2008.04.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
22
|
Dupuy JF. Stratified Logrank Test of No Randomized Treatment Effect with Missing Stratum Information. COMMUN STAT-THEOR M 2008. [DOI: 10.1080/03610920801983201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
23
|
|
24
|
|
25
|
|
26
|
Abstract
Survival studies usually collect on each participant, both duration until some terminal event and repeated measures of a time-dependent covariate. Such a covariate is referred to as an internal time-dependent covariate. Usually, some subjects drop out of the study before occurrence of the terminal event of interest. One may then wish to evaluate the relationship between time to dropout and the internal covariate. The Cox model is a standard framework for that purpose. Here, we address this problem in situations where the value of the covariate at dropout is unobserved. We suggest a joint model which combines a first-order Markov model for the longitudinally measured covariate with a time-dependent Cox model for the dropout process. We consider maximum likelihood estimation in this model and show how estimation can be carried out via the EM-algorithm. We state that the suggested joint model may have applications in the context of longitudinal data with nonignorable dropout. Indeed, it can be viewed as generalizing Diggle and Kenward's model (1994) to situations where dropout may occur at any point in time and may be censored. Hence we apply both models and compare their results on a data set concerning longitudinal measurements among patients in a cancer clinical trial.
Collapse
Affiliation(s)
- Jean-François Dupuy
- Laboratoire de Statistiques Appliquées, l'Université de Bretagne-Sud (Sabres), 56000 Vannes, France.
| | | |
Collapse
|
27
|
Cessot F, Sautereau D, Devalois B, Dupuy JF, Le Sidaner A, Florence J, Catanzano G, Pillegand B. [Recto-colonic and hepatic involvement in graft-vs-host disease after bone marrow transplantation]. Ann Gastroenterol Hepatol (Paris) 1991; 27:21-5. [PMID: 2029181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
We report the case of a child suffering from a graft versus host disease after an allogenic bone marrow transplantation. He developed intestinal, hepatic and cutaneous symptoms. The outcome after treatment was favorable with a total normalization.
Collapse
Affiliation(s)
- F Cessot
- Service d'Hepato-Gastro-Entérologie, Centre Hospitalier, Universitaire, Limoges
| | | | | | | | | | | | | | | |
Collapse
|
28
|
Devalois B, Sautereau D, Desport JC, Dupuy JF, Sardin B, Claude R, Pillegand B. [Sedation in digestive endoscopy]. Gastroenterol Clin Biol 1989; 13:679-86. [PMID: 2572504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- B Devalois
- Service d'Anesthésie, CHU Dupuyfren, Limoges
| | | | | | | | | | | | | |
Collapse
|
29
|
Sava P, Ugazzi M, Franck B, Rigault M, Dupuy JF. [Volvulus of the sigmoid colon, complication disclosing ischemic colitis]. Gastroenterol Clin Biol 1989; 13:517-8. [PMID: 2753290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
|
30
|
Sautereau D, Sava P, Dupuy JF, Cessot F, Cubertafond P, Claude R, Pillegand B. [Cancer of the extrahepatic biliary tracts and abnormality of the biliopancreatic junction]. Gastroenterol Clin Biol 1989; 13:298-301. [PMID: 2731680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
This retrospective study was undertaken to evaluate the incidence of an abnormal pancreaticobiliary ductal union (long common duct) in biliary tract carcinoma. Of 86 patients presenting with such a cancer, 67 had a pre- or intra-operative radiologic examination. An abnormal pancreaticobiliary ductal union was found in only one 60 year old woman having stones associated with invasive gallbladder carcinoma. Operative cholangiogram revealed an early and marked Wirsung opacification with a 1.5 cm long common duct. This low incidence in our study contrasts deeply with Japanese data and raises several questions about the correct evaluation of pancreaticobiliary ductal union, the true consequences of such an anomaly and possible interracial variations in incidence.
Collapse
|
31
|
Laaban J, Dupuy JF. [Acute articular rheumatism in the adult]. Coeur Med Interne 1970; 9:201-7. [PMID: 5449655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
|